Pub Date : 2026-01-29DOI: 10.1186/s41232-026-00404-w
Koki Takahashi, Chris Kato, Koji Ueda, Shiho Nakamura, Fumiko Ozawa, Nobuko Moritoki, Shinsuke Shibata, Shinichi Takahashi, Satoru Morimoto, Hideyuki Okano
Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease characterized by progressive degeneration and loss of upper and lower motor neurons, with approximately 90% of cases being sporadic (sporadic ALS, SALS). A reliable diagnostic biomarker remains an unmet clinical need in SALS, with misdiagnosis and diagnostic delay hindering early management. The mislocalization of the RNA-binding protein TDP-43 (encoded by TARDBP), a pathological hallmark of SALS, could lead to aberrant splicing that produces transcripts with cryptic exons and, consequently, cryptic peptides. This study proposes cryptic peptides in serum extracellular vesicles as a novel candidate diagnostic biomarker of SALS. We included 10 healthy controls and 20 patients with SALS and quantified cryptic peptides predicted from cryptic exon sequences using mass spectrometry-based proteomics. Cryptic peptides from four proteins (RANBP1, IGLON5, ACTN1, ALPK2) were detected in participants, with the IGLON5 cryptic peptide detected significantly more frequently in SALS than in HC (adjusted P = 0.044). The number of detected cryptic peptides classified SALS and healthy controls with acceptable performance (area under the curve = 0.82). In conclusion, cryptic peptides could have diagnostic performance for SALS, warranting further validation.
{"title":"Diagnostic potential of cryptic exon-derived peptides in serum extracellular vesicles for sporadic amyotrophic lateral sclerosis.","authors":"Koki Takahashi, Chris Kato, Koji Ueda, Shiho Nakamura, Fumiko Ozawa, Nobuko Moritoki, Shinsuke Shibata, Shinichi Takahashi, Satoru Morimoto, Hideyuki Okano","doi":"10.1186/s41232-026-00404-w","DOIUrl":"https://doi.org/10.1186/s41232-026-00404-w","url":null,"abstract":"<p><p>Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease characterized by progressive degeneration and loss of upper and lower motor neurons, with approximately 90% of cases being sporadic (sporadic ALS, SALS). A reliable diagnostic biomarker remains an unmet clinical need in SALS, with misdiagnosis and diagnostic delay hindering early management. The mislocalization of the RNA-binding protein TDP-43 (encoded by TARDBP), a pathological hallmark of SALS, could lead to aberrant splicing that produces transcripts with cryptic exons and, consequently, cryptic peptides. This study proposes cryptic peptides in serum extracellular vesicles as a novel candidate diagnostic biomarker of SALS. We included 10 healthy controls and 20 patients with SALS and quantified cryptic peptides predicted from cryptic exon sequences using mass spectrometry-based proteomics. Cryptic peptides from four proteins (RANBP1, IGLON5, ACTN1, ALPK2) were detected in participants, with the IGLON5 cryptic peptide detected significantly more frequently in SALS than in HC (adjusted P = 0.044). The number of detected cryptic peptides classified SALS and healthy controls with acceptable performance (area under the curve = 0.82). In conclusion, cryptic peptides could have diagnostic performance for SALS, warranting further validation.</p>","PeriodicalId":94041,"journal":{"name":"Inflammation and regeneration","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2026-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146088566","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: In tooth development, the Wnt/β-catenin pathway has been shown to play a crucial role in tooth germ formation and tooth differentiation. Regeneration can be considered a replay of development. Understanding and reproducing the involvement of Wnt10a-which is reported to be the causative gene for congenital multiple tooth absence and participates in tooth development with spatiotemporal specificity-in pulp regeneration is essential for realizing dental regenerative medicine. Therefore, this study was initiated based on the concept that evaluating the dynamics of Wnt10a during angiogenesis, which is thought to occur early in dental pulp regeneration, could contribute to a more detailed elucidation of the dental pulp regeneration mechanism.
Methods: Deciduous dental pulp stem cells (SHED) were isolated from human deciduous teeth, and conditioned medium (CM) was collected. In addition, after the induction of vascular differentiation of SHED, the temporal gene expression of Wnt10a, VEGF-A, Tie-2, and β-catenin was analyzed by q-PCR and protein expression by Western blotting and ELISA from 0 to 48 h and 3, 7, 14, and 21 days after the induction.
Results: Canonical Wnt signaling was activated during angiogenesis in regenerated pulp-like tissue induced by ectopic root grafting, and Wnt10a had spatio-temporal specificity. Tie-2 activation occurred during the process of induction of vascular differentiation in SHED.
Conclusions: During angiogenesis in pulp regeneration, when SHED differentiate into blood vessels, Canonical Wnt signaling and VEGF-A are activated to form microvessels, and Tie-2 expression is enhanced to increase vessel circumference. Furthermore, Wnt10a was found to be activated in its early stages and decreased in its mature stages, with spatio-temporal specificity. Because its expression is very low, Wnt10a could be a biomarker to monitor the regenerative status of pulp regeneration.
{"title":"Wnt10a exhibit spatiotemporal singularity in the temporal changes of angiogenesis in regenerated pulp-like tissue.","authors":"Natsuki Iida, Yuki Hayashi, Taku Futenma, Shintaro Sakatoku, Yoshihiko Sugita, Keisuke Nakamura, Hiroyuki Nawa","doi":"10.1186/s41232-025-00397-y","DOIUrl":"10.1186/s41232-025-00397-y","url":null,"abstract":"<p><strong>Background: </strong>In tooth development, the Wnt/β-catenin pathway has been shown to play a crucial role in tooth germ formation and tooth differentiation. Regeneration can be considered a replay of development. Understanding and reproducing the involvement of Wnt10a-which is reported to be the causative gene for congenital multiple tooth absence and participates in tooth development with spatiotemporal specificity-in pulp regeneration is essential for realizing dental regenerative medicine. Therefore, this study was initiated based on the concept that evaluating the dynamics of Wnt10a during angiogenesis, which is thought to occur early in dental pulp regeneration, could contribute to a more detailed elucidation of the dental pulp regeneration mechanism.</p><p><strong>Methods: </strong>Deciduous dental pulp stem cells (SHED) were isolated from human deciduous teeth, and conditioned medium (CM) was collected. In addition, after the induction of vascular differentiation of SHED, the temporal gene expression of Wnt10a, VEGF-A, Tie-2, and β-catenin was analyzed by q-PCR and protein expression by Western blotting and ELISA from 0 to 48 h and 3, 7, 14, and 21 days after the induction.</p><p><strong>Results: </strong>Canonical Wnt signaling was activated during angiogenesis in regenerated pulp-like tissue induced by ectopic root grafting, and Wnt10a had spatio-temporal specificity. Tie-2 activation occurred during the process of induction of vascular differentiation in SHED.</p><p><strong>Conclusions: </strong>During angiogenesis in pulp regeneration, when SHED differentiate into blood vessels, Canonical Wnt signaling and VEGF-A are activated to form microvessels, and Tie-2 expression is enhanced to increase vessel circumference. Furthermore, Wnt10a was found to be activated in its early stages and decreased in its mature stages, with spatio-temporal specificity. Because its expression is very low, Wnt10a could be a biomarker to monitor the regenerative status of pulp regeneration.</p>","PeriodicalId":94041,"journal":{"name":"Inflammation and regeneration","volume":"46 1","pages":"6"},"PeriodicalIF":0.0,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12836903/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146055845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-20DOI: 10.1186/s41232-026-00408-6
Nayeon Shin, Sohyeon Park, Myung-Whan Suh, Sang Yeon Lee, Jun-Ho Lee, Moo Kyun Park
Background: Otitis media (OM) is an inflammatory disease of the middle ear characterized by mucosal remodeling, effusion, and conductive hearing loss. Although antibiotics and surgical procedures remain standard treatments, their efficacy is often limited by recurrence, antibiotic resistance, and chronic progression. Transcutaneous auricular vagus nerve stimulation (taVNS) is a non-invasive neuromodulatory technique that activates the cholinergic anti-inflammatory pathway through α7 nicotinic acetylcholine receptor (α7nAChR) signaling. This study aimed to evaluate the anti-inflammatory effects of taVNS in a lipopolysaccharide (LPS)-induced mouse model of acute otitis media (AOM) and to assess whether these effects may involve α7nAChR-dependent mechanisms.
Methods: AOM was induced by transtympanic injection of LPS in BALB/c mice, followed by taVNS applied to the auricular concha using biphasic square pulses (0.3 mA, 20 Hz, 200 μs). Methyllycaconitine, a selective α7nAChR antagonist, was administered to assess receptor involvement. Auditory function, tympanic membrane morphology, and mucosal changes were assessed through auditory brainstem response testing, otoscopic imaging, and histological analysis. Cytokine levels in middle ear effusion and serum were quantified by ELISA, while inflammatory gene and protein expression were analyzed using qPCR and Western blotting. Statistical analyses were performed using one-way ANOVA or Kruskal-Wallis tests with post hoc comparisons.
Results: taVNS significantly improved hearing thresholds and reduced mucosal thickening and goblet cell hyperplasia in AOM mice. It markedly decreased tumor necrosis factor-α, interleukin (IL)-1β, and IL-6 levels in middle ear effusion, and mechanistically, this anti-inflammatory effect was associated with suppression of NF-κB activation without altering TLR4 or MYD88 expression. These effects were abolished by methyllycaconitine pretreatment. taVNS also reduced spleen enlargement and systemic cytokine concentrations, indicating modulation of both local and systemic inflammation.
Conclusions: taVNS was associated with attenuation of LPS-induced acute otitis media and reduced NF-κB activation and downstream cytokine expression in a manner consistent with the involvement of α7nAChR-related signaling. By attenuating excessive inflammatory responses, taVNS was associated with improved auditory function and reduced middle ear injury, suggesting its potential as a non-invasive therapeutic strategy for LPS-induced acute otitis media.
{"title":"Transcutaneous auricular vagus nerve stimulation promotes recovery from otitis media by activating the α7nAChR-mediated anti-inflammatory pathway.","authors":"Nayeon Shin, Sohyeon Park, Myung-Whan Suh, Sang Yeon Lee, Jun-Ho Lee, Moo Kyun Park","doi":"10.1186/s41232-026-00408-6","DOIUrl":"10.1186/s41232-026-00408-6","url":null,"abstract":"<p><strong>Background: </strong>Otitis media (OM) is an inflammatory disease of the middle ear characterized by mucosal remodeling, effusion, and conductive hearing loss. Although antibiotics and surgical procedures remain standard treatments, their efficacy is often limited by recurrence, antibiotic resistance, and chronic progression. Transcutaneous auricular vagus nerve stimulation (taVNS) is a non-invasive neuromodulatory technique that activates the cholinergic anti-inflammatory pathway through α7 nicotinic acetylcholine receptor (α7nAChR) signaling. This study aimed to evaluate the anti-inflammatory effects of taVNS in a lipopolysaccharide (LPS)-induced mouse model of acute otitis media (AOM) and to assess whether these effects may involve α7nAChR-dependent mechanisms.</p><p><strong>Methods: </strong>AOM was induced by transtympanic injection of LPS in BALB/c mice, followed by taVNS applied to the auricular concha using biphasic square pulses (0.3 mA, 20 Hz, 200 μs). Methyllycaconitine, a selective α7nAChR antagonist, was administered to assess receptor involvement. Auditory function, tympanic membrane morphology, and mucosal changes were assessed through auditory brainstem response testing, otoscopic imaging, and histological analysis. Cytokine levels in middle ear effusion and serum were quantified by ELISA, while inflammatory gene and protein expression were analyzed using qPCR and Western blotting. Statistical analyses were performed using one-way ANOVA or Kruskal-Wallis tests with post hoc comparisons.</p><p><strong>Results: </strong>taVNS significantly improved hearing thresholds and reduced mucosal thickening and goblet cell hyperplasia in AOM mice. It markedly decreased tumor necrosis factor-α, interleukin (IL)-1β, and IL-6 levels in middle ear effusion, and mechanistically, this anti-inflammatory effect was associated with suppression of NF-κB activation without altering TLR4 or MYD88 expression. These effects were abolished by methyllycaconitine pretreatment. taVNS also reduced spleen enlargement and systemic cytokine concentrations, indicating modulation of both local and systemic inflammation.</p><p><strong>Conclusions: </strong>taVNS was associated with attenuation of LPS-induced acute otitis media and reduced NF-κB activation and downstream cytokine expression in a manner consistent with the involvement of α7nAChR-related signaling. By attenuating excessive inflammatory responses, taVNS was associated with improved auditory function and reduced middle ear injury, suggesting its potential as a non-invasive therapeutic strategy for LPS-induced acute otitis media.</p>","PeriodicalId":94041,"journal":{"name":"Inflammation and regeneration","volume":" ","pages":"7"},"PeriodicalIF":0.0,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12849157/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146014138","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Super-enhancers (SEs), characterized by dense clusters of enhancer elements enriched with transcriptional activator binding sites, are involved in cell differentiation. However, little is known about SE-mediated regulation of adipogenic genes. The aim of this study was to elucidate the functional role of the KLF6-proximal SE during the adipogenesis of human adipose-derived stem cells (hADSCs).
Methods: Adipogenic induction medium (AIM) was used for differentiation of hADSCs into adipocytes, which were evaluated for adipogenic gene expression and adipogenesis using quantitative PCR and Oil Red O (ORO) staining, respectively. The effects of SE inhibitors, locked nucleic acid-mediated enhancer RNA (eRNA) knockdown, and small interfering RNA-mediated knockdown of KLF6 on adipogenesis and adipogenic gene levels were evaluated. Chromatin immunoprecipitation assays were performed to identify transcriptional regulators binding to the promoter regions of KLF6 and the adipogenesis-inhibitory Delta-like non-canonical Notch ligand 1 (DLK1) gene during adipogenesis.
Results: In silico screening identified KLF6 as an obesity-susceptibility gene associated with single-nucleotide polymorphisms and located within the domain of SE_00159, which was activated in adipocytes. AIM-cultured hADSCs exhibited time-dependent increases in KLF6 mRNA and protein expression. During adipogenesis, the transcription factor peroxisome proliferator-activated receptor gamma (PPARγ) bound to the KLF6 promoter. Treatment with the SE inhibitor JQ1 resulted in a dose-dependent decrease in KLF6 mRNA expression and reduced ORO staining. Knockdown of eRNA expressed from the SE_00159 domain decreased KLF6 levels during adipogenesis. Consistently, KLF6 knockdown during hADSC adipogenesis downregulated the adipogenic genes PPARG and CEBPA, while upregulating DLK1. Additionally, KLF6 together with histone deacetylase (HDAC)3 bound to the DLK1 promoter and concomitantly caused dissociation of histone acetyltransferase p300 during adipogenesis.
Conclusions: SE activation upregulates KLF6 through PPARγ/p300- and eRNA-mediated transcriptional induction during hADSC adipogenesis. KLF6, in turn, represses DLK1 expression through recruitment of HDAC3 to the promoter and p300 dissociation, thereby facilitating adipocyte differentiation. These findings support a working model in which the epigenetic regulation of KLF6 and DLK1 as a potential therapeutic axis in human obesity.
{"title":"Pivotal contribution of super-enhancer-driven KLF6 expression to the adipogenesis of human adipose-derived stem cells.","authors":"Mai-Phuong Nguyen, Kaoru Yamagata, Anh Phuong Nguyen, Tong Zhang, Hidenori Sakai, Uyen Thi Ngo, Yu Shan, Takashi Otsuka, Ngo Thi Dieu Huong, Takafumi Aritomi, Meng Yuan, Shigeaki Kato, Yoshiya Tanaka, Shingo Nakayamada","doi":"10.1186/s41232-026-00406-8","DOIUrl":"10.1186/s41232-026-00406-8","url":null,"abstract":"<p><strong>Background: </strong>Super-enhancers (SEs), characterized by dense clusters of enhancer elements enriched with transcriptional activator binding sites, are involved in cell differentiation. However, little is known about SE-mediated regulation of adipogenic genes. The aim of this study was to elucidate the functional role of the KLF6-proximal SE during the adipogenesis of human adipose-derived stem cells (hADSCs).</p><p><strong>Methods: </strong>Adipogenic induction medium (AIM) was used for differentiation of hADSCs into adipocytes, which were evaluated for adipogenic gene expression and adipogenesis using quantitative PCR and Oil Red O (ORO) staining, respectively. The effects of SE inhibitors, locked nucleic acid-mediated enhancer RNA (eRNA) knockdown, and small interfering RNA-mediated knockdown of KLF6 on adipogenesis and adipogenic gene levels were evaluated. Chromatin immunoprecipitation assays were performed to identify transcriptional regulators binding to the promoter regions of KLF6 and the adipogenesis-inhibitory Delta-like non-canonical Notch ligand 1 (DLK1) gene during adipogenesis.</p><p><strong>Results: </strong>In silico screening identified KLF6 as an obesity-susceptibility gene associated with single-nucleotide polymorphisms and located within the domain of SE_00159, which was activated in adipocytes. AIM-cultured hADSCs exhibited time-dependent increases in KLF6 mRNA and protein expression. During adipogenesis, the transcription factor peroxisome proliferator-activated receptor gamma (PPARγ) bound to the KLF6 promoter. Treatment with the SE inhibitor JQ1 resulted in a dose-dependent decrease in KLF6 mRNA expression and reduced ORO staining. Knockdown of eRNA expressed from the SE_00159 domain decreased KLF6 levels during adipogenesis. Consistently, KLF6 knockdown during hADSC adipogenesis downregulated the adipogenic genes PPARG and CEBPA, while upregulating DLK1. Additionally, KLF6 together with histone deacetylase (HDAC)3 bound to the DLK1 promoter and concomitantly caused dissociation of histone acetyltransferase p300 during adipogenesis.</p><p><strong>Conclusions: </strong>SE activation upregulates KLF6 through PPARγ/p300- and eRNA-mediated transcriptional induction during hADSC adipogenesis. KLF6, in turn, represses DLK1 expression through recruitment of HDAC3 to the promoter and p300 dissociation, thereby facilitating adipocyte differentiation. These findings support a working model in which the epigenetic regulation of KLF6 and DLK1 as a potential therapeutic axis in human obesity.</p>","PeriodicalId":94041,"journal":{"name":"Inflammation and regeneration","volume":" ","pages":"5"},"PeriodicalIF":0.0,"publicationDate":"2026-01-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12829020/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146000239","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.1186/s41232-026-00405-9
Gyohei Egawa
Two-photon excitation microscopy has become an important technique in dermatologic research, providing high-resolution imaging of living skin and its immune responses. Unlike conventional histology, two-photon microscopy allows direct observation of living tissues in real time at cellular resolution. This method enables the visualization of keratinocyte organization, skin appendages such as hair follicles and sebaceous glands, and the vascular, lymphatic, and neural networks within the dermis. It has also revealed dynamic immune processes in the skin. Clinical application is still limited by safety concerns and the high cost of equipment. Nonetheless, strategies based on autofluorescence, melanin scattering, and second harmonic generation (SHG) have been explored to visualize collagen and fibrosis in the dermis. This review summarizes the structural, functional, and translational aspects of two-photon skin imaging. We outline the technical principles, applications in animal and human studies, and potential implications for dermatologic research and clinical diagnosis.
{"title":"Live imaging of skin immunity using two-photon microscopy: a short review.","authors":"Gyohei Egawa","doi":"10.1186/s41232-026-00405-9","DOIUrl":"10.1186/s41232-026-00405-9","url":null,"abstract":"<p><p>Two-photon excitation microscopy has become an important technique in dermatologic research, providing high-resolution imaging of living skin and its immune responses. Unlike conventional histology, two-photon microscopy allows direct observation of living tissues in real time at cellular resolution. This method enables the visualization of keratinocyte organization, skin appendages such as hair follicles and sebaceous glands, and the vascular, lymphatic, and neural networks within the dermis. It has also revealed dynamic immune processes in the skin. Clinical application is still limited by safety concerns and the high cost of equipment. Nonetheless, strategies based on autofluorescence, melanin scattering, and second harmonic generation (SHG) have been explored to visualize collagen and fibrosis in the dermis. This review summarizes the structural, functional, and translational aspects of two-photon skin imaging. We outline the technical principles, applications in animal and human studies, and potential implications for dermatologic research and clinical diagnosis.</p>","PeriodicalId":94041,"journal":{"name":"Inflammation and regeneration","volume":" ","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12797459/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145961121","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-06DOI: 10.1186/s41232-025-00403-3
Kentaro Miyamoto, Tomohisa Sujino
Inflammatory bowel disease (IBD) encompasses chronic, relapsing inflammatory disorders of the gastrointestinal tract, which are driven by intricate interactions between the host immune system and intestinal microbiota. Recent studies have revealed that microbiota-derived D-amino acids (D-AAs), once considered biologically inert, play critical roles in maintaining mucosal homeostasis and modulating immune responses. These metabolites, which are increasingly classified as postbiotics, directly influence epithelial barrier integrity, immune cell activity, and microbial ecology. In this review, we summarize the current insights into the biosynthesis, bacterial functions, and immunological implications of D-AAs in the gut, with a particular focus on their involvement in IBD pathogenesis. Specific D-AAs, such as D-alanine, contribute to bacterial cell wall integrity and quorum sensing and interact with host immune cells, alter microbial communities, and regulate mucosal barrier function. Evidence from both human studies and murine models highlights how disrupted D-AAs' metabolism through dysbiosis or impaired host sensing via enzymes such as D-amino acid oxidase (DAO) exacerbates inflammation. Finally, we discuss the translational potential of D-AAs as non-invasive biomarkers and therapeutic targets in IBD, emphasizing the need for integrative multi-omics approaches that connect microbial metabolism with host immune regulation and disease outcomes.
{"title":"Microbiota-derived D-amino acids in intestinal homeostasis and inflammatory bowel disease.","authors":"Kentaro Miyamoto, Tomohisa Sujino","doi":"10.1186/s41232-025-00403-3","DOIUrl":"10.1186/s41232-025-00403-3","url":null,"abstract":"<p><p>Inflammatory bowel disease (IBD) encompasses chronic, relapsing inflammatory disorders of the gastrointestinal tract, which are driven by intricate interactions between the host immune system and intestinal microbiota. Recent studies have revealed that microbiota-derived D-amino acids (D-AAs), once considered biologically inert, play critical roles in maintaining mucosal homeostasis and modulating immune responses. These metabolites, which are increasingly classified as postbiotics, directly influence epithelial barrier integrity, immune cell activity, and microbial ecology. In this review, we summarize the current insights into the biosynthesis, bacterial functions, and immunological implications of D-AAs in the gut, with a particular focus on their involvement in IBD pathogenesis. Specific D-AAs, such as D-alanine, contribute to bacterial cell wall integrity and quorum sensing and interact with host immune cells, alter microbial communities, and regulate mucosal barrier function. Evidence from both human studies and murine models highlights how disrupted D-AAs' metabolism through dysbiosis or impaired host sensing via enzymes such as D-amino acid oxidase (DAO) exacerbates inflammation. Finally, we discuss the translational potential of D-AAs as non-invasive biomarkers and therapeutic targets in IBD, emphasizing the need for integrative multi-omics approaches that connect microbial metabolism with host immune regulation and disease outcomes.</p>","PeriodicalId":94041,"journal":{"name":"Inflammation and regeneration","volume":" ","pages":"3"},"PeriodicalIF":0.0,"publicationDate":"2026-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12805777/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145907330","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Induced pluripotent stem cell (iPSC)-derived T cells offer a renewable source for off-the-shelf immunotherapy. With the advent of the artificial thymic organoid (ATO) method, the in vitro differentiation of CD4+ T cells from iPSCs has also become feasible. CD4⁺ T cells have shown superior longevity, resistance to exhaustion, and helper functions in primary settings, but whether iPSC-derived CD4⁺ T cells retain these features remains unclear.
Methods: In this study, CD4⁺ T cells were differentiated from human iPSCs using the ATO system. Primary T cells served as controls to evaluate the phenotypic and activation features of iPSC-derived CD4⁺ and CD8⁺ T cells. To assess antitumor function, we generated CD19-BBζ CAR-iPSC-T cells and employed a hematologic malignancy model using NALM6 acute lymphoblastic leukemia (ALL) cells. Both short-term and long-term cytotoxicity assays were conducted to compare iPSC-derived CD4⁺ and CD8⁺ T cells in terms of killing efficiency, cytokine secretion, persistence, exhaustion phenotype, and proliferative capacity. The helper function of iPSC-derived CD4⁺ T cells toward CD8⁺ T cells was further evaluated by Ki-67 staining and proliferation assays. Statistical analyses were performed using GraphPad Prism.
Results: Our study demonstrated that iPSC-derived CD4⁺ T cells exhibited both helper- and cytotoxic-like features. Compared with iPSC-derived CD8⁺ T cells or CD4⁺/CD8⁺ mixtures, iPSC-derived CD4⁺ T cells showed superior proliferation, cytokine secretion, and sustained cytotoxicity following CAR transduction. They also promoted the expansion of iPSC-derived CD8⁺ T cells and displayed helper-like functions with increased resistance to exhaustion.
Conclusions: Although not identical to primary CD4⁺ T cells, iPSC-derived CD4⁺ T cells recapitulated key functional advantages, especially sustained antitumor activity, supporting their value as a renewable, off-the-shelf source for next-generation CAR-T therapies.
{"title":"Adaptive-like CAR-iPSC-CD4⁺ T cells outperform CD8⁺ counterparts in sustained ALL control.","authors":"Qingyi Guo, Chaoqi Zhang, Bo Wang, Shoichi Iriguchi, Akihiro Ishikawa, Atsutaka Minagawa, Tomoko Ishii, Yohei Kawai, Shin Kaneko","doi":"10.1186/s41232-025-00402-4","DOIUrl":"10.1186/s41232-025-00402-4","url":null,"abstract":"<p><strong>Background: </strong>Induced pluripotent stem cell (iPSC)-derived T cells offer a renewable source for off-the-shelf immunotherapy. With the advent of the artificial thymic organoid (ATO) method, the in vitro differentiation of CD4<sup>+</sup> T cells from iPSCs has also become feasible. CD4⁺ T cells have shown superior longevity, resistance to exhaustion, and helper functions in primary settings, but whether iPSC-derived CD4⁺ T cells retain these features remains unclear.</p><p><strong>Methods: </strong>In this study, CD4⁺ T cells were differentiated from human iPSCs using the ATO system. Primary T cells served as controls to evaluate the phenotypic and activation features of iPSC-derived CD4⁺ and CD8⁺ T cells. To assess antitumor function, we generated CD19-BBζ CAR-iPSC-T cells and employed a hematologic malignancy model using NALM6 acute lymphoblastic leukemia (ALL) cells. Both short-term and long-term cytotoxicity assays were conducted to compare iPSC-derived CD4⁺ and CD8⁺ T cells in terms of killing efficiency, cytokine secretion, persistence, exhaustion phenotype, and proliferative capacity. The helper function of iPSC-derived CD4⁺ T cells toward CD8⁺ T cells was further evaluated by Ki-67 staining and proliferation assays. Statistical analyses were performed using GraphPad Prism.</p><p><strong>Results: </strong>Our study demonstrated that iPSC-derived CD4⁺ T cells exhibited both helper- and cytotoxic-like features. Compared with iPSC-derived CD8⁺ T cells or CD4⁺/CD8⁺ mixtures, iPSC-derived CD4⁺ T cells showed superior proliferation, cytokine secretion, and sustained cytotoxicity following CAR transduction. They also promoted the expansion of iPSC-derived CD8⁺ T cells and displayed helper-like functions with increased resistance to exhaustion.</p><p><strong>Conclusions: </strong>Although not identical to primary CD4⁺ T cells, iPSC-derived CD4⁺ T cells recapitulated key functional advantages, especially sustained antitumor activity, supporting their value as a renewable, off-the-shelf source for next-generation CAR-T therapies.</p>","PeriodicalId":94041,"journal":{"name":"Inflammation and regeneration","volume":" ","pages":"4"},"PeriodicalIF":0.0,"publicationDate":"2026-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12805770/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145897160","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-12DOI: 10.1186/s41232-025-00401-5
Hiroshi Kanno, Zhiying Liu, Rio Sato, Hidenori Endo, Kuniyasu Niizuma, Keisuke Goda
High-throughput single-cell analysis and screening have become essential tools in life science research. Imaging flow cytometry, in particular, enables large-scale image-based profiling of heterogeneous cell populations, allowing statistical analysis of cellular morphology, subcellular features, and functional responses. However, its analytical capability is often limited by the use of conventional two-dimensional (2D) image sensors. In this review, we highlight recent advances in single-pixel imaging flow cytometry, which replaces 2D image sensors with single-pixel photodetectors. This approach offers advantages in sensitivity, flexibility, and speed in imaging system design and has been implemented in various optical configurations to achieve high-throughput single-cell imaging. We first introduce its key techniques, then outline representative biomedical applications, including cancer and COVID-19 research, and finally discuss current limitations and prospects for future developments. Single-pixel imaging flow cytometry is expected to serve as a versatile platform supporting both basic and translational studies in diverse biomedical applications.
{"title":"Single-pixel imaging flow cytometry for biomedical research.","authors":"Hiroshi Kanno, Zhiying Liu, Rio Sato, Hidenori Endo, Kuniyasu Niizuma, Keisuke Goda","doi":"10.1186/s41232-025-00401-5","DOIUrl":"10.1186/s41232-025-00401-5","url":null,"abstract":"<p><p>High-throughput single-cell analysis and screening have become essential tools in life science research. Imaging flow cytometry, in particular, enables large-scale image-based profiling of heterogeneous cell populations, allowing statistical analysis of cellular morphology, subcellular features, and functional responses. However, its analytical capability is often limited by the use of conventional two-dimensional (2D) image sensors. In this review, we highlight recent advances in single-pixel imaging flow cytometry, which replaces 2D image sensors with single-pixel photodetectors. This approach offers advantages in sensitivity, flexibility, and speed in imaging system design and has been implemented in various optical configurations to achieve high-throughput single-cell imaging. We first introduce its key techniques, then outline representative biomedical applications, including cancer and COVID-19 research, and finally discuss current limitations and prospects for future developments. Single-pixel imaging flow cytometry is expected to serve as a versatile platform supporting both basic and translational studies in diverse biomedical applications.</p>","PeriodicalId":94041,"journal":{"name":"Inflammation and regeneration","volume":"45 1","pages":"36"},"PeriodicalIF":0.0,"publicationDate":"2025-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12699816/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145746095","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-02DOI: 10.1186/s41232-025-00400-6
Takaya Togo, Hiroyoshi Fujioka, Mako Kamiya
Bond-selective vibrational imaging techniques, such as Raman spectroscopy, are opening up many applications that were previously considered impossible or inaccessible by other means, such as fluorescence imaging. In particular, vibrational microscopy offers unique advantages, such as the ability to perform highly multiplexed, label-free imaging. Indeed, recent advances in optical and chemical technologies have made it possible to image biological phenomena at the cellular level with high sensitivity, high resolution, and high specificity. Applications of vibrational microscopy both in biological research and in medicine, including the detection of pathological lesions, are expanding rapidly. Here, we provide a general overview of Raman microscopy, and we review recent progress in cutting-edge applications, including label-free imaging and the development of small Raman tags, Raman probes enabling highly sensitive ultra-multiplexed observation, and functional Raman probes.
{"title":"Recent advances in Raman probes for multiplexed bioimaging.","authors":"Takaya Togo, Hiroyoshi Fujioka, Mako Kamiya","doi":"10.1186/s41232-025-00400-6","DOIUrl":"10.1186/s41232-025-00400-6","url":null,"abstract":"<p><p>Bond-selective vibrational imaging techniques, such as Raman spectroscopy, are opening up many applications that were previously considered impossible or inaccessible by other means, such as fluorescence imaging. In particular, vibrational microscopy offers unique advantages, such as the ability to perform highly multiplexed, label-free imaging. Indeed, recent advances in optical and chemical technologies have made it possible to image biological phenomena at the cellular level with high sensitivity, high resolution, and high specificity. Applications of vibrational microscopy both in biological research and in medicine, including the detection of pathological lesions, are expanding rapidly. Here, we provide a general overview of Raman microscopy, and we review recent progress in cutting-edge applications, including label-free imaging and the development of small Raman tags, Raman probes enabling highly sensitive ultra-multiplexed observation, and functional Raman probes.</p>","PeriodicalId":94041,"journal":{"name":"Inflammation and regeneration","volume":" ","pages":"35"},"PeriodicalIF":0.0,"publicationDate":"2025-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12676899/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145663036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-02DOI: 10.1186/s41232-025-00399-w
Yuki Imai, Masaru Takeshita, Koji Suzuki, Hiroyuki Fukui, Kazunori Furuhashi, Kotaro Matsumoto, Jun Kikuchi, Keiko Yoshimoto, Yuko Kaneko
Background: Anti-survival of motor neuron (SMN) antibodies have recently been identified in rheumatic and musculoskeletal diseases (RMDs), notably mixed connective tissue disease (MCTD). However, their immunological characteristics, prevalence, and clinical relevance beyond MCTD remain poorly understood. This study aimed to elucidate the clinical significance of anti-SMN antibodies in a wide spectrum of RMDs.
Methods: We assessed anti-SMN antibodies and antibody-producing cells using Western blotting and immunofluorescence staining with recombinant SMN complexes. Serum anti-SMN antibody titers were measured using a recombinant SMN complex-bound magnetic bead assay in 906 serum samples from patients with 16 types of RMDs and healthy controls. Clinical associations and treatment responses were analyzed.
Results: Western blotting using patients' sera confirmed SMN-specific antibodies. Immunofluorescence staining identified anti-SMN antibody-producing plasma cells in an MCTD patient's lymph node. Anti-SMN antibodies were detected in 36.7% of MCTD, 10.6% of systemic lupus erythematosus (SLE), and 2.4% of systemic sclerosis patients, while none of the healthy controls were positive. Antibody titers were higher against the SMN complex than individual components, highlighting the importance of the complex structure. In MCTD, antibody positivity was strongly correlated with interstitial lung disease (90.9% vs. 36.8%, P = .013). In SLE, antibody-positive patients had significantly lower white blood cell counts and complement levels, higher anti-ds-DNA antibody titer, and higher prevalence of serositis (35.0% vs. 11.3%), gastrointestinal involvement (15.0% vs. 2.4%), nephritis (70.0% vs. 30.4%), and higher median SLE Disease Activity Index scores (19.5 vs. 5.0) compared to antibody-negative patients (all P < .05). Antibody titers decreased after treatment (- 71.5% at 3 months, P = .010) and increased upon relapse.
Conclusions: Anti-SMN antibodies are prevalent in MCTD and SLE. Consistent with prior studies, their titers in MCTD were associated with distinct clinical features. Importantly, we newly demonstrate that in SLE, anti-SMN antibody levels correlate with immune complex-related manifestations and disease activity, providing a novel and clinically significant insight. These findings highlight their potential as biomarkers for disease stratification, organ involvement, and monitoring disease progression in RMDs.
背景:最近在风湿病和肌肉骨骼疾病(RMDs),特别是混合性结缔组织病(MCTD)中发现了运动神经元(SMN)抗存活抗体。然而,它们的免疫学特征、患病率和MCTD以外的临床相关性仍然知之甚少。本研究旨在阐明抗smn抗体在广泛的RMDs中的临床意义。方法:采用Western blotting和重组SMN复合物免疫荧光染色法检测抗SMN抗体和产生抗体的细胞。采用重组SMN复合物结合磁珠法测定16种RMDs患者和健康对照906份血清样本的血清抗SMN抗体滴度。分析临床关联和治疗反应。结果:Western blotting使用患者血清确认smn特异性抗体。免疫荧光染色鉴定MCTD患者淋巴结中产生抗smn抗体的浆细胞。36.7%的MCTD、10.6%的系统性红斑狼疮(SLE)和2.4%的系统性硬化症患者检测到抗smn抗体,而健康对照组均无阳性。针对SMN复合物的抗体滴度高于单个成分,突出了复合物结构的重要性。在MCTD中,抗体阳性与间质性肺疾病密切相关(90.9%比36.8%,P = 0.013)。在SLE中,抗体阳性患者的白细胞计数和补体水平显著降低,抗ds- dna抗体滴度较高,血清炎(35.0% vs. 11.3%)、胃肠道受累(15.0% vs. 2.4%)、肾炎(70.0% vs. 30.4%)的患病率较高,SLE疾病活动指数中位数评分较高(19.5 vs. 5.0)(所有P结论:抗smn抗体在MCTD和SLE中普遍存在)。与先前的研究一致,它们在MCTD中的滴度与不同的临床特征相关。重要的是,我们最近证明,在SLE中,抗smn抗体水平与免疫复合物相关的表现和疾病活动相关,提供了一个新颖的和具有临床意义的见解。这些发现强调了它们作为rmd疾病分层、器官受累和监测疾病进展的生物标志物的潜力。
{"title":"Anti-survival of motor neuron antibodies in rheumatic and musculoskeletal diseases: prevalence, clinical associations, and biomarker potential, with novel insights into disease activity in SLE.","authors":"Yuki Imai, Masaru Takeshita, Koji Suzuki, Hiroyuki Fukui, Kazunori Furuhashi, Kotaro Matsumoto, Jun Kikuchi, Keiko Yoshimoto, Yuko Kaneko","doi":"10.1186/s41232-025-00399-w","DOIUrl":"10.1186/s41232-025-00399-w","url":null,"abstract":"<p><strong>Background: </strong>Anti-survival of motor neuron (SMN) antibodies have recently been identified in rheumatic and musculoskeletal diseases (RMDs), notably mixed connective tissue disease (MCTD). However, their immunological characteristics, prevalence, and clinical relevance beyond MCTD remain poorly understood. This study aimed to elucidate the clinical significance of anti-SMN antibodies in a wide spectrum of RMDs.</p><p><strong>Methods: </strong>We assessed anti-SMN antibodies and antibody-producing cells using Western blotting and immunofluorescence staining with recombinant SMN complexes. Serum anti-SMN antibody titers were measured using a recombinant SMN complex-bound magnetic bead assay in 906 serum samples from patients with 16 types of RMDs and healthy controls. Clinical associations and treatment responses were analyzed.</p><p><strong>Results: </strong>Western blotting using patients' sera confirmed SMN-specific antibodies. Immunofluorescence staining identified anti-SMN antibody-producing plasma cells in an MCTD patient's lymph node. Anti-SMN antibodies were detected in 36.7% of MCTD, 10.6% of systemic lupus erythematosus (SLE), and 2.4% of systemic sclerosis patients, while none of the healthy controls were positive. Antibody titers were higher against the SMN complex than individual components, highlighting the importance of the complex structure. In MCTD, antibody positivity was strongly correlated with interstitial lung disease (90.9% vs. 36.8%, P = .013). In SLE, antibody-positive patients had significantly lower white blood cell counts and complement levels, higher anti-ds-DNA antibody titer, and higher prevalence of serositis (35.0% vs. 11.3%), gastrointestinal involvement (15.0% vs. 2.4%), nephritis (70.0% vs. 30.4%), and higher median SLE Disease Activity Index scores (19.5 vs. 5.0) compared to antibody-negative patients (all P < .05). Antibody titers decreased after treatment (- 71.5% at 3 months, P = .010) and increased upon relapse.</p><p><strong>Conclusions: </strong>Anti-SMN antibodies are prevalent in MCTD and SLE. Consistent with prior studies, their titers in MCTD were associated with distinct clinical features. Importantly, we newly demonstrate that in SLE, anti-SMN antibody levels correlate with immune complex-related manifestations and disease activity, providing a novel and clinically significant insight. These findings highlight their potential as biomarkers for disease stratification, organ involvement, and monitoring disease progression in RMDs.</p>","PeriodicalId":94041,"journal":{"name":"Inflammation and regeneration","volume":" ","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2025-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12777490/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145656654","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}