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The Creation of Intensional Medication Lists Using the NHS Dictionary of Medicines and Devices. 使用英国国家医疗服务系统(NHS)的《药品与器械词典》创建内部用药清单。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241097
Gavin Jamie, Rachel Byford, Rashmi Wimalaratna, Simon de Lusignan

The identification of medications prescribed to patients in routinely collected health records is an important part of the identification of cohorts for surveillance and research. Preparations available for prescription can change frequently and this presents challenges to the maintenance of extensional or "flat lists" of medications, particularly in ongoing studies such as disease surveillance. The NHS publishes a Dictionary of Medicines and Devices weekly, listing almost all the medications available in the UK as an extension to the UK edition of SNOMED CT. We developed a method of creating intensional specifications of medications using specified active ingredients and the form of the medication. The specifications can be expressed using the SNOMED CT Expression Constraint Language, and can be used to form a library which may be used across multiple projects. We have developed intensional definitions of medication groups for all drugs likely to be used in primary care. We have shown that these can be shared as FHIR valuesets using the NHS Terminology Server. Here we show examples of expressions about medications used for neuropathic pain. We have created expressions which improve the specificity of the extraction by filtering on the form and number of ingredients.

在常规收集的健康记录中确定患者的处方药是确定监测和研究队列的重要部分。可用于处方的制剂可能会经常变化,这就给维护扩展或 "统一列表 "药物带来了挑战,尤其是在疾病监测等持续性研究中。英国国家医疗服务系统(NHS)每周都会出版一本《药品和器械词典》,其中列出了英国几乎所有的药物,作为 SNOMED CT 英国版的扩展。我们开发了一种方法,使用指定的有效成分和药物形式创建药物的内涵规范。这些规范可以使用 SNOMED CT 表达约束语言表达,并可用于形成一个可在多个项目中使用的库。我们已经为初级医疗中可能使用的所有药物开发出了药物组的内在定义。我们已经证明,这些定义可以作为 FHIR 值集使用 NHS 术语服务器进行共享。在此,我们展示了有关神经性疼痛用药的表达式示例。我们创建了表达式,通过过滤成分的形式和数量来提高提取的特异性。
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引用次数: 0
Using Deep Learning to Suggest Treatment for Proximal Humerus Fractures. 利用深度学习为肱骨近端骨折提供治疗建议
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241080
Mohammadreza Azarpira, Ihssen Belhadj, Mohammed Khodja

Proximal humeral fractures are among the most common fractures seen in emergency departments. Accurately diagnosing and selecting the most appropriate treatment for these fractures can be challenging, and consultation with a senior orthopedic surgeon can be time-consuming for both the patient and the emergency unit. We developed a machine learning model for predicting the type of treatment based on injury radiographic images. The model distinguishes between nonoperative and operative treatment options, achieving an accuracy of 86% and an interobserver reliability (kappa) of 0.722 for test-dataset, which is more than the interobserver agreement between shoulder surgeons. This model has the potential to serve as a therapeutic decision support system for the practitioners in the emergency departments to expedite treatment decisions and to reduce patients' waiting time.

肱骨近端骨折是急诊科最常见的骨折之一。对这些骨折进行准确诊断并选择最合适的治疗方法具有挑战性,而向资深骨科医生咨询对患者和急诊科来说都非常耗时。我们开发了一种机器学习模型,用于根据损伤放射影像预测治疗类型。该模型可区分非手术和手术治疗方案,准确率达 86%,测试数据集的观察者间可靠性(kappa)为 0.722,高于肩部外科医生之间的观察者间一致性。该模型有望成为急诊科医生的治疗决策支持系统,加快治疗决策的制定,减少患者的等待时间。
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引用次数: 0
Extending the Scope of Telemedicine to Podiatric Medicine. 将远程医疗的范围扩大到足病医疗。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241069
Lisa A Stojmanovski Mercieca, Cynthia Formosa, Nachiappan Chockalingam, Vincent Cassar

The COVID-19 pandemic has accelerated the adoption of telemedicine in healthcare. This study explores the feasibility of telemedicine for foot and ankle care in primary settings, using a mixed-methods approach with online questionnaires, focus groups, and interviews. Stakeholders, including patients, podiatrists, and senior healthcare managers, agreed on the need for a telemedicine service. Recommendations include creating evidence-based guidelines, providing professional training, and enhancing community education. The research highlights the necessity for structured telemedicine services, identifying gaps in existing pandemic responses and the need for further guidelines and training.

COVID-19 大流行加速了远程医疗在医疗保健领域的应用。本研究采用在线问卷调查、焦点小组和访谈等混合方法,探讨了远程医疗在基层足踝护理中的可行性。包括患者、足病医生和高级医疗管理人员在内的利益相关者一致认为有必要提供远程医疗服务。建议包括制定循证指南、提供专业培训和加强社区教育。研究强调了结构化远程医疗服务的必要性,找出了现有大流行病应对措施的不足之处,以及进一步制定指导方针和开展培训的必要性。
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引用次数: 0
Use and Evaluation of GANs for Synthetic Data Generation in Pharmacogenetics. 在药物遗传学合成数据生成中使用和评估 GANs。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241100
Dominic Aeschbacher, Jessica Meisner, Marko Miletic, Murat Sariyar

Pharmacogenetics (PGx) explores the influence of genetic variability on drug efficacy and tolerability. Synthetic Data Generation (SDG) has emerged as a promising alternative to the labor-intensive process of collecting real-world PGx data, which is required for high-qualitative prediction models. This study investigates the performance of two Generative Adversarial Network (GAN) models, CTGAN and CTAB-GAN+, in generating synthetic PGx data. The benchmarking is based on utility metrics (Hellinger distance and Random Forest accuracy) and ϵ-identifiability. Results demonstrate that synthetic data generated by CTAB-GAN+ can surpass the original dataset in terms of utility. For instance, CTAB-GAN+ achieves higher Random Forest accuracy compared to the original data, indicating better predictive performance. These improvements suggest that synthetic data not only capture the essential patterns of the original data but also enhance model generalization and prediction capabilities, providing a more robust training ground for machine learning models. Consequently, SDG offers a promising solution to address data scarcity and imbalance in pharmacogenetic research.

药物遗传学(PGx)探索基因变异对药物疗效和耐受性的影响。合成数据生成(SDG)是收集真实世界 PGx 数据这一劳动密集型过程的一种有前途的替代方法,而收集真实世界 PGx 数据是建立高质量预测模型所必需的。本研究调查了 CTGAN 和 CTAB-GAN+ 这两种生成对抗网络 (GAN) 模型在生成合成 PGx 数据方面的性能。基准测试基于实用性指标(海林格距离和随机森林准确度)和ϵ可识别性。结果表明,CTAB-GAN+ 生成的合成数据在实用性方面超过了原始数据集。例如,与原始数据相比,CTAB-GAN+ 获得了更高的随机森林准确率,这表明它具有更好的预测性能。这些改进表明,合成数据不仅能捕捉原始数据的基本模式,还能增强模型的泛化和预测能力,为机器学习模型提供更强大的训练场。因此,SDG 为解决药物遗传学研究中的数据稀缺和不平衡问题提供了一种前景广阔的解决方案。
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引用次数: 0
Mobile Health Technologies and Their Features Affecting Medication Adherence Among Cancer Patients: A Scoping Review. 影响癌症患者坚持用药的移动医疗技术及其特点:范围综述》。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241064
Abdel Rahman Alsaify, Tourjana Islam Supti, Mahmood Alzubaidi, Mowafa Househ

This scoping review explores mobile health (mHealth) technologies and their features affecting medication adherence in cancer patients. Among 11 selected studies, predominantly from the USA, mHealth tools, particularly smartphone apps, were examined for their features in managing cancer patient's medication adherence. The studies highlighted the importance of adherence in continuous cancer therapy, with mHealth tools offering reminders and interactive features, that aim to enhance patient engagement. However, the review identified research gaps, emphasizing the need for broader investigations into diverse mHealth tools beyond apps, including electronic capsules and smart pill dispensers. Additionally, it underscored the absence of information on costs, user input, integration with electronic health records, and data management. While acknowledging potential positive impacts on adherence, the review calls for more comprehensive research to substantiate these findings in clinical oncology.

本范围综述探讨了移动医疗(mHealth)技术及其对癌症患者服药依从性的影响。在主要来自美国的 11 项选定研究中,研究人员考察了移动医疗工具(尤其是智能手机应用程序)在管理癌症患者用药依从性方面的功能。这些研究强调了坚持持续癌症治疗的重要性,移动医疗工具提供了提醒和互动功能,旨在提高患者的参与度。然而,综述发现了研究空白,强调有必要对应用程序以外的各种移动医疗工具进行更广泛的调查,包括电子胶囊和智能配药机。此外,它还强调缺乏有关成本、用户输入、与电子健康记录的整合以及数据管理的信息。综述承认移动医疗对坚持用药有潜在的积极影响,但呼吁开展更全面的研究,以证实这些发现在临床肿瘤学中的应用。
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引用次数: 0
Preparing for Hospital at Home: A Review of the Current Landscape of Training Practices. 在家为住院做准备:当前培训做法回顾。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241060
Kerstin Denecke, Daniel Reichenpfader

Hospital at Home (HaH) is a model of care that provides hospital-level care in the patient's home, requiring a unique set of competencies and skills from both multidisciplinary care teams and informal caregivers. These skills are often different from those required in traditional hospital settings. The aim of this paper is to consolidate the information of HaH-related education and training to support the development of standardized curricula to ensure safe hospitalization at home. We compiled relevant information from the scientific literature on HaH approaches and studies and conducted a web search. Our results indicate that healthcare professionals are trained in short training sessions, covering specific skills needed in the HaH context. These skills comprise, among others, communication, medication safety, infection control, and wound care. Patients and their families receive training in recognizing symptoms of deterioration and self-care. Concrete guidelines or standardized training programs are still missing. Future research should thus focus on developing standardized HaH training protocols and programs for both staff and patients to ensure patient safety at home.

居家医院 (HaH) 是一种在患者家中提供医院级别护理的护理模式,需要多学科护理团队和非正规护理人员具备一系列独特的能力和技能。这些技能往往不同于传统医院环境中所需的技能。本文旨在整合与 HaH 相关的教育和培训信息,以支持标准化课程的开发,确保在家住院的安全性。我们汇编了有关 HaH 方法和研究的科学文献中的相关信息,并进行了网络搜索。我们的研究结果表明,医护人员在短期培训课程中接受的培训涵盖了在家庭医疗背景下所需的特定技能。这些技能包括沟通、用药安全、感染控制和伤口护理等。患者及其家属则接受识别病情恶化症状和自我护理方面的培训。目前仍缺乏具体的指导方针或标准化培训计划。因此,未来的研究应侧重于为医护人员和患者制定标准化的家庭护理培训协议和计划,以确保患者在家中的安全。
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引用次数: 0
Utilizing RAG and GPT-4 for Extraction of Substance Use Information from Clinical Notes. 利用 RAG 和 GPT-4 从临床笔记中提取药物使用信息。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241070
Fatemeh Shah-Mohammadi, Joseph Finkelstein

This research investigates the application of a hybrid Retrieval-Augmented Generation (RAG) and Generative Pre-trained Transformer (GPT) pipeline for extracting and categorizing substance use information from unstructured clinical notes. The aim is to enhance the accuracy and efficiency of identifying substance use mentions and determining their status in patient documentation. By integrating RAG to pre-filter and focus the input for GPT, the pipeline strategically narrows the scope of analysis to the most relevant text segments, thereby improving the precision and recall of the extraction. Utilizing the Medical Information Mart for Intensive Care III dataset, the performance of the pipeline was evaluated through manual verification, assessing various metrics including recall, precision, F1-score, and accuracy. The results demonstrated high precision rates (up to 0.99 for drug and alcohol mentions), and substantial recall (0.88 across all substances for status of the usage).

本研究调查了混合检索-增强生成(RAG)和生成预训练转换器(GPT)管道在从非结构化临床笔记中提取和分类药物使用信息方面的应用。其目的是提高识别药物使用提及并确定其在患者文档中的状态的准确性和效率。通过整合 RAG 对 GPT 的输入进行预过滤和聚焦,该管道战略性地将分析范围缩小到最相关的文本片段,从而提高了提取的精确度和召回率。利用重症监护医疗信息市场 III 数据集,通过人工验证评估了该管道的性能,评估指标包括召回率、精确度、F1 分数和准确率。结果表明,精确率很高(药物和酒精提及率高达 0.99),召回率也很高(所有物质的使用状态召回率均为 0.88)。
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引用次数: 0
A Novel Taxonomy for Navigating and Classifying Synthetic Data in Healthcare Applications. 医疗保健应用中合成数据导航和分类的新分类标准。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241104
Bram van Dijk, Saif Ul Islam, Jim Achterberg, Hafiz Muhammad Waseem, Parisis Gallos, Gregory Epiphaniou, Carsten Maple, Marcel Haas, Marco Spruit

Data-driven technologies have improved the efficiency, reliability and effectiveness of healthcare services, but come with an increasing demand for data, which is challenging due to privacy-related constraints on sharing data in healthcare contexts. Synthetic data has recently gained popularity as potential solution, but in the flurry of current research it can be hard to oversee its potential. This paper proposes a novel taxonomy of synthetic data in healthcare to navigate the landscape in terms of three main varieties. Data Proportion comprises different ratios of synthetic data in a dataset and associated pros and cons. Data Modality refers to the different data formats amenable to synthesis and format-specific challenges. Data Transformation concerns improving specific aspects of a dataset like its utility or privacy with synthetic data. Our taxonomy aims to help researchers in the healthcare domain interested in synthetic data to grasp what types of datasets, data modalities, and transformations are possible with synthetic data, and where the challenges and overlaps between the varieties lie.

数据驱动技术提高了医疗保健服务的效率、可靠性和有效性,但随之而来的是对数据日益增长的需求,而由于在医疗保健领域共享数据受到与隐私相关的限制,这就具有了挑战性。最近,合成数据作为一种潜在的解决方案受到了人们的青睐,但在当前纷繁的研究中,很难发现它的潜力。本文提出了一种新颖的医疗保健合成数据分类法,从三个主要方面对合成数据进行分类。数据比例包括数据集中合成数据的不同比例及相关利弊。数据模型指的是可用于合成的不同数据格式以及特定格式所面临的挑战。数据转换涉及利用合成数据改进数据集的特定方面,如数据集的实用性或隐私性。我们的分类法旨在帮助对合成数据感兴趣的医疗保健领域研究人员掌握合成数据可以用于哪些类型的数据集、数据模式和转换,以及各种数据集之间的挑战和重叠之处。
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引用次数: 0
Leveraging Cancer Therapy Peptide Data: A Case Study on Machine Learning Application in Accelerating Cancer Research. 利用癌症治疗肽数据:加速癌症研究的机器学习应用案例研究》。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241068
Georgios Feretzakis, Athanasios Anastasiou, Stavros Pitoglou, Aikaterini Sakagianni, Zoi Rakopoulou, Konstantinos Kalodanis, Vasileios Kaldis, Evgenia Paxinou, Dimitris Kalles, Vassilios S Verykios

This study leverages the DCTPep database, a comprehensive repository of cancer therapy peptides, to explore the application of machine learning in accelerating cancer research. We applied Principal Component Analysis (PCA) and K-means clustering to categorize cancer therapy peptides based on their physicochemical properties. Our analysis identified three distinct clusters, each characterized by unique features such as sequence length, isoelectric point (pI), net charge, and mass. These findings provide valuable insights into the key properties that influence peptide efficacy, offering a foundation for the design of new therapeutic peptides. Future work will focus on experimental validation and the integration of additional data sources to refine the clustering and enhance the predictive power of the model, ultimately contributing to the development of more effective peptide-based cancer treatments.

本研究利用 DCTPep 数据库--癌症治疗多肽的综合资料库--探索机器学习在加速癌症研究中的应用。我们应用主成分分析(PCA)和K-means聚类,根据理化特性对癌症治疗肽进行分类。我们的分析确定了三个不同的聚类,每个聚类都具有独特的特征,如序列长度、等电点(pI)、净电荷和质量。这些发现为了解影响多肽疗效的关键特性提供了宝贵的见解,为设计新的治疗性多肽奠定了基础。未来的工作将侧重于实验验证和整合更多数据源,以完善聚类并增强模型的预测能力,最终为开发更有效的基于多肽的癌症治疗方法做出贡献。
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引用次数: 0
Generative 3D Cardiac Shape Modelling for in-silico Trials. 生成三维心脏形状模型,用于样本内试验。
Pub Date : 2024-11-22 DOI: 10.3233/SHTI241090
Andrei Gasparovici, Alex Serban

We propose a deep learning method to model and generate synthetic aortic shapes based on representing shapes as the zero-level set of a neural signed distance field, conditioned by a family of trainable embedding vectors with encode the geometric features of each shape. The network is trained on a dataset of aortic root meshes reconstructed from CT images by making the neural field vanish on sampled surface points and enforcing its spatial gradient to have unit norm. Empirical results show that our model can represent aortic shapes with high fidelity. Moreover, by sampling from the learned embedding vectors, we can generate novel shapes that resemble real patient anatomies, which can be used for in-silico trials.

我们提出了一种深度学习方法,基于将形状表示为神经符号距离场的零级集,并以编码每个形状几何特征的可训练嵌入向量族为条件,来建模和生成合成主动脉形状。通过使神经场在采样表面点上消失,并强制其空间梯度具有单位法线,在 CT 图像重建的主动脉根网格数据集上对网络进行了训练。经验结果表明,我们的模型能高保真地表示主动脉形状。此外,通过从学习到的嵌入向量中采样,我们还能生成与真实患者解剖结构相似的新形状,可用于体内试验。
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引用次数: 0
期刊
Studies in health technology and informatics
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