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Artificial Intelligence in Cancer Clinical Research: I. Introduction 人工智能在癌症临床研究中的应用:I. 导言
IF 2.4 4区 医学 Q3 Medicine Pub Date : 2024-05-02 DOI: 10.1080/07357907.2024.2347784
Gary H. Lyman, Nicole M. Kuderer
Published in Cancer Investigation (Ahead of Print, 2024)
发表于《癌症调查》(2024 年提前出版)
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引用次数: 0
The Nature, Origin, and Evolution of Life: Part V Bringing It Together: Concepts, Constraints, and Closure. 生命的本质、起源和进化:第五部分:汇集:概念、限制和封闭。
IF 1.8 4区 医学 Q3 ONCOLOGY Pub Date : 2024-05-01 Epub Date: 2024-02-01 DOI: 10.1080/07357907.2024.2309792
Gary H Lyman, Christopher H Lyman, Nicole M Kuderer
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引用次数: 0
Enhancement of Chemotherapy Efficacy in Cervical Cancer via MAPK Pathway Inhibition by Osimertinib. 奥希替尼通过抑制 MAPK 通路提高宫颈癌化疗疗效
IF 2.4 4区 医学 Q3 Medicine Pub Date : 2024-05-01 Epub Date: 2024-05-31 DOI: 10.1080/07357907.2024.2359987
Yue Hu, Chao Hu

Addressing recurrent cervical cancer poses a substantial challenge. Osimertinib, an FDA-approved EGFR inhibitor, has emerged as a promising option. Our study examined its potential to enhance paclitaxel's efficacy against cervical cancer. Osimertinib effectively hindered cancer cell growth and induced apoptosis across multiple cell lines. Combined with paclitaxel, it exhibited synergy in suppressing cervical cancer cells. Importantly, osimertinib's inhibitory effect was EGFR-independent; it targeted Mnk phosphorylation, reducing eIF4E activity. In mice, the combined osimertinib-paclitaxel treatment surpassed individual drugs in inhibiting cancer growth. These preclinical findings suggest osimertinib's repurposing as a means to improve paclitaxel's effectiveness in cervical cancer treatment.

治疗复发性宫颈癌是一项巨大的挑战。Osimertinib是美国食品及药物管理局批准的表皮生长因子受体(EGFR)抑制剂,是一种很有前景的选择。我们的研究考察了奥希替尼增强紫杉醇对宫颈癌疗效的潜力。奥希替尼能有效抑制癌细胞的生长,并诱导多种细胞系的细胞凋亡。奥西美替尼与紫杉醇联用,可在抑制宫颈癌细胞方面发挥协同作用。重要的是,奥希替尼的抑制作用不依赖于表皮生长因子受体;它以 Mnk 磷酸化为靶点,降低了 eIF4E 的活性。在小鼠体内,奥西替尼-紫杉醇联合疗法在抑制癌症生长方面超过了单个药物。这些临床前研究结果表明,osimertinib可以作为提高紫杉醇在宫颈癌治疗中有效性的一种手段。
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引用次数: 0
Research Progress on CARM1 and its Relationship with Colorectal Cancer. CARM1 及其与结直肠癌关系的研究进展。
IF 2.4 4区 医学 Q3 Medicine Pub Date : 2024-05-01 Epub Date: 2024-05-30 DOI: 10.1080/07357907.2024.2354798
Yuchen Wu, Yannan Shen

Coactivator-associated arginine methyltransferase 1 (CARM1) is significant as a key member of the PRMT family, crucial for regulating arginine methylation, and its association with colorectal cancer underscores its potential as a therapeutic target. Consequently, CARM1 inhibitors have emerged as potential therapeutic agents in cancer treatment and valuable chemical tools for cancer research. Despite steady progress in CARM1 inhibitor research, challenges persist in discovering effective, isoform-selective, cell-permeable, and in vivo-active CARM1 inhibitors for colorectal cancer. This review summarizes the research progress on CARM1 and its relationship with colorectal cancer, aiming to provide a theoretical basis for the radiotherapy of colorectal cancer.

共激活因子相关精氨酸甲基转移酶 1(CARM1)是 PRMT 家族的重要成员,对调节精氨酸甲基化至关重要,它与结直肠癌的关联凸显了其作为治疗靶点的潜力。因此,CARM1 抑制剂已成为治疗癌症的潜在药物和癌症研究的重要化学工具。尽管 CARM1 抑制剂的研究取得了稳步进展,但在发现有效、具有同工酶选择性、细胞渗透性和活体活性的结直肠癌 CARM1 抑制剂方面仍存在挑战。本综述总结了 CARM1 及其与结直肠癌关系的研究进展,旨在为结直肠癌的放射治疗提供理论依据。
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引用次数: 0
Chemotherapy Primary Dose Reduction in Older Cancer Patients: A Retrospective Cohort. 老年癌症患者化疗初始剂量的减少:回顾性队列
IF 2.4 4区 医学 Q3 Medicine Pub Date : 2024-05-01 Epub Date: 2024-05-24 DOI: 10.1080/07357907.2024.2357166
Wafa Bouleftour, Fabien Tinquaut, Ludovic Lafaie

Primary dose reduction (PDR) in the first course of chemotherapy is an empirical practice, commonly used in older population. Patients over 70 years old receiving a first course of chemotherapy for a solid tumor were enrolled. A total of 179 patients were included. Standard dose was used in 69.8% of patients, while 30.2% received PDR of chemotherapy. Only 29.6% received a standardized geriatric assessment. Patients receiving standard doses presented 83.2% of toxicities, while 68% of toxicities were reported in patients receiving PDR. The toxicity rate was significantly decreased in patients treated with reduced first-cycle dose of chemotherapy.

在化疗第一疗程中减少初始剂量(PDR)是一种经验性做法,常用于老年人群。研究人员招募了 70 岁以上接受第一疗程化疗的实体瘤患者。共纳入 179 名患者。69.8%的患者使用了标准剂量,30.2%接受了PDR化疗。只有 29.6% 的患者接受了标准化老年病学评估。接受标准剂量化疗的患者出现 83.2% 的毒性反应,而接受 PDR 化疗的患者出现 68% 的毒性反应。减少第一周期化疗剂量的患者的毒性发生率明显降低。
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引用次数: 0
Enrollment Trends Among Patients with Melanoma Brain Metastasis in Active Clinical Trials. 活跃临床试验中黑色素瘤脑转移患者的入组趋势。
IF 2.4 4区 医学 Q3 Medicine Pub Date : 2024-05-01 Epub Date: 2024-05-22 DOI: 10.1080/07357907.2024.2354809
Omar Elghawy, Reema Patel, Jason Xu, Jonathan Sussman, Bethany Horton, Varinder Kaur

The CNS is a common site for distant metastasis and treatment failure in melanoma patients. This study aimed to evaluate the inclusion rate of patients with melanoma brain metastases (MBM) in prospective clinical trials. 69.3% of trials excluded MBM patients based on their CNS disease. In univariate analysis, trials not employing immunotherapy (p = 0.0174), inclusion of leptomeningeal disease (p < 0.0001) and non-pharmaceutical sponsor trials (p = 0.0461) were more likely to enroll patients with MBM. Thoughtful reconsideration of clinical trial designs is needed to give patients with MBMs access to promising investigational agents and improve outcomes for patients with MBM.

中枢神经系统是黑色素瘤患者发生远处转移和治疗失败的常见部位。本研究旨在评估前瞻性临床试验中黑色素瘤脑转移(MBM)患者的纳入率。69.3%的试验以中枢神经系统疾病为由排除了脑转移瘤患者。在单变量分析中,未采用免疫疗法(P = 0.0174)和纳入脑膜疾病(P = 0.0461)的试验更有可能纳入MBM患者。需要对临床试验设计进行深思熟虑的重新考虑,以使MBM患者能够获得有前景的研究药物,并改善MBM患者的预后。
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引用次数: 0
Evaluation of High-Dimensional Data Classification for Skin Malignancy Detection Using DL-Based Techniques. 利用基于 DL 的技术评估用于皮肤恶性肿瘤检测的高维数据分类。
IF 2.4 4区 医学 Q3 Medicine Pub Date : 2024-05-01 Epub Date: 2024-05-20 DOI: 10.1080/07357907.2024.2345184
B Gunasundari, R Thiagarajan

Skin cancer can be detected through visual screening and skin analysis based on the biopsy and pathological state of the human body. The survival rate of cancer patients is low, and millions of people are diagnosed annually. By determining the different comparative analyses, the skin malignancy classification is evaluated. Using the Isomap with the vision transformer, we analyze the high-dimensional images with dimensionality reduction. Skin cancer can present with severe cases and life-threatening symptoms. Overall performance evaluation and classification tend to improve the accuracy of the high-dimensional skin lesion dataset when completed. In deep learning methodologies, the distinct phases of skin malignancy classification are determined by its accuracy, specificity, F1 recall, and sensitivity while implementing the classification methodology. A nonlinear dimensionality reduction technique called Isomap preserves the data's underlying nonlinear relationships intact. This is essential for the categorization of skin malignancies, as the features that separate malignant from benign skin lesions may not be linearly separable. Isomap decreases the data's complexity while maintaining its essential characteristics, making it simpler to analyze and explain the findings. High-dimensional datasets for skin lesions have been evaluated and classified more effectively when evaluated and classified using Isomap with the vision transformer.

皮肤癌可通过肉眼筛查和皮肤分析,根据人体活检和病理状态进行检测。癌症患者的存活率很低,每年有数百万人被确诊。通过确定不同的比较分析,对皮肤恶性肿瘤分类进行评估。通过使用带有视觉变换器的 Isomap,我们对高维图像进行了降维分析。皮肤癌可表现为严重的病例和危及生命的症状。在完成整体性能评估和分类后,高维皮肤病变数据集的准确性趋于提高。在深度学习方法中,皮肤恶性肿瘤分类的不同阶段由其准确性、特异性、F1召回率和灵敏度决定,同时实施分类方法。一种名为 Isomap 的非线性降维技术能完整地保留数据的基本非线性关系。这对皮肤恶性肿瘤的分类至关重要,因为区分恶性和良性皮肤病变的特征可能不是线性可分的。Isomap 在保持数据基本特征的同时降低了数据的复杂性,使分析和解释结果变得更加简单。在使用 Isomap 和视觉转换器对皮肤病变的高维数据集进行评估和分类时,效果更好。
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引用次数: 0
Analytical and Clinical Validation of a Target-Enhanced Whole Genome Sequencing-Based Comprehensive Genomic Profiling Test. 基于目标增强全基因组测序的综合基因组轮廓测试的分析和临床验证。
IF 2.4 4区 医学 Q3 Medicine Pub Date : 2024-05-01 Epub Date: 2024-05-21 DOI: 10.1080/07357907.2024.2352438
Stephanie Ferguson, Shruthi Sriram, Jonathan Kyle Wallace, Jeonghoon Lee, Jung-Ah Kim, Yoonsuh Lee, Brian Baek-Lok Oh, Won Chul Lee, Sangmoon Lee, Erin Connolly-Strong

Evaluation of the test performance of the Target enhanced whole-genome sequencing (TE-WGS) assay for comprehensive oncology genomic profiling. The analytical validation of the assay included sensitivity and specificity for single nucleotide variants (SNVs), insertions/deletions (indels), and structural variants (SVs), revealing a revealed a sensitivity of 99.8% for SNVs and 99.2% for indels. The positive predictive value (PPV) was 99.3% SNVs and 98.7% indels. Clinical validation was benchmarked against established orthogonal methods and demonstrated high concordance with reference methods. TE-WGS provides insights beyond targeted panels by comprehensive analysis of key biomarkers and the entire genome encompassing both germline and somatic findings.

评估目标增强型全基因组测序(TE-WGS)测定在肿瘤基因组综合分析中的测试性能。该检测方法的分析验证包括单核苷酸变异(SNV)、插入/缺失(indels)和结构变异(SV)的灵敏度和特异性,结果显示 SNV 的灵敏度为 99.8%,indels 的灵敏度为 99.2%。SNV的阳性预测值(PPV)为99.3%,indels为98.7%。临床验证以已建立的正交方法为基准,结果显示与参考方法高度一致。TE-WGS 通过全面分析关键生物标记物和全基因组(包括种系和体细胞结果),提供了超越靶向面板的见解。
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引用次数: 0
Evaluation of the Efficacy of Postoperative Adjuvant Therapy for HER2-Positive Ductal Carcinoma in Situ with Microinvasion. 对微小浸润的 HER2 阳性原位乳管癌术后辅助治疗的疗效评估
IF 2.4 4区 医学 Q3 Medicine Pub Date : 2024-05-01 Epub Date: 2024-05-24 DOI: 10.1080/07357907.2024.2355320
Zhihong Xu, Dan Tao, Zhibing Zhou, Qihua Jiang, Wensong Wei

A retrospective study on 90 eligible HER2+ ductal carcinoma in situ with microinvasion (DCIS-MI) patients was performed with a median follow-up time of 57 months. The baseline was consistent between the 4-cycle and 6-cycle chemotherapy groups. There were more patients with multiple foci of micrometastasis in the target therapy group in the two groups with or without target therapy (p < 0.01). Postoperative chemotherapy with a 4-cycle regimen can achieve the expected therapeutic effect in patients with HER2+ DCIS-MI, but the role of target therapy in HER2+ DCIS-MI patients has not been confirmed.

该研究对90名符合条件的HER2+导管原位癌伴微浸润(DCIS-MI)患者进行了回顾性研究,中位随访时间为57个月。4周期化疗组和6周期化疗组的基线一致。在接受或不接受靶向治疗的两组患者中,靶向治疗组中有多个微转移灶的患者更多(p
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引用次数: 0
TTN Mutation in Endometrial Endometrioid Carcinoma Is Associated with Poor Clinical Outcomes and High Tumor Mutation Burden. 子宫内膜样癌中的 TTN 基因突变与临床疗效差和肿瘤突变负担重有关。
IF 2.4 4区 医学 Q3 Medicine Pub Date : 2024-04-26 DOI: 10.1080/07357907.2024.2334249
Lihong Li, Pinli Yue, Jiarun Zhu, Luyuan Li, Kaipeng Wang, Guangwen Yuan, Yan Song
Endometrioid endometrial carcinoma (EEC) stands as a prevalent gynecologic malignancy in developed regions. However, predicting relapse cases remains challenging, necessitating the identification of a novel biomarker for EEC relapse. The assessment of tumor mutational burden (TMB) is pivotal for immunotherapy in EEC patients. However, both whole-exome sequencing (WES) and targeted sequencing encountered application-related difficulties. In light of this, standardized and simplified techniques for TMB measurement are imperative. In this study, we employed WES on 25 EEC patients (12 relapsed cases and 13 non-relapsed cases) who accepted hysterectomy surgery (CHCAMS cohort). We additionally obtained a total of 391 tumor samples with clinicopathological features from TCGA website to broaden the study cohort. In the CHCAMS cohort, the TTN mutant group showed shorter progression-free survival (p < 0.001) and overall survival (p < 0.001) than TTN wild-type group. Additionally, we discovered that the number of TTN mutations per sample was significantly linked with TMB-WES in CHCAMS cohort and TCGA cohort (p < 0.05). And the number of TTN mutations per sample in POLE mutant group was greater than in the POLE wild-type group (p < 0.0001). In conclusion, TTN mutation may serve as a biomarker for EEC prognosis. TTN mutation is also associated with WES-TMB, and could be a simplified TMB measurement technique.
子宫内膜样内膜癌(EEC)是发达地区常见的妇科恶性肿瘤。然而,预测复发病例仍具有挑战性,因此有必要确定一种新的EEC复发生物标志物。肿瘤突变负荷(TMB)的评估对EEC患者的免疫疗法至关重要。然而,全外显子组测序(WES)和靶向测序都遇到了应用方面的困难。有鉴于此,标准化和简化的 TMB 测量技术势在必行。在本研究中,我们对接受子宫切除手术的 25 例 EEC 患者(12 例复发病例和 13 例非复发病例)(CHCAMS 队列)采用了 WES。此外,我们还从 TCGA 网站上获得了 391 份具有临床病理特征的肿瘤样本,以扩大研究队列。在CHCAMS队列中,TTN突变组的无进展生存期(p < 0.001)和总生存期(p < 0.001)均短于TTN野生型组。此外,我们还发现,在CHCAMS队列和TCGA队列中,每个样本的TTN突变数与TMB-WES显著相关(p < 0.05)。而POLE突变组中每个样本的TTN突变数高于POLE野生型组(P<0.0001)。总之,TTN突变可作为EEC预后的生物标志物。TTN突变还与WES-TMB相关,可作为一种简化的TMB测量技术。
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Cancer Investigation
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