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Hot off the Press 刚出版的。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-01 DOI: 10.1039/d5np90038g
Robert A. Hill , Andrew Sutherland
A personal selection of 32 recent papers is presented covering various aspects of current developments in bioorganic chemistry and novel natural products such as aragezolone from Auricularia cornea.
个人选择了32篇最近的论文,涵盖了生物有机化学和新型天然产物(如黑木耳中的aragezolone)的各个方面的最新发展。
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引用次数: 0
Photo-/electro-chemical catalysis: a promising toolkit for late-stage functionalization of alkene-containing natural products† 光/电化学催化:含烯烃天然产物后期功能化的有前途的工具。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-01 DOI: 10.1039/d5np00030k
Ji-Wei Sang , Yu Zhang , Zhimin Hu , Jinxin Wang , Wei-Dong Zhang
Covering: 2013 to 2024
Alkene-containing natural products (NPs) are abundantly present in plants, animals, and microorganisms. Strategic alkene modification of NPs not only generates diverse chemical libraries, enriching scaffold, stereochemistry and appendage variations but also aids in unraveling the intricate mechanisms and cellular targets of NPs. Over the past 15 years, visible-light photocatalysis and electrochemical catalysis have emerged as two highly promising approaches for novel chemical transformations. It is worth emphasizing that these radical-mediated strategies have indeed altered the conventional transformation patterns of alkenes. These electronic or energy supply methods reduce dependence on stringent reaction conditions, showcasing more green and efficient characteristics. Over the years, numerous articles have been published, providing concise summaries of remarkable advancements in the fields of photo-organic synthesis, electro-organic synthesis, and late-stage functionalization (LSF). These contributions have predominantly centered on mechanistic explorations of chemical reactivity, with comparatively less emphasis on leveraging these transformations for the LSF of NPs to probe their biological functions. This review is organized according to the reaction types of alkenes, and we aim to elucidate the pathways for the LSF of NPs, exploring their synthetic potential and delineating the limitations of specific reaction classes. Through this overview, we expect that function-oriented synthetic methodologies will drive future research directions, facilitating mutual feedback and collaboration between synthetic chemistry, medicinal chemistry and chemical biology.
含烯烃天然产物(NPs)大量存在于植物、动物和微生物中。NPs的战略性烯烃修饰不仅产生了丰富的化学文库,丰富了支架、立体化学和附属物的变化,而且有助于揭示NPs的复杂机制和细胞靶点。在过去的15年中,可见光催化和电化学催化已经成为两种非常有前途的新型化学转化方法。值得强调的是,这些自由基介导的策略确实改变了烯烃的传统转化模式。这些电子或能源供应方法减少了对严格反应条件的依赖,显示出更绿色高效的特点。多年来,已经发表了许多文章,简要总结了光有机合成、电有机合成和后期功能化(LSF)领域的显著进展。这些贡献主要集中在化学反应性的机制探索上,相对较少强调利用NPs的LSF的这些转化来探索其生物学功能。本文根据烯烃的反应类型进行综述,旨在阐明NPs的LSF途径,探索其合成潜力,并描述特定反应类别的局限性。通过这一综述,我们期望功能导向的合成方法将推动未来的研究方向,促进合成化学、药物化学和化学生物学之间的相互反馈和协作。
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引用次数: 0
Progress on targeted discovery of microbial natural products based on the predictions of both structure and activity 基于结构和活性预测的微生物天然产物定向发现研究进展。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-01 DOI: 10.1039/d5np00008d
Yuwei Zhang , Jianfa Zong , Yufeng Liu , Keyu Zhou , Haibo Shi , Wen-Bing Yin , Ling Liu , Yihua Chen
Covering: up to 2025
Microbial natural products (NPs) with diverse structures and fascinating activities are a fertile source of drug discovery. Genomic and metagenomic data have revealed that there are abundant valuable resources to be explored. With the advancement in technology, methods for discovering NPs from microorganisms are undergoing notable changes. In this highlight article, we summarized different NP discovery methods into activity-guided and structure-guided categories, emphasizing the characteristics of target compounds and providing typical examples of NPs. We primarily focused on recently developed representative methods that can simultaneously predict the structure and activity features of target compounds as well as the discovery trends of NPs reflected by these cutting-edge methods.
微生物天然产物(NPs)具有多种结构和迷人的活性,是药物发现的丰富来源。基因组学和宏基因组学数据显示,有大量有价值的资源有待开发。随着技术的进步,从微生物中发现NPs的方法正在发生显著的变化。在这篇重点文章中,我们将不同的NP发现方法分为活性导向和结构导向两类,强调了目标化合物的特点,并提供了典型的NP发现例子。我们主要关注最近发展的具有代表性的方法,可以同时预测目标化合物的结构和活性特征,以及这些前沿方法所反映的NPs的发现趋势。
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引用次数: 0
Recent progress of [5 + 2] cycloaddition reactions in natural product synthesis 天然产物合成中[5 + 2]环加成反应的研究进展。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-28 DOI: 10.1039/D5NP00023H
Nan Wang, Yu Bai, Qingyi Zeng, Tao Zhang and Jun Deng

Covering: 2013 to 2024

Cycloaddition reactions, which efficiently construct polycyclic ring systems and stereocenters, are powerful tools in the total synthesis of natural products. Given the significant progress and numerous elegant applications of [5 + 2] cycloaddition reactions over the past decade, this review systematically summarizes the advances in three major types of [5 + 2] cycloaddition reactions in natural product synthesis from 2013 to 2024. The advantages of [5 + 2] cycloadditions in constructing complex natural product frameworks are illustrated through comparisons with alternative strategies for the same targets. Additionally, trends and future prospects for [5 + 2] cycloadditions are discussed, offering valuable insights for further research and broader applications.

环加成反应可以有效地构建多环体系和立体中心,是天然产物全合成的有力工具。鉴于[5 + 2]环加成反应在过去十年中取得的重大进展和许多优秀的应用,本文系统地总结了2013年至2024年天然产物合成中三种主要的[5 + 2]环加成反应的进展。[5 + 2]环添加在构建复杂天然产物框架中的优势通过与相同目标的替代策略的比较来说明。此外,还讨论了[5 + 2]环加成的趋势和未来前景,为进一步研究和更广泛的应用提供了有价值的见解。
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引用次数: 0
Toward a unified pipeline for natural product discovery: tools and strategies for NRPS and PKS pathway exploration and engineering. 迈向天然产物发现的统一管道:NRPS和PKS途径探索和工程的工具和策略。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-28 DOI: 10.1039/d5np00041f
Biyan Chen, Emre F Bülbül, SeoungGun Bang, Hannah A Minas, Kenan A J Bozhüyük

Covering: up to 2025.Non-ribosomal peptide synthetases and polyketide synthases are modular biosynthetic systems that produce structurally diverse and pharmacologically potent natural products, including antibiotics, immunosuppressants, and anticancer agents. Their programmable architecture has long inspired efforts in biosynthetic re-engineering. This review highlights recent advances that are transforming non-ribosomal peptide synthetase and polyketide synthase systems into versatile platforms for rational design. We discuss progress in genome mining, high-throughput screening, and dereplication, alongside emerging tools from synthetic biology and computational modeling. Particular focus is given to structure-based approaches-such as homology modeling, molecular docking, and molecular dynamics simulations-as well as deep learning strategies for enzyme prediction and design. Rather than replacing classical techniques, these computational methods now complement and extend them, enabling accelerating the discovery and assembly of tailor-made natural product analogs.

覆盖范围:至2025年。非核糖体肽合成酶和聚酮合成酶是模块化的生物合成系统,可产生结构多样、药理有效的天然产物,包括抗生素、免疫抑制剂和抗癌药物。它们的可编程结构长期以来一直激励着生物合成再工程的努力。这篇综述强调了将非核糖体肽合成酶和聚酮合成酶系统转化为合理设计的多功能平台的最新进展。我们讨论了基因组挖掘、高通量筛选和反复制的进展,以及合成生物学和计算建模的新兴工具。特别关注基于结构的方法-如同源建模,分子对接和分子动力学模拟-以及酶预测和设计的深度学习策略。这些计算方法并没有取代传统技术,而是对传统技术进行了补充和扩展,从而加速了定制天然产物类似物的发现和组装。
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引用次数: 0
The development of Burkholderia bacteria as heterologous hosts. 伯克氏菌作为异源寄主的发展。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-28 DOI: 10.1039/d5np00024f
Stephanie C Heard, Alessandra S Eustáquio

Covering up to 2024Drug resistance is a serious and growing problem, and new small molecules are needed for a wide variety of clinical and agricultural applications. Natural products, encoded by biosynthetic gene clusters, have consistently been a source of chemical diversity for finely tuned interactions with a range of molecular targets of interest. However, many gene clusters are not transcriptionally active, making heterologous expression in a different host strain a useful tool to access bioactive small molecules. Burkholderia spp. bacteria hold promise as heterologous hosts because of their intrinsic natural product capabilities. In this review, we summarize natural products successfully isolated from Burkholderia spp. heterologous hosts up until 2024. We then compare the hosts that have been tested and discuss ongoing development efforts to improve access to new natural products in titers sufficient for drug development and industrial applications.

耐药性是一个严重且日益严重的问题,各种临床和农业应用都需要新的小分子。由生物合成基因簇编码的天然产物一直是与一系列感兴趣的分子靶标精细调节相互作用的化学多样性的来源。然而,许多基因簇不具有转录活性,这使得在不同宿主菌株中的异源表达成为获得生物活性小分子的有用工具。伯克霍尔德氏菌因其固有的天然产物能力而有望成为异源宿主。本文综述了截至2024年从伯克霍尔德氏菌异源寄主中成功分离的天然产物。然后,我们比较了已测试的宿主,并讨论了正在进行的开发工作,以改善获得新的天然产品的滴度,足以用于药物开发和工业应用。
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引用次数: 0
Spiroketal natural products isolated from traditional Chinese medicine: isolation, biological activity, biosynthesis, and synthesis 从中药中分离的螺酮类天然产物:分离、生物活性、生物合成和合成。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-21 DOI: 10.1039/D5NP00035A
Eilidh G. Young, Freda F. Li and Margaret A. Brimble

Covering: 2010 to December 2024

Traditional Chinese medicine is an ancient knowledge base of therapeutic plants and preparations. Today, the isolation of bioactive natural products from traditional Chinese medicine is a valuable tool to identify new scaffolds for drug discovery. One such scaffold, the spiroketal moiety, is widespread in bioactive natural products, often crucial to the bioactivity of the compound. The convergent evolution of the spiroketal moiety in natural products arising from diverse phylogenetic and biosynthetic origins is a hallmark of the biological importance of this moiety. This review aims to highlight the diverse biosynthetic origins and ensuant structural diversity of spiroketal natural products isolated from traditional Chinese medicine, along with their potent and wide array of biological activities, and synthetic approaches to access these natural products to date.

涵盖:2010年至2024年12月中药是一个古老的治疗植物和制剂的知识库。今天,从传统中药中分离出具有生物活性的天然产物是鉴定新药物开发支架的宝贵工具。一种这样的支架,螺旋形部分,广泛存在于生物活性天然产物中,通常对化合物的生物活性至关重要。从不同的系统发育和生物合成起源中产生的天然产物中螺旋形部分的趋同进化是该部分的生物学重要性的标志。本文综述了从中药中分离的螺旋体天然产物的生物合成来源和结构多样性,以及它们广泛而有效的生物活性,以及迄今为止获取这些天然产物的合成方法。
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引用次数: 0
Green genes from blue greens: challenges and solutions to unlocking the potential of cyanobacteria in drug discovery. 来自蓝色绿色的绿色基因:挑战和解决方案,以解锁药物发现蓝藻的潜力。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-15 DOI: 10.1039/d5np00016e
Benjamin Philmus, Nicole E Avalon, Yousong Ding, Drew T Doering, Alessandra S Eustáquio, William H Gerwick, Hendrik Luesch, Jimmy Orjala, Shaz Sutherland, Arnaud Taton, Daniel Udwary

Cyanobacteria are prolific producers of biologically active compounds that are important in influencing ecology, behavior of interacting organisms, and as leads in drug discovery efforts. Here we discuss the challenges faced by all natural product researchers, especially those that focus on cyanobacteria, and then describe progress that has been made in these areas. We also propose some solutions, paths forward, and thoughts for consideration on these challenges.

蓝藻是多产的生物活性化合物的生产者,在影响生态,相互作用的生物体的行为是重要的,并在药物发现努力的领导。在这里,我们讨论所面临的挑战,所有天然产品的研究人员,特别是那些专注于蓝藻,然后描述已在这些领域取得的进展。针对这些挑战,我们也提出了一些解决方案、前进路径和思考。
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引用次数: 0
Exploring microbial natural products through NMR-based metabolomics 通过核磁共振代谢组学探索微生物天然产物。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-11 DOI: 10.1039/d4np00065j
De-Gao Wang , Jia-Qi Hu , Chao-Yi Wang , Teng Liu , Yue-Zhong Li , Changsheng Wu
Covering: 2000. 01 to 2025. 03
The soaring demand for novel drugs has led to an increase in the requirement for smart methods to aid in the exploration of microbial natural products (NPs). Cutting-edge metabolomics excels at prompt identification of compounds from complex mixtures and accordingly accelerates the targeted discovery process. Although MS-based metabolomics has become a staple in this field, the utilization of NMR-based metabolomics has severely trailed in comparison. Herein, we summarize the key methodological advancements in 1D and 2D NMR techniques in the past two decades, especially for the invention of computational technologies and/or introduction of artificial intelligence for automated data processing, which significantly strengthen the ability of NMR-based metabolomics to analyze crude microbial extracts. Preliminary fractionation is advocated to deconvolute samples and thus enhance detection sensitivity towards minor components overshadowed by a complex matrix. Particularly, the synergistic application of NMR-based metabolomics and genomics provides an expedient approach to correlate biosynthetic gene clusters with cognate metabolites, greatly improving the efficiency of dereplication and, thus, targeted discovery of novel compounds. A variety of microbial NPs involving distinct chemical skeletons and/or biosynthetic logics are enumerated to prove the genuine prowess of NMR-based metabolomics. Overall, this review aims to encourage the broader adoption of NMR-based metabolomics in the realm of microbial NP research.
覆盖:2000。01到2025年。对新药的需求激增导致对智能方法的需求增加,以帮助探索微生物天然产物(NPs)。尖端代谢组学擅长于从复杂混合物中迅速识别化合物,从而加速目标发现过程。尽管基于质谱的代谢组学已经成为该领域的主要研究方向,但相比之下,基于核磁共振的代谢组学的应用却严重滞后。在此,我们总结了过去二十年来一维和二维核磁共振技术在方法上的关键进步,特别是计算技术的发明和/或人工智能的引入,用于自动数据处理,这大大增强了基于核磁共振代谢组学分析粗微生物提取物的能力。初步分馏是提倡反卷积样品,从而提高检测灵敏度对次要成分掩盖了一个复杂的矩阵。特别是,基于核磁共振的代谢组学和基因组学的协同应用为生物合成基因簇与同源代谢物的关联提供了一种便利的方法,极大地提高了去复制的效率,从而有针对性地发现新化合物。列举了各种涉及不同化学骨架和/或生物合成逻辑的微生物NPs,以证明基于核磁共振的代谢组学的真正实力。总的来说,这篇综述旨在鼓励在微生物NP研究领域更广泛地采用基于核磁共振的代谢组学。
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引用次数: 0
Recent advances in discovery and biosynthesis of ribosomally synthesized and post-translationally modified peptides (RiPP)-derived lipopeptides 核糖体合成和翻译后修饰肽(RiPP)衍生的脂肽的发现和生物合成的最新进展。
IF 10.6 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-11 DOI: 10.1039/d5np00042d
Shumpei Asamizu
Covering: This review summarizes recent advances in the discovery, biosynthesis, and bioactivity of RiPP-derived lipopeptides, covering studies published up to 2024.
Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a diverse superfamily of natural products unified by a common biosynthetic logic: The peptide backbone is genetically encoded, and the translated precursor peptide undergoes a series of post-translational modifications catalyzed by maturase enzymes to produce the final bioactive compound. Despite their structural complexity, RiPPs are encoded by relatively small biosynthesis gene clusters. RiPP maturase enzymes are diverse and often promiscuous, offering significant biotechnological potential. However, their lack of conserved features makes genome-based discovery of novel RiPPs challenging. Recent advances in biosynthetic understanding and genome mining techniques have led to the identification of numerous uncharacterized RiPP biosynthetic gene clusters, often flanked by genes encoding non-RiPP moieties, in microbial genomes. Leveraging this information, a new class of natural products, hybrids of RiPPs and non-RiPP elements, has recently been discovered. Among them, RiPPs bearing fatty acyl groups, referred to as RiPP-derived lipopeptides, represent a newly emerging class of lipopeptide natural products with significant antimicrobial activity.
内容:本文综述了ripp衍生的脂肽的发现、生物合成和生物活性方面的最新进展,涵盖了截至2024年发表的研究。核糖体合成和翻译后修饰肽(RiPPs)是由一个共同的生物合成逻辑统一的多种天然产物超家族:肽主干是遗传编码的,翻译的前体肽在成熟酶的催化下经历一系列翻译后修饰,产生最终的生物活性化合物。尽管RiPPs结构复杂,但它们是由相对较小的生物合成基因簇编码的。RiPP成熟酶是多种多样的,通常是混杂的,提供了显著的生物技术潜力。然而,它们缺乏保守的特征使得基于基因组的新ripp发现具有挑战性。生物合成理解和基因组挖掘技术的最新进展导致在微生物基因组中鉴定了许多未表征的RiPP生物合成基因簇,这些基因簇通常被编码非RiPP部分的基因所修饰。利用这些信息,最近发现了一类新的天然产物,即ripp和非ripp元素的杂交产物。其中,含有脂肪酰基的ripp,称为ripp衍生的脂肽,是一类新兴的具有显著抗菌活性的脂肽天然产物。
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引用次数: 0
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