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State of the Practice for Medical Imaging Software Based on Open Source Repositories. 基于开源存储库的医学成像软件实践现状。
Pub Date : 2025-01-01 DOI: 10.1615/CritRevBiomedEng.2025057015
Spencer Smith, Ao Dong, Jacques Carette, Michael D Noseworthy

We review the state of the practice for the development of medical imaging (MI) software based on data available in open-source repositories. We selected 29 projects from 48 candidates and assessed nine software qualities by answering 108 questions for each. Using the analytic hierarchy process (AHP) on the quantitative data, we ranked the MI software. The top five are 3D Slicer, ImageJ, Fiji, OHIF Viewer, and ParaView. This is consistent with the community's view, with four of these also appearing in the top five using GitHub metrics (stars per year). The quality and quantity of documentation present in a project correlate quite well with its popularity. Generally, MI software is in a healthy state: in the repositories, we observed 88% of the documentation artifacts recommended by research software development guidelines, and 100% of MI projects use version control tools. However, the current state of the practice deviates from existing guidelines as some recommended artifacts are rarely present (such as a test plan, requirements' specification, and code style guidelines), low usage of continuous integration (17% of the projects), low use of unit testing (~ 50% of projects), and room for improvement with documentation. From developer interviews, we identified seven concerns: lack of development time, lack of funding, technology hurdles, correctness, usability, maintainability, and reproducibility. We recommend increasing effort on documentation, increasing testing by enriching datasets, increasing continuous integration, moving to web applications, employing linters, using peer reviews, and designing for change.

我们回顾了基于开源存储库中可用数据的医学成像(MI)软件开发的实践状态。我们从48个候选项目中选择了29个项目,并通过回答每个项目108个问题来评估9个软件质量。运用层次分析法(AHP)对定量数据进行排序。前五名分别是3D切片器、ImageJ、Fiji、oif Viewer和ParaView。这与社区的观点是一致的,其中四个也出现在GitHub指标(每年星级)的前五名中。项目中文档的质量和数量与其受欢迎程度密切相关。一般来说,MI软件处于健康状态:在存储库中,我们观察到88%的研究软件开发指南推荐的文档工件,并且100%的MI项目使用版本控制工具。然而,实践的当前状态偏离了现有的指导方针,因为一些推荐的工件很少出现(比如测试计划、需求规范和代码风格指导),持续集成的使用率低(17%的项目),单元测试的使用率低(约50%的项目),以及文档的改进空间。从开发人员访谈中,我们确定了7个关注点:缺乏开发时间、缺乏资金、技术障碍、正确性、可用性、可维护性和可再现性。我们建议增加在文档上的工作,通过丰富数据集来增加测试,增加持续集成,迁移到web应用程序,使用lint,使用同行评审,以及为变化而设计。
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引用次数: 0
Diffusion Models for Oral Drug Delivery to the Colon Using Porous Materials. 利用多孔材料口服给药结肠的扩散模型。
Pub Date : 2025-01-01 DOI: 10.1615/CritRevBiomedEng.2025056706
Austin Evers, Symone L M Alexander

Oral administration of drugs is patient-preferred due to ease of administration, less invasive procedures, and overall simplicity. However, traditional oral administration of drugs can lead to ineffective treatment and adverse side effects due to the physiological barriers of the gastrointestinal tract. Because of this, colon-specific drug delivery vehicles synthesized from polymeric, porous materials are being designed to control drug release to the colon. Specifically, these porous matrices include hydrogels, microgels/microparticles, and nanoparticle drug delivery systems. Furthermore, these formulations have been studied on their survivability and efficacy in delivery of the drugs to the colon. This review paper is focused on diffusion models for diffusion and drug release and how the choice of matrix material determines what drug release profiles are possible. Our goal is to provide a resource for identifying, applying, and advancing models for drug diffusion to the colon to help guide experimental design of drug delivery vehicles for intestinal pathologies.

口服给药是患者的首选,因为易于给药,微创的程序,和整体简单。然而,由于胃肠道的生理屏障,传统的口服药物可能导致治疗无效和不良副作用。正因为如此,由聚合物、多孔材料合成的结肠特异性药物递送载体被设计用来控制药物向结肠的释放。具体来说,这些多孔基质包括水凝胶、微凝胶/微颗粒和纳米颗粒药物输送系统。此外,还研究了这些制剂的生存能力和将药物输送到结肠的有效性。本文综述了扩散和药物释放的扩散模型,以及基质材料的选择如何决定药物释放的可能性。我们的目标是为识别、应用和推进药物扩散到结肠的模型提供资源,以帮助指导针对肠道病变的药物递送载体的实验设计。
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引用次数: 0
Microwave Imaging Systems for Tumor Detection: A Comprehensive Review of Antenna Designs and Imaging Algorithms. 用于肿瘤检测的微波成像系统:天线设计和成像算法的综合综述。
Pub Date : 2025-01-01 DOI: 10.1615/CritRevBiomedEng.2024055777
Sujit Tripathy, Vishwajeet Mukherjee, Pranaba K Mishro

In the past decade, microwave imaging (MWI), employing advanced antenna-based systems, has emerged as a cutting-edge, non-invasive approach for pathological diagnosis. Multiple experimental studies suggest that MWI proposes promising results for early-stage tumor diagnosis. Recent studies on MWI show the importance of antenna types and configuration. However, it is observed that a very limited research has focused on exploring the large classes of antennas used in detail. In this review, a systematic study and firsthand classification of the antennas used, as the most important aspect of an MWI system, is proposed. The classification includes fundamental antennas, microstrip antennas, metamaterial/metastructure antennas, specialized antennas, and 3D antennas. A cross-sectional study is performed to depict the potential relationship between antenna type and efficiency of the MWI systems. This goal is achieved by quantitatively analyzing the gain and operating bandwidth, antenna configuration, and application models. Further, a critical analysis is presented on different signal processing and imaging algorithms for synthetic image generation. This review presents a modular analysis of MWI systems and draws several conclusions on the effectiveness of each essential module for a reliable MWI system. It also addresses the challenges, scope of improvement in the MWI systems, and prospects for the technology's integration into clinical practice.

在过去的十年中,采用先进天线系统的微波成像(MWI)已成为一种前沿的、非侵入性的病理诊断方法。多项实验研究表明,MWI在早期肿瘤诊断中具有良好的效果。近年来对MWI的研究表明了天线类型和配置的重要性。然而,据观察,很少有研究集中在详细探索大类别的天线上。在这篇综述中,提出了一个系统的研究和第一手分类所使用的天线,作为一个多wi系统的最重要的方面。分类包括基波天线、微带天线、超材料/元结构天线、专用天线和3D天线。进行了一项横断面研究,以描述天线类型与MWI系统效率之间的潜在关系。这一目标是通过定量分析增益和工作带宽、天线配置和应用模型来实现的。此外,对合成图像生成的不同信号处理和成像算法进行了关键分析。本文介绍了MWI系统的模块化分析,并得出了关于可靠的MWI系统的每个基本模块的有效性的几个结论。它还讨论了MWI系统的挑战、改进范围以及该技术融入临床实践的前景。
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引用次数: 0
Ureteral Peristaltic Flows in the Presence of Microliths: A Review. 输尿管存在微结石时的蠕动流动:综述。
Pub Date : 2025-01-01 DOI: 10.1615/CritRevBiomedEng.2025055048
P Deepalakshmi, Dharmendra Tripathi, G Shankar, O Anwar Bég, Sireetorn Kuharat, E P Siva

A detailed review is presented on research contributions in peristaltic transport in the human ureter in the presence of microliths. The studies reviewed are differentiated based on methodologies deployed, namely analytical, numerical and CFD simulation techniques and also experimental (clinical) investigations. Various 2D and 3D models are discussed along with more advanced fluid structure interaction (FSI) studies. The propagation of the incompressible urine flow results in reflux nephropathy. As such, the peristaltic waves spread near the outlet of the tube which manifests in a depletion in the flow rate. Due to the maximum pressure gradient, urine backflow occurs. A full understanding of ureter reflux has however not yet been achieved. This review surveys approximately 101 journals addressing the obstruction inside the ureter and the associated hydrodynamics. As such it consolidates many different efforts in the field in a single source which will serve as a guide to both clinical researchers (e.g., physicians) and also mathematical and engineering research groups and is hoped that it will assist in the development of new integrated approaches for robust treatments. The extensive survey of the scientific literature in this review article confirms that stones (monoliths) detected in the proximal part of the nephron are generally larger than those identified in distal parts. These papers defined the position and shapes of microliths. Due to bolus transport inside the ureter flow, varying pressure and velocity balances are also appraised. The more advanced FSI simulations provide much-needed insight into visualizing actual ureteral transport. Some future pathways for collaborative efforts in improving healthcare for patients are also suggested.

本文对微结石存在时输尿管蠕动运输的研究成果进行了详细的综述。所回顾的研究根据所采用的方法进行了区分,即分析、数值和CFD模拟技术以及实验(临床)调查。讨论了各种二维和三维模型以及更先进的流体结构相互作用(FSI)研究。不可压缩尿流的传播导致反流肾病。因此,蠕动波在管道出口附近传播,表现为流速的减少。由于最大压力梯度,尿液发生回流。然而,对输尿管反流的充分了解尚未实现。本文回顾了大约101篇关于输尿管梗阻及其相关流体力学的期刊。因此,它将该领域的许多不同的努力整合在一个单一的来源中,这将作为临床研究人员(例如,医生)以及数学和工程研究小组的指南,并希望它将有助于开发新的综合方法来进行强有力的治疗。这篇综述文章中对科学文献的广泛调查证实,在肾元近端发现的结石(巨石)通常比在远端发现的结石大。这些论文定义了微石的位置和形状。由于栓剂在输尿管内的运输,压力和速度平衡也会发生变化。更先进的FSI模拟为实际输尿管运输的可视化提供了急需的洞察力。本文还提出了未来合作改善患者医疗保健的一些途径。
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引用次数: 0
Toward Breast Tumor Detection: A Miniature Antenna for Industrial, Scientific, and Medical (ISM) Band Implantation. 乳房肿瘤检测:用于工业、科学和医疗(ISM)波段植入的微型天线。
Pub Date : 2025-01-01 DOI: 10.1615/CritRevBiomedEng.v53.i6.30
Saidi Amaria, Nouri Keltouma, Abes Turkiya, Damou Mehdi

Breast cancer diagnosis using implantable biomedical antennas offers a promising alternative to conventional imaging techniques due to their potential for continuous monitoring and minimal invasiveness. This paper presents a miniaturized antenna with dimensions of 3 ȕ 3 ȕ 1.27 mm3, specifically designed for implantation in breast tissue to detect the presence of tumors. The objective is to evaluate the antenna's ability to detect breast tumors by first analyzing its reflection behavior (S11) in implanted conditions, both with and without tumors. Subsequently, a second external antenna is introduced in free space to assess transmission performance at varying distances. To further assess transmission performance, a second external antenna is introduced, and the system is tested at varying distances and orientations (face-to-face and side-by-side). The antenna operates at 2.45 GHz and is tested in both skin and breast tissue phantoms with embedded tumors of different sizes and positions. Key performance metrics such as S-parameters, gain, transmission coefficient, and group delay are analyzed. Simulation results show gain values of -31.28 dB in skin and -17.78 dB in breast tissue. Patient safety is confirmed through specific absorption rate (SAR) analysis, with a maximum input power of 2.3 mW. The proposed design shows strong potential for breast cancer detection due to its small size, consistent performance in various antenna positions, and compliance with SAR safety standards.

使用植入式生物医学天线诊断乳腺癌,由于其具有连续监测和最小侵入性的潜力,为传统成像技术提供了一个有希望的替代方案。本文介绍了一种尺寸为3 ~ 3 ~ 1.27 mm3的微型天线,专门用于植入乳腺组织中检测肿瘤的存在。目的是通过首先分析其在植入条件下的反射行为(S11)来评估天线检测乳腺肿瘤的能力,无论有无肿瘤。随后,在自由空间中引入第二个外部天线来评估不同距离下的传输性能。为了进一步评估传输性能,引入了第二个外部天线,并在不同距离和方向(面对面和并排)对系统进行了测试。该天线的工作频率为2.45 GHz,并在皮肤和乳房组织中进行了测试,这些组织中嵌入了不同大小和位置的肿瘤。分析了关键性能指标,如s参数、增益、传输系数和群延迟。仿真结果表明,皮肤增益值为-31.28 dB,乳腺组织增益值为-17.78 dB。通过比吸收率(SAR)分析确认患者安全,最大输入功率为2.3 mW。由于该设计体积小,在不同天线位置表现一致,并且符合SAR安全标准,因此具有很强的乳腺癌检测潜力。
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引用次数: 0
Comparative Implementation of Fractional Blood Alcohol Model by Numerical Approach. 用数值方法比较实现血液酒精分数模型。
Pub Date : 2025-01-01 DOI: 10.1615/CritRevBiomedEng.2024055033
Shyamsunder

The current article discusses several innovative and intriguing aspects of the Caputo and modified Atangana-Baleanu derivative in the Caputo sense (MABC) based on a fractional blood alcohol model. The initial concentration of alcohol in the stomach after consumption, the rate at which alcohol is absorbed into the circulation, and the rate at which the liver metabolizes alcohol are the three factors that determine the model's resolution. Utilizing the Laplace transform method and the generalized Mittag-Leffler function method (GMLFM), the analytical results of stomach alcohol concentration and blood alcohol concentration are examined. Additionally, the study comprehensively analyzes the relationship between blood and stomach alcohol concentrations through an extended series representation. Graphical representations of the impact of fractional parameters on blood and stomach alcohol concentrations are provided. The comparison analysis for both concentrations reveals novel aspects of the studied model's entire fractional derivatives. The fractional blood alcohol models presented provide significant and beneficial outcomes that may be used to forecast future information forthe medical community.

当前的文章讨论了几个创新和有趣的方面卡普托和改进Atangana-Baleanu衍生品在卡普托意义(MABC)基于分数血液酒精模型。饮酒后胃中酒精的初始浓度、酒精被血液循环吸收的速度以及肝脏代谢酒精的速度是决定模型分辨率的三个因素。利用拉普拉斯变换法和广义Mittag-Leffler函数法(GMLFM)对胃酒精浓度和血酒精浓度的分析结果进行了检验。此外,该研究通过扩展序列表示全面分析了血液和胃酒精浓度之间的关系。提供了分数参数对血液和胃酒精浓度影响的图形表示。对两种浓度的比较分析揭示了所研究模型的整个分数导数的新方面。所提出的血液酒精分数模型提供了重要和有益的结果,可用于预测医学界未来的信息。
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引用次数: 0
Innovative Ultrasound Image Denoising Using Channel Attention and Variational Autoencoders. 基于信道关注和变分自编码器的超声图像去噪方法。
Pub Date : 2025-01-01 DOI: 10.1615/CritRevBiomedEng.2025058842
Taher Slimi, Emna Ben Baoues, Anouar Ben Khalifa

Speckle noise in ultrasound images compromises image quality and hinders diagnostic accuracy. Traditional ultrasound denoising methods often struggle to preserve anatomical details while effectively reducing noise, especially under high-noise conditions. In this study, we propose an innovative approach that integrates a lightweight channel attention mechanism (LCAM) within a convolutional variational autoencoder (CVAE) framework to enhance ultrasound image denoising. The proposed approach efficiently reduces speckle noise while maintaining essential anatomical features. Comprehensive evaluations across six diverse ultrasound datasets demonstrate that the LCAM-CVAE outperforms conventional denoising techniques in both subjective image quality and objective performance metrics, including peak signal-to-noise ratio (PSNR), structural similarity index measure (SSIM), standard deviation in PSNR (SD-PSNR), standard deviation in SSIM (SD-SSIM), PSNR statistical relevance tests, and computational efficiency (CE). The LCAM-CVAE approach demonstrates exceptional performance, particularly under high-noise conditions, ensuring the preservation of key anatomical structures for accurate diagnosis. These results highlight the LCAM-CVAE approach as a robust and promising solution for ultrasound image denoising, with significant clinical potential to improve diagnostic quality in noisy environments.

斑点噪声在超声图像损害图像质量和阻碍诊断的准确性。传统的超声去噪方法往往难以在保留解剖细节的同时有效地降低噪声,特别是在高噪声条件下。在这项研究中,我们提出了一种创新的方法,将轻量级通道注意机制(LCAM)集成在卷积变分自编码器(CVAE)框架中,以增强超声图像去噪。该方法有效地降低了散斑噪声,同时保持了基本的解剖特征。对6个不同超声数据集的综合评估表明,LCAM-CVAE在主观图像质量和客观性能指标上都优于传统的去噪技术,包括峰值信噪比(PSNR)、结构相似指数测量(SSIM)、PSNR标准差(SD-PSNR)、SSIM标准差(SD-SSIM)、PSNR统计相关性测试和计算效率(CE)。LCAM-CVAE方法表现出卓越的性能,特别是在高噪声条件下,确保了关键解剖结构的保存,以进行准确的诊断。这些结果突出了LCAM-CVAE方法作为超声图像去噪的强大且有前途的解决方案,具有显著的临床潜力,可以提高嘈杂环境下的诊断质量。
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引用次数: 0
Mathematical Model of Cancer Treatment with Virotherapy and Immune System. 用病毒疗法和免疫系统治疗癌症的数学模型。
Pub Date : 2025-01-01 DOI: 10.1615/CritRevBiomedEng.2025055125
Arvind Kumar Sinha, Ambika Sahu

The global burden of cancer is rising, causing significant strain on individuals, families, and healthcare systems. Traditional treatments, such as chemotherapy and radiation, are effective but harm healthy cells and lead to side effects. In contrast, virotherapy specifically targets cancer cells, leaving healthy cells unharmed. This study presents a mathematical model of cancer treatment with viral therapy and the immune system. We show the non-negative and boundedness of the model's solution. Our findings identify five equilibrium points: free equilibrium point, two immune response-free equilibrium points, and two coexisting equilibrium points. The local and global stability of the equilibrium point is established. We show the tumor size reduction from 0.55 to 0.05 as an increase in the burst size from 0.8 to 9.0, respectively. We also explore that the proposed methodology reduces tumor size from 0.59 to 0.21 as the stimulation rate of immune response increases from 0.29 to 0.90. Thus, numerical simulations indicate that high immune response and viruses reduce tumor size. This study emphasizes the effectiveness of combining viral therapy with high immune responses in cancer patients. This study is helpful for oncologists and immunologists to understand the behavior of virotherapy and immune response to control the proliferation of different kinds of tumors.

全球癌症负担正在上升,给个人、家庭和卫生保健系统造成巨大压力。传统的治疗方法,如化疗和放疗,是有效的,但损害健康细胞并导致副作用。相反,病毒疗法专门针对癌细胞,使健康细胞不受伤害。这项研究提出了一个用病毒疗法和免疫系统治疗癌症的数学模型。我们证明了模型解的非负性和有界性。我们的研究结果确定了五个平衡点:自由平衡点,两个无免疫反应平衡点和两个共存平衡点。建立了平衡点的局部稳定性和全局稳定性。我们发现肿瘤大小从0.55减小到0.05,而爆发大小从0.8增加到9.0。我们还发现,当免疫反应的刺激率从0.29增加到0.90时,所提出的方法将肿瘤大小从0.59减少到0.21。因此,数值模拟表明,高免疫反应和病毒可减小肿瘤大小。这项研究强调了将病毒治疗与高免疫应答相结合在癌症患者中的有效性。本研究有助于肿瘤学家和免疫学家了解病毒治疗和免疫反应控制不同类型肿瘤增殖的行为。
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引用次数: 0
A Mathematical Model Evaluating the Impact of Asymptomatic COVID-19 Cases and Reinfection. 新型冠状病毒肺炎无症状感染者及再感染影响的数学模型
Pub Date : 2025-01-01 DOI: 10.1615/CritRevBiomedEng.2024056294
Arpita Devi, Asish Adak, Praveen Kumar Gupta

In this study, an epidemic model with a constant recruitment rate of susceptible individuals with a bilinear transmission rate of infection is considered. Vaccination-type treatment is inspected to minimize the impact of the disease. The asymptomatic infected and the vaccinated compartments are taken with regard to the circumstances of the coronavirus disease (COVID-19) pandemic 2020-2025. The impact of these two compartments is examined specifically to shed light on the behavioral dynamics. Local as well as the global stability of the disease-free equilibrium point and the endemic equilibrium point are examined by constructing Lyapunov functions. Hence, we prove that if the basic reproduction number is < 1, then there will be no disease in the system, and if the basic reproduction number is > 1, then the disease will persist. Sensitivity analysis is performed to identify the influential model parameters that have the greatest impact on the original reproduction number of the proposed model. The model is validated by fitting it to real data. Furthermore, we carried out numerical simulations of the model parameters and their accompanying theoretical results. To control or eliminate the effect of emerging diseases, we made several suggestions to control the most sensitive model parameters while using necessary preventive measures.

在本研究中,考虑了具有恒定易感个体招募率和双线性传染率的流行病模型。对疫苗型治疗进行检查,以尽量减少疾病的影响。根据2020-2025年新型冠状病毒病(COVID-19)大流行的情况,选取无症状感染者和接种疫苗的隔间。这两个隔间的影响被专门研究,以阐明行为动力学。通过构造Lyapunov函数检验了无病平衡点和地方性平衡点的局部稳定性和全局稳定性。因此,我们证明,如果基本繁殖数< 1,则系统中不存在疾病,如果基本繁殖数为> 1,则该疾病将持续存在。进行敏感性分析,以确定对所建议模型的原始再现数影响最大的有影响的模型参数。通过与实际数据的拟合,验证了模型的正确性。此外,我们还进行了模型参数的数值模拟和相应的理论结果。为了控制或消除新发疾病的影响,我们提出了几点建议,在采取必要的预防措施的同时控制最敏感的模型参数。
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引用次数: 0
Biomechanics of Brachial Plexus Injuries Due to Shoulder Dystocia. 肩难产所致臂丛神经损伤的生物力学。
Pub Date : 2025-01-01 DOI: 10.1615/CritRevBiomedEng.v53.i4.10
Gunter P Siegmund, Carolyn W Roberts

Brachial plexus injuries during childbirth can be devastating injuries with lifelong consequences. Here we review the biomechanical literature related to this injury and integrate it with recent epidemiological and clinical literature to better understand how intrinsic and extrinsic factors contribute to this injury. Brachial plexus palsy is caused by excessive stretching, tearing, or avulsion of the nerve fibers of the brachial plexus and can lead to temporary or permanent injury to the motor and sensory functions of the upper extremity. Compared to other maternal and fetal factors, the highest risk factor for brachial plexus palsy is shoulder dystocia. The continuum of brachial plexus injuries, from temporary impairments of the C5 and C6 nerve roots to the permanent disruption of the entire brachial plexus, is consistent with a dose-response relationship whereby higher applied birthing forces cause greater degrees of injury. The current biomechanical models of shoulder dystocia and brachial plexus strain have not been validated against experimental data and their results should be treated cautiously. Endogenous forces (e.g., uterine contractions and maternal pushing) and exogenous forces (e.g., clinician-applied traction) generate strain in the brachial plexus, but the rarity of permanent, severe injuries and the reduction of these injuries after clinician training suggest that clinician-applied forces during shoulder dystocia increase the risk of permanent, severe brachial plexus injury. There are currently no reliable biomechanical methods for determining if maternal forces or clinician-applied forces are responsible for less severe types of brachial plexus injury.

分娩时臂丛神经损伤可能会造成终生的严重后果。在这里,我们回顾了与这种损伤相关的生物力学文献,并将其与最近的流行病学和临床文献相结合,以更好地了解内在和外在因素是如何导致这种损伤的。臂丛神经麻痹是由臂丛神经纤维过度拉伸、撕裂或撕脱引起的,可导致上肢运动和感觉功能的暂时或永久性损伤。与其他母胎因素相比,臂丛神经麻痹的最高危险因素是肩难产。从C5和C6神经根的暂时性损伤到整个臂丛神经的永久性损伤,臂丛神经损伤的连续性符合一种剂量-反应关系,即施加的分娩力越大,损伤程度越大。目前肩部难产和臂丛劳伤的生物力学模型尚未得到实验数据的验证,其结果应谨慎对待。内源性力(如子宫收缩和母体推力)和外源性力(如临床应用的牵引力)在臂丛中产生张力,但永久性严重损伤的罕见以及临床医生培训后这些损伤的减少表明,肩关节难产期间临床应用的力增加了永久性严重臂丛损伤的风险。目前还没有可靠的生物力学方法来确定母力或临床施加的力是造成臂丛神经损伤的原因。
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引用次数: 0
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Critical reviews in biomedical engineering
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