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From stem cells to regulatory T cells: A tale of plasticity 从干细胞到调节性 T 细胞:可塑性的故事
IF 23.9 1区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-06-06 DOI: 10.1016/j.stem.2024.05.002
Mehek Ningoo, Miguel Fribourg

In this issue, Yano et al.1 present a method to obtain suppressive regulatory T (Treg) cells from human induced pluripotent stem cells (hiPSCs). This approach has the potential to address the low Treg cell yields of current ex vivo Treg cell expansion and induction protocols, an unmet challenge for autologous Treg cell treatments.

在本期杂志中,Yano 等人1 提出了一种从人类诱导多能干细胞(hiPSCs)中获得抑制性调节性 T(Treg)细胞的方法。这种方法有望解决目前体内外Treg细胞扩增和诱导方案中Treg细胞产量低的问题,而这正是自体Treg细胞治疗所面临的挑战。
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引用次数: 0
Greasing the machinery toward maturation of stem cell-derived β cells 为干细胞衍生β细胞的成熟提供润滑剂
IF 23.9 1区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-06-06 DOI: 10.1016/j.stem.2024.05.001
Christos Karampelias, Heiko Lickert

Getting mature and functional stem cell-derived, insulin-producing β cells is an important step for disease modeling, drug screening, and cell replacement therapy. In this issue, Hua et al.1 used single-cell multiomics analysis coupled with chemical screening to identify a crucial role for ceramides in generating mature stem cell-derived β cells.

获得成熟的功能性干细胞衍生胰岛素分泌β细胞是疾病建模、药物筛选和细胞替代疗法的重要一步。在本期中,Hua等人1利用单细胞多组学分析和化学筛选,确定了神经酰胺在生成成熟干细胞衍生β细胞中的关键作用。
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引用次数: 0
CAR macrophages tuning the immune symphony of anti-cancer therapies CAR 巨噬细胞调节抗癌疗法的免疫交响乐
IF 23.9 1区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-06-06 DOI: 10.1016/j.stem.2024.05.006
Daniela Paasch, Nico Lachmann

Chimeric antigen receptor (CAR) macrophages have broadened the landscape of anti-cancer immunotherapies to combat solid malignancies. Shah et al. introduce CARs to facilitate a CAR macrophage therapy, which aims to recruit and activate T/natural killer cells, further strengthening the overall immune response to decrease pancreatic cancer burden and metastatic spreading.

嵌合抗原受体(CAR)巨噬细胞拓宽了抗癌免疫疗法的领域,以对抗实体恶性肿瘤。Shah 等人引入了 CAR,以促进 CAR 巨噬细胞疗法,该疗法旨在招募和激活 T/自然杀伤细胞,进一步加强整体免疫反应,以减少胰腺癌的负担和转移扩散。
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引用次数: 0
Human iPSC-derived CD4+ Treg-like cells engineered with chimeric antigen receptors control GvHD in a xenograft model 用嵌合抗原受体设计的人 iPSC 衍生 CD4+ Treg 样细胞在异种移植模型中控制 GvHD
IF 23.9 1区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-06-06 DOI: 10.1016/j.stem.2024.05.004
Hisashi Yano, Keiko Koga, Takayuki Sato, Tokuyuki Shinohara, Shoichi Iriguchi, Atsushi Matsuda, Kazuki Nakazono, Maki Shioiri, Yasuyuki Miyake, Yoshiaki Kassai, Hitoshi Kiyoi, Shin Kaneko

CD4+ T cells induced from human iPSCs (iCD4+ T cells) offer a therapeutic opportunity for overcoming immune pathologies arising from hematopoietic stem cell transplantation. However, most iCD4+ T cells are conventional helper T cells, which secrete inflammatory cytokines. We induced high-level expression of FOXP3, a master transcription factor of regulatory T cells, in iCD4+ T cells. Human iPSC-derived, FOXP3-induced CD4+ T (iCD4+ Treg-like) cells did not secrete inflammatory cytokines upon activation. Moreover, they showed demethylation of the Treg-specific demethylation region, suggesting successful conversion to immunosuppressive iCD4+ Treg-like cells. We further assessed these iCD4+ Treg-like cells for CAR-mediated immunosuppressive ability. HLA-A2 CAR-transduced iCD4+ Treg-like cells inhibited CD8+ cytotoxic T cell (CTL) division in a mixed lymphocyte reaction assay with A2+ allogeneic CTLs and suppressed xenogeneic graft-versus-host disease (GVHD) in NSG mice treated with A2+ human PBMCs. In most cases, these cells suppressed the xenogeneic GvHD progression as much as natural CD25+CD127 Tregs did.

由人类iPSC诱导的CD4+ T细胞(iCD4+ T细胞)为克服造血干细胞移植引起的免疫病症提供了治疗机会。然而,大多数 iCD4+ T 细胞是传统的辅助性 T 细胞,会分泌炎性细胞因子。我们诱导 iCD4+ T 细胞高水平表达调节性 T 细胞的主转录因子 FOXP3。由 FOXP3 诱导的人类 iPSC 衍生的 CD4+ T(iCD4+ Treg-like)细胞在激活后不会分泌炎性细胞因子。此外,它们显示出 Treg 特异性去甲基化区域的去甲基化,这表明它们成功地转化为免疫抑制性 iCD4+ Treg 样细胞。我们进一步评估了这些 iCD4+ Treg 样细胞的 CAR 介导的免疫抑制能力。HLA-A2 CAR转化的iCD4+ Treg样细胞在与A2+异体CTLs的混合淋巴细胞反应试验中抑制了CD8+细胞毒性T细胞(CTL)分裂,并抑制了用A2+人类PBMCs治疗的NSG小鼠的异种移植物抗宿主病(GVHD)。在大多数情况下,这些细胞对异种移植物抗宿主疾病进展的抑制作用不亚于天然 CD25+CD127- Tregs。
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引用次数: 0
Long-term engraftment and maturation of autologous iPSC-derived cardiomyocytes in two rhesus macaques 自体 iPSC 衍生心肌细胞在两只猕猴体内的长期移植和成熟
IF 23.9 1区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-06-05 DOI: 10.1016/j.stem.2024.05.005
Yongshun Lin, Noriko Sato, Sogun Hong, Kenta Nakamura, Elisa A. Ferrante, Zu Xi Yu, Marcus Y. Chen, Daisy S. Nakamura, Xiulan Yang, Randall R. Clevenger, Timothy J. Hunt, Joni L. Taylor, Kenneth R. Jeffries, Karen J. Keeran, Lauren E. Neidig, Atul Mehta, Robin Schwartzbeck, Shiqin Judy Yu, Conor Kelly, Keron Navarengom, Cynthia E. Dunbar

Cellular therapies with cardiomyocytes produced from induced pluripotent stem cells (iPSC-CMs) offer a potential route to cardiac regeneration as a treatment for chronic ischemic heart disease. Here, we report successful long-term engraftment and in vivo maturation of autologous iPSC-CMs in two rhesus macaques with small, subclinical chronic myocardial infarctions, all without immunosuppression. Longitudinal positron emission tomography imaging using the sodium/iodide symporter (NIS) reporter gene revealed stable grafts for over 6 and 12 months, with no teratoma formation. Histological analyses suggested capability of the transplanted iPSC-CMs to mature and integrate with endogenous myocardium, with no sign of immune cell infiltration or rejection. By contrast, allogeneic iPSC-CMs were rejected within 8 weeks of transplantation. This study provides the longest-term safety and maturation data to date in any large animal model, addresses concerns regarding neoantigen immunoreactivity of autologous iPSC therapies, and suggests that autologous iPSC-CMs would similarly engraft and mature in human hearts.

用诱导多能干细胞(iPSC-CMs)产生的心肌细胞进行细胞疗法,为治疗慢性缺血性心脏病提供了一条潜在的心脏再生途径。在此,我们报告了自体iPSC-CMs在两只患有小型亚临床慢性心肌梗死的猕猴体内成功实现长期移植和体内成熟的情况,所有这些过程都不需要免疫抑制。使用钠/碘交感器(NIS)报告基因进行的纵向正电子发射断层扫描成像显示,移植物在超过6个月和12个月后保持稳定,没有畸胎瘤形成。组织学分析表明,移植的 iPSC-CMs 能够成熟并与内源性心肌整合,没有免疫细胞浸润或排斥的迹象。相比之下,异体iPSC-CMs在移植后8周内就出现了排斥反应。这项研究提供了迄今为止在任何大型动物模型中最长期的安全性和成熟数据,解决了人们对自体 iPSC 疗法新抗原免疫反应性的担忧,并表明自体 iPSC-CMs 同样会在人类心脏中移植和成熟。
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引用次数: 0
Naive pluripotent stem cell-based models capture FGF-dependent human hypoblast lineage specification 基于原始多能干细胞的模型捕捉到了依赖于 FGF 的人类下胚层细胞系规范
IF 23.9 1区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-31 DOI: 10.1016/j.stem.2024.05.003
Anish Dattani, Elena Corujo-Simon, Arthur Radley, Tiam Heydari, Yasaman Taheriabkenar, Francesca Carlisle, Simeng Lin, Corin Liddle, Jonathan Mill, Peter W. Zandstra, Jennifer Nichols, Ge Guo

The hypoblast is an essential extraembryonic tissue set aside within the inner cell mass in the blastocyst. Research with human embryos is challenging. Thus, stem cell models that reproduce hypoblast differentiation provide valuable alternatives. We show here that human naive pluripotent stem cell (PSC) to hypoblast differentiation proceeds via reversion to a transitional ICM-like state from which the hypoblast emerges in concordance with the trajectory in human blastocysts. We identified a window when fibroblast growth factor (FGF) signaling is critical for hypoblast specification. Revisiting FGF signaling in human embryos revealed that inhibition in the early blastocyst suppresses hypoblast formation. In vitro, the induction of hypoblast is synergistically enhanced by limiting trophectoderm and epiblast fates. This finding revises previous reports and establishes a conservation in lineage specification between mice and humans. Overall, this study demonstrates the utility of human naive PSC-based models in elucidating the mechanistic features of early human embryogenesis.

低胚泡是胚泡内部细胞团中的一个重要胚外组织。利用人类胚胎进行研究具有挑战性。因此,能再现下胚层分化的干细胞模型提供了有价值的替代方案。我们在此表明,人类天真多能干细胞(PSC)向低体细胞分化的过程是通过还原到类似于ICM的过渡状态,低体细胞从这种状态中出现,与人类胚泡的分化轨迹一致。我们发现了成纤维细胞生长因子(FGF)信号传导对低分化母细胞分化至关重要的窗口期。重新审视人类胚胎中的成纤维细胞生长因子信号转导发现,在早期囊胚中抑制成纤维细胞生长因子信号转导可抑制低分化母细胞的形成。在体外,通过限制滋养层外胚层和上胚层的命运,可协同增强对低胚泡的诱导。这一发现修正了之前的报道,并确立了小鼠和人类在系谱规范方面的一致性。总之,这项研究证明了基于人类天真造血干细胞的模型在阐明人类早期胚胎发生机理特征方面的实用性。
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引用次数: 0
SDHAF1 confers metabolic resilience to aging hematopoietic stem cells by promoting mitochondrial ATP production SDHAF1通过促进线粒体ATP的产生,赋予衰老造血干细胞新陈代谢的恢复能力
IF 23.9 1区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-20 DOI: 10.1016/j.stem.2024.04.023
Shintaro Watanuki, Hiroshi Kobayashi, Yuki Sugiura, Masamichi Yamamoto, Daiki Karigane, Kohei Shiroshita, Yuriko Sorimachi, Takayuki Morikawa, Shinya Fujita, Kotaro Shide, Miho Haraguchi, Shinpei Tamaki, Takumi Mikawa, Hiroshi Kondoh, Hiroyasu Nakano, Kenta Sumiyama, Go Nagamatsu, Nobuhito Goda, Shinichiro Okamoto, Ayako Nakamura-Ishizu, Keiyo Takubo

Aging generally predisposes stem cells to functional decline, impairing tissue homeostasis. Here, we report that hematopoietic stem cells (HSCs) acquire metabolic resilience that promotes cell survival. High-resolution real-time ATP analysis with glucose tracing and metabolic flux analysis revealed that old HSCs reprogram their metabolism to activate the pentose phosphate pathway (PPP), becoming more resistant to oxidative stress and less dependent on glycolytic ATP production at steady state. As a result, old HSCs can survive without glycolysis, adapting to the physiological cytokine environment in bone marrow. Mechanistically, old HSCs enhance mitochondrial complex II metabolism during stress to promote ATP production. Furthermore, increased succinate dehydrogenase assembly factor 1 (SDHAF1) in old HSCs, induced by physiological low-concentration thrombopoietin (TPO) exposure, enables rapid mitochondrial ATP production upon metabolic stress, thereby improving survival. This study provides insight into the acquisition of resilience through metabolic reprogramming in old HSCs and its molecular basis to ameliorate age-related hematopoietic abnormalities.

衰老通常会导致干细胞功能衰退,损害组织稳态。在这里,我们报告了造血干细胞(HSCs)获得了促进细胞存活的代谢恢复能力。通过葡萄糖追踪和代谢通量分析进行的高分辨率实时ATP分析表明,老年造血干细胞重塑了新陈代谢,激活了磷酸戊糖途径(PPP),变得更能抵抗氧化应激,在稳态时对糖酵解ATP生成的依赖性降低。因此,老年造血干细胞可以在没有糖酵解的情况下存活,从而适应骨髓中的细胞因子生理环境。从机制上讲,老年造血干细胞在应激时会增强线粒体复合体 II 的代谢,以促进 ATP 的产生。此外,在生理性低浓度血小板生成素(TPO)暴露的诱导下,老年造血干细胞中琥珀酸脱氢酶组装因子1(SDHAF1)的增加可使线粒体在代谢应激时快速产生ATP,从而提高存活率。这项研究深入探讨了老年造血干细胞通过代谢重编程获得复原力的过程及其分子基础,从而改善与年龄相关的造血异常。
{"title":"SDHAF1 confers metabolic resilience to aging hematopoietic stem cells by promoting mitochondrial ATP production","authors":"Shintaro Watanuki, Hiroshi Kobayashi, Yuki Sugiura, Masamichi Yamamoto, Daiki Karigane, Kohei Shiroshita, Yuriko Sorimachi, Takayuki Morikawa, Shinya Fujita, Kotaro Shide, Miho Haraguchi, Shinpei Tamaki, Takumi Mikawa, Hiroshi Kondoh, Hiroyasu Nakano, Kenta Sumiyama, Go Nagamatsu, Nobuhito Goda, Shinichiro Okamoto, Ayako Nakamura-Ishizu, Keiyo Takubo","doi":"10.1016/j.stem.2024.04.023","DOIUrl":"https://doi.org/10.1016/j.stem.2024.04.023","url":null,"abstract":"<p>Aging generally predisposes stem cells to functional decline, impairing tissue homeostasis. Here, we report that hematopoietic stem cells (HSCs) acquire metabolic resilience that promotes cell survival. High-resolution real-time ATP analysis with glucose tracing and metabolic flux analysis revealed that old HSCs reprogram their metabolism to activate the pentose phosphate pathway (PPP), becoming more resistant to oxidative stress and less dependent on glycolytic ATP production at steady state. As a result, old HSCs can survive without glycolysis, adapting to the physiological cytokine environment in bone marrow. Mechanistically, old HSCs enhance mitochondrial complex II metabolism during stress to promote ATP production. Furthermore, increased succinate dehydrogenase assembly factor 1 (SDHAF1) in old HSCs, induced by physiological low-concentration thrombopoietin (TPO) exposure, enables rapid mitochondrial ATP production upon metabolic stress, thereby improving survival. This study provides insight into the acquisition of resilience through metabolic reprogramming in old HSCs and its molecular basis to ameliorate age-related hematopoietic abnormalities.</p>","PeriodicalId":9665,"journal":{"name":"Cell stem cell","volume":null,"pages":null},"PeriodicalIF":23.9,"publicationDate":"2024-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141069209","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Efficient expansion and CRISPR-Cas9-mediated gene correction of patient-derived hepatocytes for treatment of inherited liver diseases 高效扩增和 CRISPR-Cas9 介导的患者衍生肝细胞基因校正用于治疗遗传性肝病
IF 23.9 1区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-20 DOI: 10.1016/j.stem.2024.04.022
Kun Zhang, Ping Wan, Liren Wang, Zhen Wang, Fangzhi Tan, Jie Li, Xiaolong Ma, Jin Cen, Xiang Yuan, Yang Liu, Zhen Sun, Xi Cheng, Yuanhua Liu, Xuhao Liu, Jiazhi Hu, Guisheng Zhong, Dali Li, Qiang Xia, Lijian Hui

Cell-based ex vivo gene therapy in solid organs, especially the liver, has proven technically challenging. Here, we report a feasible strategy for the clinical application of hepatocyte therapy. We first generated high-quality autologous hepatocytes through the large-scale expansion of patient-derived hepatocytes. Moreover, the proliferating patient-derived hepatocytes, together with the AAV2.7m8 variant identified through screening, enabled CRISPR-Cas9-mediated targeted integration efficiently, achieving functional correction of pathogenic mutations in FAH or OTC. Importantly, these edited hepatocytes repopulated the injured mouse liver at high repopulation levels and underwent maturation, successfully treating mice with tyrosinemia following transplantation. Our study combines ex vivo large-scale cell expansion and gene editing in patient-derived transplantable hepatocytes, which holds potential for treating human liver diseases.

事实证明,在实体器官(尤其是肝脏)中进行基于细胞的体外基因治疗在技术上具有挑战性。在此,我们报告了肝细胞疗法临床应用的可行策略。我们首先通过大规模扩增患者肝细胞生成高质量的自体肝细胞。此外,增殖的患者来源肝细胞与通过筛选确定的 AAV2.7m8 变体一起,实现了 CRISPR-Cas9 介导的高效靶向整合,实现了对 FAH 或 OTC 中致病突变的功能性校正。重要的是,这些经过编辑的肝细胞能在损伤的小鼠肝脏中进行高水平的再填充和成熟,并在移植后成功治疗了酪氨酸血症小鼠。我们的研究结合了体外大规模细胞扩增和基因编辑患者来源的可移植肝细胞,这为治疗人类肝病提供了潜力。
{"title":"Efficient expansion and CRISPR-Cas9-mediated gene correction of patient-derived hepatocytes for treatment of inherited liver diseases","authors":"Kun Zhang, Ping Wan, Liren Wang, Zhen Wang, Fangzhi Tan, Jie Li, Xiaolong Ma, Jin Cen, Xiang Yuan, Yang Liu, Zhen Sun, Xi Cheng, Yuanhua Liu, Xuhao Liu, Jiazhi Hu, Guisheng Zhong, Dali Li, Qiang Xia, Lijian Hui","doi":"10.1016/j.stem.2024.04.022","DOIUrl":"https://doi.org/10.1016/j.stem.2024.04.022","url":null,"abstract":"<p>Cell-based <em>ex vivo</em> gene therapy in solid organs, especially the liver, has proven technically challenging. Here, we report a feasible strategy for the clinical application of hepatocyte therapy. We first generated high-quality autologous hepatocytes through the large-scale expansion of patient-derived hepatocytes. Moreover, the proliferating patient-derived hepatocytes, together with the AAV2.7m8 variant identified through screening, enabled CRISPR-Cas9-mediated targeted integration efficiently, achieving functional correction of pathogenic mutations in FAH or OTC. Importantly, these edited hepatocytes repopulated the injured mouse liver at high repopulation levels and underwent maturation, successfully treating mice with tyrosinemia following transplantation. Our study combines <em>ex vivo</em> large-scale cell expansion and gene editing in patient-derived transplantable hepatocytes, which holds potential for treating human liver diseases.</p>","PeriodicalId":9665,"journal":{"name":"Cell stem cell","volume":null,"pages":null},"PeriodicalIF":23.9,"publicationDate":"2024-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141069215","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Modified lentiviral globin gene therapy for pediatric β0/β0 transfusion-dependent β-thalassemia: A single-center, single-arm pilot trial 改良慢病毒球蛋白基因疗法治疗小儿 β0/β0 输血依赖型 β 地中海贫血症:单中心、单臂试验
IF 23.9 1区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-16 DOI: 10.1016/j.stem.2024.04.021
Shiqi Li, Sikai Ling, Dawei Wang, Xiaoyuan Wang, Fangyuan Hao, Liufan Yin, Zhongtao Yuan, Lin Liu, Lin Zhang, Yu Li, Yingnian Chen, Le Luo, Ying Dai, Lihua Zhang, Lvzhe Chen, Dongjie Deng, Wei Tang, Sujiang Zhang, Sanbin Wang, Yujia Cai

β00 thalassemia is the most severe type of transfusion-dependent β-thalassemia (TDT) and is still a challenge facing lentiviral gene therapy. Here, we report the interim analysis of a single-center, single-arm pilot trial (NCT05015920) evaluating the safety and efficacy of a β-globin expression-optimized and insulator-engineered lentivirus-modified cell product (BD211) in β00 TDT. Two female children were enrolled, infused with BD211, and followed up for an average of 25.5 months. Engraftment of genetically modified hematopoietic stem and progenitor cells was successful and sustained in both patients. No unexpected safety issues occurred during conditioning or after infusion. Both patients achieved transfusion independence for over 22 months. The treatment extended the lifespan of red blood cells by over 42 days. Single-cell DNA/RNA-sequencing analysis of the dynamic changes of gene-modified cells, transgene expression, and oncogene activation showed no notable adverse effects. Optimized lentiviral gene therapy may safely and effectively treat all β-thalassemia.

β0/β0地中海贫血症是输血依赖型β地中海贫血症(TDT)中最严重的类型,目前仍是慢病毒基因疗法面临的挑战。在此,我们报告了一项单中心、单臂试点试验(NCT05015920)的中期分析,该试验评估了β-球蛋白表达优化和绝缘体工程化的慢病毒修饰细胞产品(BD211)在β0/β0 TDT 中的安全性和有效性。两名女童接受了 BD211 的输注,并接受了平均 25.5 个月的随访。两名患者的基因修饰造血干细胞和祖细胞移植成功并持续。在调理期间或输注后没有出现意外的安全问题。两名患者都实现了超过22个月的独立输血。治疗使红细胞的寿命延长了42天以上。对基因修饰细胞的动态变化、转基因表达和癌基因活化进行的单细胞DNA/RNA测序分析表明,没有发现明显的不良反应。经过优化的慢病毒基因疗法可安全有效地治疗所有β地中海贫血症。
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引用次数: 0
Deciphering lineage specification during early embryogenesis in mouse gastruloids using multilayered proteomics 利用多层蛋白质组学破译小鼠胃肠早期胚胎发育过程中的血统规范
IF 23.9 1区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-15 DOI: 10.1016/j.stem.2024.04.017
Suzan Stelloo, Maria Teresa Alejo-Vinogradova, Charlotte A.G.H. van Gelder, Dick W. Zijlmans, Marek J. van Oostrom, Juan Manuel Valverde, Lieke A. Lamers, Teja Rus, Paula Sobrevals Alcaraz, Tilman Schäfers, Cristina Furlan, Pascal W.T.C. Jansen, Marijke P.A. Baltissen, Katharina F. Sonnen, Boudewijn Burgering, Maarten A.F.M. Altelaar, Harmjan R. Vos, Michiel Vermeulen

Gastrulation is a critical stage in embryonic development during which the germ layers are established. Advances in sequencing technologies led to the identification of gene regulatory programs that control the emergence of the germ layers and their derivatives. However, proteome-based studies of early mammalian development are scarce. To overcome this, we utilized gastruloids and a multilayered mass spectrometry-based proteomics approach to investigate the global dynamics of (phospho) protein expression during gastruloid differentiation. Our findings revealed many proteins with temporal expression and unique expression profiles for each germ layer, which we also validated using single-cell proteomics technology. Additionally, we profiled enhancer interaction landscapes using P300 proximity labeling, which revealed numerous gastruloid-specific transcription factors and chromatin remodelers. Subsequent degron-based perturbations combined with single-cell RNA sequencing (scRNA-seq) identified a critical role for ZEB2 in mouse and human somitogenesis. Overall, this study provides a rich resource for developmental and synthetic biology communities endeavoring to understand mammalian embryogenesis.

胚层形成是胚胎发育的关键阶段,在这一阶段胚层得以建立。随着测序技术的进步,人们发现了控制胚层及其衍生物出现的基因调控程序。然而,基于蛋白质组的哺乳动物早期发育研究却很少。为了克服这一问题,我们利用胃肠动物和基于多层质谱的蛋白质组学方法研究了胃肠动物分化过程中(磷酸)蛋白表达的整体动态。我们的发现揭示了许多蛋白质的时间表达和每个胚层独特的表达谱,我们还利用单细胞蛋白质组学技术对其进行了验证。此外,我们还利用 P300 接近标记技术分析了增强子相互作用图谱,发现了许多胃肠道特异性转录因子和染色质重塑因子。随后进行的基于去核糖体的扰动结合单细胞 RNA 测序(scRNA-seq)确定了 ZEB2 在小鼠和人类体细胞发生中的关键作用。总之,这项研究为致力于了解哺乳动物胚胎发生的发育生物学和合成生物学界提供了丰富的资源。
{"title":"Deciphering lineage specification during early embryogenesis in mouse gastruloids using multilayered proteomics","authors":"Suzan Stelloo, Maria Teresa Alejo-Vinogradova, Charlotte A.G.H. van Gelder, Dick W. Zijlmans, Marek J. van Oostrom, Juan Manuel Valverde, Lieke A. Lamers, Teja Rus, Paula Sobrevals Alcaraz, Tilman Schäfers, Cristina Furlan, Pascal W.T.C. Jansen, Marijke P.A. Baltissen, Katharina F. Sonnen, Boudewijn Burgering, Maarten A.F.M. Altelaar, Harmjan R. Vos, Michiel Vermeulen","doi":"10.1016/j.stem.2024.04.017","DOIUrl":"https://doi.org/10.1016/j.stem.2024.04.017","url":null,"abstract":"<p>Gastrulation is a critical stage in embryonic development during which the germ layers are established. Advances in sequencing technologies led to the identification of gene regulatory programs that control the emergence of the germ layers and their derivatives. However, proteome-based studies of early mammalian development are scarce. To overcome this, we utilized gastruloids and a multilayered mass spectrometry-based proteomics approach to investigate the global dynamics of (phospho) protein expression during gastruloid differentiation. Our findings revealed many proteins with temporal expression and unique expression profiles for each germ layer, which we also validated using single-cell proteomics technology. Additionally, we profiled enhancer interaction landscapes using P300 proximity labeling, which revealed numerous gastruloid-specific transcription factors and chromatin remodelers. Subsequent degron-based perturbations combined with single-cell RNA sequencing (scRNA-seq) identified a critical role for ZEB2 in mouse and human somitogenesis. Overall, this study provides a rich resource for developmental and synthetic biology communities endeavoring to understand mammalian embryogenesis.</p>","PeriodicalId":9665,"journal":{"name":"Cell stem cell","volume":null,"pages":null},"PeriodicalIF":23.9,"publicationDate":"2024-05-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140942786","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Cell stem cell
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