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Advances in the discovery and study of Trichoderma natural products for biological control applications 木霉天然产物生物防治研究进展。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-19 DOI: 10.1039/d5np00017c
Sophie Jin , Fabrizio Alberti
Covering: up to 2025
Reducing the prevalence of phytopathogens and their impact on crops is essential to reach sustainable agriculture goals. Synthetic pesticides have been commonly used to control crop disease but are now strongly linked to disease resistance, environmental pollution, depletion of soil biodiversity, and bioaccumulation, leading to adverse effects on human health. As a alternative, the prolific Trichoderma genus has been studied for its biocontrol properties, as well as its ability to promote plant growth and increase nutrient uptake. This is done through various mechanisms, one of which is the production of bioactive natural products with high chemical diversity. These include terpenoids, alkaloids, non-ribosomal peptides, polyketides and RiPPs. One of the most studied examples is 6-pentyl-2H-pyran-2-one, a volatile organic polyketide, which induces systemic acquired resistance, morphogenesis, and natural product biosynthesis in plants. Methods for culturing Trichoderma spp., isolating and characterising unique bioactive metabolites are discussed here, with an emphasis on dereplication strategies using metabolomics to optimise discovery. In addition, the role of genome mining for the study of natural product biosynthesis in Trichoderma, and more generally, filamentous fungi is discussed. Examples of bioinformatics tools available to date are listed here with applications in Trichoderma and other ascomycetes. New advances in genome engineering in Trichoderma are also detailed, providing insights into available strategies for the validation of biosynthetic gene clusters identified using genome mining. Finally, the use of a combination of omics approaches, namely metabologenomics, is presented as a growing field for natural product discovery in fungi.
覆盖:到2025年减少植物病原体的流行及其对作物的影响对于实现可持续农业目标至关重要。合成农药通常用于控制作物病害,但现在与抗病性、环境污染、土壤生物多样性枯竭和生物积累密切相关,从而对人类健康产生不利影响。作为替代,高产木霉属的生物防治特性以及促进植物生长和增加营养吸收的能力已被研究。这是通过多种机制实现的,其中之一是生产具有高度化学多样性的生物活性天然产品。这些包括萜类、生物碱、非核糖体肽、聚酮和RiPPs。研究最多的例子之一是6-戊基- 2h -吡喃-2- 1,这是一种挥发性有机聚酮,在植物中诱导系统获得性抗性,形态发生和天然产物生物合成。本文讨论了木霉的培养方法,分离和表征独特的生物活性代谢物,重点是利用代谢组学优化发现的去复制策略。此外,还讨论了基因组挖掘在木霉和丝状真菌天然产物生物合成研究中的作用。这里列出了迄今为止可用的生物信息学工具的例子,以及在木霉和其他子囊菌中的应用。本文还详细介绍了木霉基因组工程的新进展,为利用基因组挖掘鉴定生物合成基因簇的有效性提供了可行的策略。最后,使用组学方法的组合,即代谢基因组学,被认为是真菌天然产物发现的一个不断增长的领域。
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引用次数: 0
Synthetic biology strategies for cyanobacterial systems to heterologously produce cyanobacterial natural products 合成生物学策略的蓝藻系统异种生产蓝藻天然产物。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-19 DOI: 10.1039/d5np00009b
Manyun Chen , Dipesh Dhakal , Campbell W. Eckhardt , Hendrik Luesch , Yousong Ding
Covering: 2014 to 2024
Cyanobacteria are prolific producers of bioactive natural products, including promising drug leads for FDA-approved cancer therapeutics. Advances in genome sequencing and computational tools have revealed a wealth of cyanobacterial biosynthetic gene clusters (BGCs). However, progress in genome-driven discovery has been hindered by challenges in manipulating native hosts and the limited availability of efficient heterologous expression platforms. This highlight focuses on recent synthetic biology innovations on cyanobacterial systems that address these obstacles, facilitating the production of diverse cyanobacterial natural product families. We discuss key features of widely used cyanobacterial chassis, such as Synechocystis sp. PCC 6803, Synechococcus elongatus UTEX 2973, Anabaena sp. PCC 7120, and emerging hosts. Advances in BGC cloning, combinatorial biosynthesis, transcriptional and translational regulation, and host engineering are also highlighted. Together, these synthetic biology developments provide a powerful framework for expanding cyanobacterial natural product discovery and production.
蓝藻是生物活性天然产品的多产生产商,包括fda批准的癌症治疗药物的有希望的药物先导。基因组测序和计算工具的进步揭示了丰富的蓝藻生物合成基因簇(bgc)。然而,基因组驱动发现的进展一直受到操纵原生宿主的挑战和高效异源表达平台的有限可用性的阻碍。这突出集中在最近的合成生物学创新的蓝藻系统,解决这些障碍,促进生产不同的蓝藻天然产物家族。我们讨论了广泛使用的蓝藻机箱的主要特征,如synechocytis sp. PCC 6803, Synechococcus elongatus UTEX 2973, Anabaena sp. PCC 7120和新兴宿主。重点介绍了BGC克隆、组合生物合成、转录和翻译调控、宿主工程等方面的研究进展。总之,这些合成生物学的发展提供了一个强大的框架,扩大蓝藻天然产品的发现和生产。
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引用次数: 0
Discovery, structure revision, synthesis, and application of all known and even unknown securingine alkaloids 所有已知和未知的安全碱类生物碱的发现、结构修正、合成和应用。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-19 DOI: 10.1039/d5np00025d
Chungwoo Lee , Sunkyu Han
Covering: up to 2025
Natural product-based research encompasses the discovery, structure elucidation, biosynthesis, synthesis, and application of naturally occurring secondary metabolites. Securingine alkaloids, isolated from Flueggea suffruticosa, have emerged as valuable molecular frameworks for exploring various aspects of natural product research due to their distinct chemical structures, characterized by unique oxidation and rearrangement patterns. Herein, we provide a comprehensive account of our journey in developing novel synthetic strategies and tactics for accessing all known and even unknown securingines and investigating the potential application of securingine B as a novel class of natural product-based molecular photoswitches.
涵盖:到2025年,基于天然产物的研究包括天然次生代谢物的发现、结构解析、生物合成、合成和应用。从Flueggea suffruticosa中分离出的安全碱生物碱,由于其独特的化学结构,具有独特的氧化和重排模式,已成为探索天然产物研究各个方面的有价值的分子框架。在此,我们提供了一个全面的说明,我们在开发新的合成策略和战术,以获取所有已知的甚至未知的securingine,并研究securingine B作为一类新的天然产物为基础的分子光开关的潜在应用。
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引用次数: 0
The chemical and biological properties of natural resorcylic acid lactones† 天然间环酸内酯的化学和生物学特性。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-19 DOI: 10.1039/d5np00033e
Ying Gao , Wanpeng Li , Hanli Ruan
Covering: 1953 to Feb 2025
Resorcylic acid lactones (RALs) represent a significant category of polyketides characterized by a β-resorcylate unit embedded in a macrolactone ring. Since the discovery of radicicol in 1953, over 300 natural RALs have been identified, showcasing remarkable structural diversity and a wide range of pharmacological activities, including antitumor, antimalarial, antifungal, and immunomodulatory effects. RALs target multiple molecular pathways, such as heat shock protein 90 (HSP90), WNT-5A, pyruvate dehydrogenase kinase 2 (PDK2), mitogen-activated protein kinase (MAPK), and peroxiredoxin 1 (PRDX1). Despite their promising pharmacological profiles, the clinical development of RALs has progressed at a sluggish pace. This review comprehensively catalogs all natural RALs reported to date, explores their bioactivity mechanisms, and critically assesses preclinical and clinical progress. By addressing gaps in mechanistic understanding and translational research, this work highlights the challenges in drug-like properties and clinical applicability, offering valuable insights for future RAL research.
间苯二甲酸内酯(RALs)是一类重要的聚酮,其特征是嵌入在大内酯环中的β-间苯二甲酸酯单元。自1953年根瘤素被发现以来,已有300多种天然RALs被发现,显示出显著的结构多样性和广泛的药理活性,包括抗肿瘤、抗疟疾、抗真菌和免疫调节作用。RALs靶向多种分子途径,如热休克蛋白90 (HSP90)、WNT-5A、丙酮酸脱氢酶激酶2 (PDK2)、丝裂原活化蛋白激酶(MAPK)和过氧化物还蛋白1 (PRDX1)。尽管RALs具有良好的药理前景,但其临床发展进展缓慢。本综述全面编目了迄今为止报道的所有天然RALs,探讨了它们的生物活性机制,并对临床前和临床进展进行了批判性评估。通过解决机制理解和转化研究方面的差距,这项工作突出了药物样特性和临床适用性方面的挑战,为未来的RAL研究提供了有价值的见解。
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引用次数: 0
Recent highlights of the total synthesis of cyclic peptide natural products 近期重点介绍环肽天然产物的全合成。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-19 DOI: 10.1039/d4np00056k
Takayuki Doi , Masaya Kumashiro , Kosuke Ohsawa
Covering: 2020 to 2022
This review described the total synthesis of naturally occurring cyclic peptides with unique structures covering 2020 to 2022, i.e., darobactin A, pyritide A2, decatransin, mannopeptimycin β, α- and β-amanitins, orfamide A, and MA026, paying particular attention to the construction of their unique structures via macrocyclization.
本文综述了2020 - 2022年天然存在的具有独特结构的环肽的总合成,即darobactin A、pyritide A2、decatransin、mannopeptimycin β、α-和β-amanitins、orfamide A和MA026,重点介绍了它们通过大环化构建独特结构的方法。
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引用次数: 0
Mass spectrometry-based metabolomics approaches to interrogate host-microbiome interactions in mammalian systems. 基于质谱的代谢组学方法在哺乳动物系统中询问宿主-微生物组相互作用。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-16 DOI: 10.1039/d5np00021a
Atharva S Kulkarni, Guilherme M P Carrara, Jiangpeiyun Jin, Jarrod Laro, Thilini Peramuna, Laura-Isobel McCall, Neha Garg

Covering: 2015 to 2025Chemical crosstalk is universal to all life, niche-specific, and essential to thrive. This crosstalk is mediated by a large diversity of molecules, including metal ions, small molecules, polysaccharides, nucleic acids, lipids, and proteins. Among these, specialized small molecules referred to as natural products (NPs) play an important role in microbe-drug/environment interactions, microbe-microbe, and microbe-host interactions. Microbial communication using NPs allows microbes to sense quorum, form biofilms, eliminate competition, establish symbiosis, evade immune attack, and respond to stress. In most cases, the elucidation of small molecule mediators and effectors of microbe-host interactions presents a major challenge due to the relatively low abundance of microbial metabolites in a milieu of host, microbe, and environmental metabolites. Advances in analytical instrumentation, such as mass spectrometers, and both experimental as well as computational methods to analyze data, coupled with the use of model organisms, have enabled fundamental discoveries of mechanisms of small molecule-mediated host-microbe interactions. The focus of this review is to detail the approaches applied in the last decade to disentangle microbiome-derived NPs in human and murine model systems. Select recent findings from diverse biological ecosystems are discussed to inform relevant parallels and potential strategies for research in human health.

涵盖:2015年至2025年化学相声是所有生命普遍存在的,特定于小生境,是茁壮成长的必要条件。这种串扰是由多种分子介导的,包括金属离子、小分子、多糖、核酸、脂质和蛋白质。其中,被称为天然产物(NPs)的特殊小分子在微生物-药物/环境相互作用、微生物-微生物和微生物-宿主相互作用中发挥重要作用。微生物通过NPs进行交流,使微生物能够感知群体,形成生物膜,消除竞争,建立共生关系,逃避免疫攻击,并对压力做出反应。在大多数情况下,由于宿主、微生物和环境代谢物的环境中微生物代谢物的丰度相对较低,阐明微生物-宿主相互作用的小分子介质和效应物提出了一个主要挑战。分析仪器的进步,如质谱仪,以及实验和计算方法来分析数据,再加上模式生物的使用,使得小分子介导的宿主-微生物相互作用机制的基本发现成为可能。本综述的重点是详细介绍在过去十年中应用的方法来解开人类和小鼠模型系统中微生物组衍生的NPs。本文讨论了从不同生物生态系统中选择的最新发现,以告知人类健康研究的相关相似之处和潜在战略。
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引用次数: 0
Hot off the Press 刚出版的。
IF 10.2 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-05 DOI: 10.1039/D5NP90022K
Robert A. Hill and Andrew Sutherland

A personal selection of 32 recent papers is presented covering various aspects of current developments in bioorganic chemistry and novel natural products, such as shimianolide A from Chloranthus holostegius var. shimianensis.

本文介绍了32篇最近发表的论文,涵盖了生物有机化学的各个方面的最新进展和新的天然产物,如从石绵青藻中提取的石绵内酯A。
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引用次数: 0
Dietary substances and their glucuronides: structures, occurrence and biological activity 膳食物质及其葡糖苷:结构、分布和生物活性。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-04 DOI: 10.1039/D5NP00002E
Andrew V. Stachulski, Edwin A. Yates, Aleksandra Teriosina, Lesley Hoyles and Simon McArthur

Covering up to 2025.

Plant-derived polyphenols of various chemical classes are widely distributed in dietary substances, e.g. fruits, nuts, vegetables and teas. Such phenolic derivatives are natural antioxidants and have been linked with numerous health benefits, notably anti-cancer and anti-inflammatory properties. Additionally, they may behave as mild estrogens, as in the case of genistein. However, there has often been no clear correlation between in vitro properties, as measured in cell lines for instance, and in vivo performance. Moreover, it is not always clear what the true active species might be, as most phenols are readily subject to phase II metabolism, generating predominantly glucuronides and sulfates. In this highlight, we seek to address the question of whether dietary substance metabolites, especially glucuronides, which have been more widely studied, do indeed possess distinct activities in their own right compared to their parent substances. In most cases this will refer to enzyme inhibition and/or interaction with cell lines. General observations concerning glucuronidation are provided, accompanied by practical comments concerning the synthesis of glucuronides, which are not always available or marketed in useful quantities. The main structural classes of natural polyphenols are introduced, with comments including synthetic details and biological properties for important members of each class.

覆盖到2025年。各种化学类别的植物源性多酚广泛分布于膳食物质中,例如水果、坚果、蔬菜和茶。这些酚类衍生物是天然的抗氧化剂,具有许多健康益处,尤其是抗癌和抗炎特性。此外,它们可能表现为温和的雌激素,就像染料木素一样。然而,通常在体外特性(例如在细胞系中测量)与体内性能之间没有明确的相关性。此外,真正的活性物质可能是什么并不总是很清楚,因为大多数酚很容易受到第二阶段代谢的影响,主要产生葡萄糖醛酸盐和硫酸盐。在这篇重点文章中,我们试图解决膳食物质代谢物,特别是葡萄糖醛酸盐,已经被广泛研究的问题,是否确实具有与其母体物质相比的独特活性。在大多数情况下,这将涉及酶抑制和/或与细胞系的相互作用。提供了关于葡萄糖醛酸化的一般观察结果,并附有关于葡萄糖醛酸酯合成的实际评论,葡萄糖醛酸酯并不总是可用或销售的有用数量。介绍了天然多酚的主要结构类别,并对每一类重要成员的合成细节和生物学特性进行了评述。
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引用次数: 0
Unpacking policy developments in marine natural product research: a scientist's guide to DSI and BBNJ 海洋天然产品研究的政策发展:DSI和BBNJ的科学家指南。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-17 DOI: 10.1039/d4np00070f
Federica Casolari , Amelia Westmoreland , Thomas Vanagt , Marcel Jaspars
Covering: 2014 up to February 2025
Since the Nagoya Protocol came into force in 2014, scientists working with genetic resources have integrated compliance with Access and Benefit-Sharing (ABS) legislation at international and national levels into their research practices. However, two key gaps left by the Nagoya Protocol are being addressed, introducing new obligations for marine natural product scientists: under the auspices of the Convention on Biological Diversity (CBD), a compromise agreement was reached in November 2024 that regulates the use of Digital Sequence Information (DSI) on Genetic Resources. Within the next few years, the 2023 Biodiversity Beyond National Jurisdiction (BBNJ) Agreement is expected to take effect. This treaty covers the access to and use of marine biodiversity of areas beyond national jurisdiction for research and development. In a time when genetic research and marine biodiversity are key to scientific advancement, these evolving policies affect how genetic information is stored, shared, and used, raising emerging questions for the scientific community about their direct impact and the complexities of compliance. Despite continuous developments and scientific community involvement, there remains a notable gap in communication between policy changes and their accessible dissemination to researchers. Addressing this gap is crucial for the continuation of research and the effective use of relevant resources. The main goal of this viewpoint article is to provide a concise guide to recent policy developments relevant to natural product researchers that should be incorporated and harmonized into ongoing scientific activities.
自2014年《名古屋议定书》生效以来,从事遗传资源工作的科学家已将遵守国际和国家层面的获取和惠益分享立法纳入其研究实践。然而,《名古屋议定书》留下的两个关键空白正在得到解决,为海洋天然产品科学家引入了新的义务:在《生物多样性公约》(CBD)的主持下,于2024年11月达成了一项妥协协议,规范了遗传资源数字序列信息(DSI)的使用。预计在未来几年内,《2023年国家管辖范围外生物多样性协定》将生效。该条约涵盖了为研究和发展而获取和利用国家管辖范围以外地区的海洋生物多样性。在遗传研究和海洋生物多样性是科学进步的关键之时,这些不断演变的政策影响着遗传信息的存储、共享和使用方式,为科学界提出了有关其直接影响和合规复杂性的新问题。尽管不断发展和科学界的参与,在政策变化和向研究人员传播政策变化之间的沟通仍然存在显著的差距。解决这一差距对于继续进行研究和有效利用有关资源至关重要。这篇观点文章的主要目的是为与天然产物研究人员有关的近期政策发展提供一个简明的指南,这些政策发展应该被纳入和协调到正在进行的科学活动中。
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引用次数: 0
Intramolecular cycloaddition of nitrones in total synthesis of natural products 天然产物全合成中氮酮的分子内环加成。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-17 DOI: 10.1039/d4np00062e
Satoshi Yokoshima
Covering 2015 to 2024
Cycloaddition of nitrones with alkenes forms isoxazolidines, which are five-membered heterocycles containing nitrogen and oxygen atoms. This transformation functionalizes alkenes by forming C–C and C–O bonds. The N–O bond in the resultant isoxazolidines is easily cleaved. Additionally, when the cycloaddition is carried out intramolecularly, the regioselectivity of the reaction is influenced by the tether connecting the nitrone and alkene and can differ from the selectivity governed by frontier molecular orbital interaction. These features make the intramolecular cycloaddition of nitrones attractive in the synthesis of complex molecules. In this review, we discuss the intramolecular cycloaddition of nitrones used in the total synthesis of natural products.
从2015年到2024年,氮酮与烯烃的环加成形成异恶唑烷,这是一种含有氮和氧原子的五元杂环。这种转化通过形成C-C键和C-O键使烯烃功能化。合成的异恶唑烷中的N-O键很容易断裂。此外,当环加成在分子内进行时,反应的区域选择性受到连接硝基酮和烯烃的系链的影响,可能不同于由前沿分子轨道相互作用控制的选择性。这些特征使得分子内硝基环加成在复杂分子的合成中具有吸引力。本文综述了天然产物全合成中的分子内环加成反应。
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引用次数: 0
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Natural Product Reports
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