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Curiouser and curiouser: progress in understanding the programming of iterative highly-reducing polyketide synthases Curiouser和Curiouser:理解迭代高还原聚酮合酶编程的进展
IF 11.9 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-01-01 DOI: 10.1039/d2np00007e
Russell J. Cox

Covering: 1996–2022

Investigations over the last 2 decades have begun to reveal how fungal iterative highly-reducing polyketide synthases are programmed. Both in vitro and in vivo experiments have revealed the interplay of intrinsic and extrinsic selectivity of the component catalytic domains of these systems. Structural biology has begun to provide high resolution structures of hr-PKS that can be used as the basis for their engineering and reprogramming, but progress to-date remains rudimentary. However, significant opportunities exist for translating the current level of understanding into the ability to rationally re-engineer these highly efficient systems for the production of important biologically active compounds through biotechnology.

覆盖范围:1996-2022过去20年的研究已经开始揭示真菌迭代高还原聚酮合成酶是如何编程的。体外和体内实验都揭示了这些系统的组分催化结构域的内在和外在选择性的相互作用。结构生物学已经开始提供hr-PKS的高分辨率结构,这些结构可以作为其工程和重编程的基础,但迄今为止的进展仍处于初级阶段。然而,将目前的理解水平转化为合理地重新设计这些高效系统的能力,以通过生物技术生产重要的生物活性化合物,存在着重大的机会。
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引用次数: 9
Revisiting the manzamine biosynthetic hypothesis 对曼扎明生物合成假说的再认识
IF 11.9 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-01-01 DOI: 10.1039/d2np00082b
Alexander T. Piwko , Brian G. Miller , Joel M. Smith

Covering: up to 2023

The marine environment represents a rich yet challenging source of novel therapeutics. These challenges are best exemplified by the manzamine class of alkaloids, featuring potent bioactivities, difficult procurement, and a biosynthetic pathway that has eluded characterization for over three decades. This review highlights postulated biogenic pathways toward the manzamines, evaluated in terms of current biosynthetic knowledge and metabolic precedent.

涵盖范围:截至2023年,海洋环境是一个丰富但富有挑战性的新型疗法来源。曼扎明类生物碱最能说明这些挑战,其具有强大的生物活性、难以获得以及三十多年来一直无法表征的生物合成途径。这篇综述重点介绍了根据当前生物合成知识和代谢先例评估的曼扎明类的假定生物成因途径。
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引用次数: 0
Labelling studies in the biosynthesis of polyketides and non-ribosomal peptides 聚酮和非核糖体肽生物合成的标记研究
IF 11.9 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-01-01 DOI: 10.1039/d2np00071g
Anwei Hou , Jeroen S. Dickschat

Covering: 2015 to 2022

In this review, we discuss the recent advances in the use of isotopically labelled compounds to investigate the biosynthesis of polyketides, non-ribosomally synthesised peptides, and their hybrids. Also, we highlight the use of isotopes in the elucidation of their structures and investigation of enzyme mechanisms. The biosynthetic pathways of selected examples are presented in detail to reveal the principles of the discussed labelling experiments. The presented examples demonstrate that the application of isotopically labelled compounds is still the state of the art and can provide valuable information for the biosynthesis of natural products.

涵盖:2015年至2022年在这篇综述中,我们讨论了使用同位素标记化合物研究聚酮、非核糖体合成肽及其杂交体生物合成的最新进展。此外,我们还强调了同位素在阐明其结构和研究酶机制方面的应用。详细介绍了所选实例的生物合成途径,以揭示所讨论的标记实验的原理。所提供的实例表明同位素标记化合物的应用仍然是现有技术的状态,并且可以为天然产物的生物合成提供有价值的信息。
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引用次数: 0
Plant glycosyltransferases for expanding bioactive glycoside diversity 植物糖苷基转移酶用于扩大生物活性糖苷的多样性
IF 11.9 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-01-01 DOI: 10.1039/d2np00077f
Sasilada Sirirungruang , Collin R. Barnum , Sophia N. Tang , Patrick M. Shih

Glycosylation is a successful strategy to alter the pharmacological properties of small molecules, and it has emerged as a unique approach to expand the chemical space of natural products that can be explored in drug discovery. Traditionally, most glycosylation events have been carried out chemically, often requiring many protection and deprotection steps to achieve a target molecule. Enzymatic glycosylation by glycosyltransferases could provide an alternative strategy for producing new glycosides. In particular, the glycosyltransferase family has greatly expanded in plants, representing a rich enzymatic resource to mine and expand the diversity of glycosides with novel bioactive properties. This article highlights previous and prospective uses for plant glycosyltransferases in generating bioactive glycosides and altering their pharmacological properties.

糖基化是改变小分子药理学性质的一种成功策略,它已成为扩大天然产物化学空间的一种独特方法,可在药物发现中进行探索。传统上,大多数糖基化反应都是化学进行的,通常需要许多保护和脱保护步骤才能获得目标分子。糖基转移酶的酶促糖基化可以为生产新的糖苷提供一种替代策略。特别是,糖基转移酶家族在植物中得到了极大的扩展,为挖掘和扩大具有新生物活性的糖苷的多样性提供了丰富的酶资源。这篇文章强调了植物糖基转移酶在产生生物活性糖苷和改变其药理特性方面的先前和未来用途。
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引用次数: 2
Discovery and development of botanical natural products and their analogues as therapeutics for ovarian cancer 植物天然产物及其类似物治疗卵巢癌症的发现与开发
IF 11.9 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-01-01 DOI: 10.1039/d2np00091a
Brittney K. Mize , Amrita Salvi , Yulin Ren , Joanna E. Burdette , James R. Fuchs

Covering: 2015 through the end of July 2022

Ovarian cancer is one of the most common cancers affecting the female reproductive organs and has the highest mortality rate among gynecological cancers. Although botanical drugs and their derivatives, namely members of the taxane and camptothecin families, represent significant therapeutics currently available for the treatment of ovarian cancer, new drugs that have alternative mechanisms of action are still needed to combat the disease. For this reason, many efforts to identify additional novel compounds from botanical sources, along with the further development of existing therapeutics, have continued to appear in the literature. This review is designed to serve as a comprehensive look at both the currently available small-molecule therapeutic options and the recently reported botanically-derived natural products currently being studied and developed as potential future therapeutics that could one day be used against ovarian cancer. Specifically, key properties, structural features, and biological data are highlighted that are important for the successful development of potential agents. Recently reported examples are specifically discussed in the context of “drug discovery attributes,” including the presence of structure–activity relationship, mechanism of action, toxicity, and pharmacokinetic studies, to help indicate the potential for future development and to highlight where these compounds currently exist in the development process. The lessons learned from both the successful development of the taxanes and camptothecins, as well as the strategies currently being employed for new drug development, are expected to ultimately help guide the future development of botanical natural products for ovarian cancer.

涵盖范围:2015年至2020年7月底。癌症是影响女性生殖器官的最常见癌症之一,在妇科癌症中死亡率最高。尽管植物药物及其衍生物,即紫杉烷和喜树碱家族的成员,代表了目前可用于治疗卵巢癌症的重要疗法,但仍需要具有替代作用机制的新药来对抗这种疾病。因此,随着现有治疗方法的进一步发展,许多从植物来源鉴定额外新化合物的努力不断出现在文献中。这篇综述旨在全面审视目前可用的小分子治疗方案和最近报道的植物衍生天然产品,这些产品目前正在研究和开发,作为未来可能用于治疗癌症的潜在疗法。具体而言,重点介绍了对成功开发潜在制剂至关重要的关键特性、结构特征和生物学数据。最近报道的例子在“药物发现属性”的背景下进行了具体讨论,包括结构-活性关系的存在、作用机制、毒性和药代动力学研究,以帮助表明未来开发的潜力,并强调这些化合物目前在开发过程中的存在位置。从紫杉烷和喜树碱的成功开发中吸取的经验教训,以及目前用于新药开发的策略,有望最终有助于指导癌症植物天然产品的未来开发。
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引用次数: 1
Production of high molecular-ordered stilbene oligomers for the study of their biological activity: total synthesis, bio-catalyzed synthesis and production by plant systems† 生产用于研究其生物活性的高分子有序二苯乙烯低聚物:全合成、生物催化合成和植物系统生产†
IF 11.9 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-01-01 DOI: 10.1039/d2np00073c
Philippe Jeandet , Md. Sahab Uddin , Christophe Clément , Aziz Aziz , Cédric Jacquard , Haroon Khan , Muhammad Ajmal Shah , Essaid Ait Barka , Mattheos Koffas , Seyed Mohammad Nabavi , Eduardo Sobarzo-Sánchez , Jean-Hugues Renault

Though the iconic stilbene resveratrol and its related dimers constitute a top storyline in the field of natural product research, resveratrol oligomers (condensation >2) have been left aside despite their higher biological activity compared to that of the monomers. This situation largely results from the difficulty of getting them in sufficient quantities to enable evaluation of their biological properties in vivo. We present here a synthetic and critical analysis of the methods used for the production of high molecular-ordered stilbene oligomers of potential biomedical interest, gathering the most salient data regarding the approaches employed to prepare them by total synthesis, use of biomimetic approaches or through plant systems.

尽管标志性的二苯乙烯-白藜芦醇及其相关二聚体构成了天然产物研究领域的顶级故事情节,但白藜芦醇低聚物(缩合物>;2)尽管与单体相比具有更高的生物活性,但仍被搁置一旁。这种情况在很大程度上是由于难以获得足够数量的它们来评估其体内生物特性。我们在这里对用于生产具有潜在生物医学意义的高分子有序二苯乙烯低聚物的方法进行了合成和批判性分析,收集了关于通过全合成、使用仿生方法或通过植物系统制备它们的方法的最显著数据。
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引用次数: 5
Streptomyces cell-free systems for natural product discovery and engineering 用于天然产物发现和工程的链霉菌无细胞系统
IF 11.9 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-01-01 DOI: 10.1039/d2np00057a
Simon J. Moore , Hung-En Lai , Jian Li , Paul S. Freemont

Streptomyces bacteria are a major microbial source of natural products, which are encoded within so-called biosynthetic gene clusters (BGCs). This highlight discusses the emergence of native Streptomyces cell-free systems as a new tool to accelerate the study of the fundamental chemistry and biology of natural product biosynthesis from these bacteria. Cell-free systems provide a prototyping platform to study plug-and-play reactions in microscale reactions. So far, Streptomyces cell-free systems have been used to rapidly characterise gene expression regulation, access secondary metabolite biosynthetic enzymes, and catalyse cell-free transcription, translation, and biosynthesis of example natural products. With further progress, we anticipate the development of more complex systems to complement existing experimental tools for the discovery and engineering of natural product biosynthesis from Streptomyces and related high G + C (%) bacteria.

链霉菌是天然产物的主要微生物来源,这些产物编码在所谓的生物合成基因簇(BGCs)中。本节重点讨论了天然链霉菌无细胞系统的出现,它是一种新的工具,可以加速研究这些细菌天然产物生物合成的基础化学和生物学。无细胞系统提供了一个原型平台来研究微尺度反应中的即插即用反应。到目前为止,链霉菌无细胞系统已被用于快速表征基因表达调控,获得次级代谢产物生物合成酶,并催化示例天然产物的无细胞转录、翻译和生物合成。随着进一步的进展,我们预计将开发更复杂的系统,以补充现有的实验工具,从链霉菌和相关的高G+C(%)细菌中发现和工程化天然产物生物合成。
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引用次数: 5
Discovery, bioactivity and biosynthesis of fungal piperazines 真菌哌嗪类化合物的发现、生物活性及生物合成
IF 11.9 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-01-01 DOI: 10.1039/d2np00070a
Rui Wang , Andrew M. Piggott , Yit-Heng Chooi , Hang Li

Covering: up to the end of July, 2022

Fungi are prolific producers of piperazine alkaloids, which have been shown to exhibit an array of remarkable biological activities. Since the first fungal piperazine, herquline A, was reported from Penicillium herquei Fg-372 in 1979, a plethora of structurally diverse piperazines have been isolated and characterised from various fungal strains. Significant advancements have been made in recent years towards unravelling the biosynthesis of fungal piperazines and numerous synthetic routes have been proposed. This review provides a comprehensive summary of the current knowledge of the discovery, classification, bioactivity and biosynthesis of piperazine alkaloids reported from fungi, and discusses the perspectives for exploring the structural diversity of fungal piperazines via genome mining of the untapped piperazine biosynthetic pathways.

报道:截至2022年7月底,丰吉是哌嗪生物碱的多产生产商,这些生物碱已被证明具有一系列显著的生物活性。自1979年从青霉菌(Penicillium herquei Fg-372)中报道第一种真菌哌嗪(herquline A)以来,已经从各种真菌菌株中分离并鉴定了大量结构多样的哌嗪。近年来,在解开真菌哌嗪的生物合成方面取得了重大进展,并提出了许多合成路线。这篇综述全面总结了真菌中哌嗪生物碱的发现、分类、生物活性和生物合成的最新知识,并讨论了通过基因组挖掘尚未开发的哌嗪生物合成途径来探索真菌哌嗪结构多样性的前景。
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引用次数: 0
From plant to cancer drug: lessons learned from the discovery of taxol 从植物到癌症药物:紫杉醇发现的经验教训
IF 11.9 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-01-01 DOI: 10.1039/d3np00017f
Nadja B. Cech , Nicholas H. Oberlies

Many researchers in the natural product sciences dream of discovering a successful drug. For almost all of us, this dream will never be realized. Among the heroes of our past, though, there is a team whose efforts led to the discovery of not one but two new drugs. Dr Monroe Wall and Dr Mansukh Wani isolated and solved the structures for taxol and camptothecin, plant-based compounds that continue to play a critical role in cancer therapy today. Since the 1960s and 1970s when Wall, Wani and collaborators did their seminal work, there have been tremendous technological advances in the natural product sciences. With access to most sophisticated technology, it might be expected that the rate of discovery of new drugs from plants and other sources would have sped up. However, this has not come to pass. Why is this? Is it that the promise of new drug candidates from plant-based sources has been exhausted? Has our fascination with new technologies and with the promise of the genomics revolution caused us to stop investing effort and resources in the practices that are proven to yield success? With this Viewpoint, we share the story of taxol's discovery, highlighting critical challenges that were overcome and considering their relevance to botanical natural products drug discovery today. We hope that consideration of lessons learned from the past will help fuel success by researchers currently studying plants with the goal of discovering promising therapeutic leads.

自然产品科学领域的许多研究人员梦想着发现一种成功的药物。对我们几乎所有人来说,这个梦想永远不会实现。然而,在我们过去的英雄中,有一个团队的努力发现了两种新药,而不是一种。Monroe Wall博士和Mansukh Wani博士分离并解决了紫杉醇和喜树碱的结构,这两种植物化合物至今仍在癌症治疗中发挥着关键作用。自20世纪60年代和70年代Wall、Wani及其合作者进行了开创性的工作以来,自然产品科学取得了巨大的技术进步。随着获得最先进的技术,从植物和其他来源发现新药的速度可能会加快。然而,这并没有实现。为什么会这样?植物来源的候选新药的前景是否已经破灭?我们对新技术和基因组学革命的承诺的迷恋是否导致我们停止在被证明会取得成功的实践中投入精力和资源?通过这一观点,我们分享了紫杉醇的发现故事,强调了所克服的关键挑战,并考虑到它们与当今植物天然产物药物发现的相关性。我们希望,对过去经验教训的思考将有助于推动目前研究植物的研究人员取得成功,目的是发现有前景的治疗线索。
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引用次数: 1
Natural products from plants targeting key enzymes for the future development of antidiabetic agents 植物天然产物靶向未来开发抗糖尿病药物的关键酶
IF 11.9 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-01-01 DOI: 10.1039/d3np00007a
R. Mata , L. Flores-Bocanegra , B. Ovalle-Magallanes , M. Figueroa

Covering: 2000 to January 2023

Diabetes is a metabolic disease of serious concern nowadays, with a negative economic impact. In 2021, the International Diabetes Federation estimated that more than 537 million adults live with diabetes, causing over 6.7 million deaths in that year. Intensive scientific research on medicinal plants in the last 100 years reveals that herbal drugs have been an essential source of products for developing antidiabetic agents acting on different physiological targets. This review summarizes recent research from 2000 to 2022 on plant natural compounds affecting selected crucial enzymes (dipeptidyl peptidase IV, diacylglycerol acyltransferase, fructose 1,6-biphosphatase, glucokinase, and fructokinase) involved in glucose homeostasis. Enzyme-aimed treatments usually induce reversible inhibition, irreversible by covalent changes of the objective enzymes, or bind non-covalently but so tightly that their inhibition is irreversible. Depending on the binding site, these inhibitors could be orthosteric or allosteric; in any case, the desired pharmacological action is achieved. One crucial advantage of targeting enzymes in drug discovery is that the required assays are usually simple, using biochemical experiments capable of analyzing enzyme activity.

涵盖范围:2000年至2023年1月糖尿病是当今备受关注的代谢性疾病,具有负面的经济影响。2021年,国际糖尿病联合会估计,超过5.37亿成年人患有糖尿病,当年导致670多万人死亡。在过去的100年里,对药用植物的深入科学研究表明,草药一直是开发针对不同生理靶标的抗糖尿病药物的重要产品来源。这篇综述总结了2000年至2022年关于植物天然化合物影响参与葡萄糖稳态的选定关键酶(二肽基肽酶IV、二酰基甘油酰基转移酶、果糖1,6-二磷酸酶、葡萄糖激酶和果糖激酶)的最新研究。以酶为目标的处理通常诱导可逆的抑制,通过目标酶的共价变化而不可逆,或者非共价但紧密结合,使其抑制不可逆。根据结合位点的不同,这些抑制剂可以是正构的或变构的;在任何情况下,都实现了所需的药理学作用。靶向酶在药物发现中的一个关键优势是,所需的测定通常很简单,使用能够分析酶活性的生化实验。
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引用次数: 0
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