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Oxidative Defect Detection Within Free and Packed DNA Systems: A Quantum Mechanical/Molecular Mechanics (QM/ MM) Approach 自由和堆积 DNA 系统内的氧化缺陷检测:量子力学/分子力学(QM/MM)方法
IF 1.2 4区 化学 Q3 Chemistry Pub Date : 2024-04-24 DOI: 10.2533/chimia.2024.243
Sophia K. Johnson, Ursula Rothlisberger
Base excision repair enzymes (BERs) detect and repair oxidative DNA damage with efficacy despite the small size of the defects and their often only minor structural impact. A charge transfer (CT) model for rapid scanning of DNA stretches has been evoked to explain the high detection rate in the face of numerous, small lesions. The viability of CT DNA defect detection is explored via hybrid QM/MM computational studies that leverage the accuracy of quantum mechanics (QM) for a region of interest and the descriptive power of molecularmechanics (MM) for the remainder of the system. We find that the presence of an oxidative lesion lowers theredox free energy of oxidation by approximately 1.0 eV regardless of DNA compaction (free DNA versus packed DNA in nucleosome core particles) and damage location indicating the high feasibility of a CT-based process for defect detection in DNA.
碱基切除修复酶(BER)能有效地检测和修复氧化 DNA 损伤,尽管缺陷很小,对结构的影响也很小。一种用于快速扫描 DNA 片段的电荷转移(CT)模型被用来解释在面对大量小缺陷时的高检测率。CT DNA 缺陷检测的可行性通过 QM/MM 混合计算研究进行了探讨,该研究利用量子力学(QM)对感兴趣区域的准确性和分子力学(MM)对系统其余部分的描述能力。我们发现,无论 DNA 的压实度(游离 DNA 与核糖体核心颗粒中的包装 DNA)和损伤位置如何,氧化性病变的存在都会使氧化还原自由能降低约 1.0 eV,这表明基于 CT 的 DNA 缺陷检测过程具有很高的可行性。
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引用次数: 0
Tuning NaCo(II) Bimetallic Cooperativity to Perform Co–H Exchange / C–F Bond Activation Processes in Polyfluoroarenes 调谐 NaCo(II) 双金属合作性以执行多氟烯中的 Co-H 交换/C-F 键活化过程
IF 1.2 4区 化学 Q3 Chemistry Pub Date : 2024-04-24 DOI: 10.2533/chimia.2024.238
Alessandra Logallo, Eva Hevia
Recent advances in cooperative chemistry have shown the potential of heterobimetallic complexes combining an alkali-metal with an earth abundant divalent transition metal for the functionalisation of synthetically relevant aromatic molecules via deprotonative metalation. Pairing sodium with cobalt (II), here we provide an overview of the reactivity of bimetallic [NaCo(HMDS)3] [HMDS = N(SiMe3)2] towards C-H and C-F functionalisation of a wide range of perfluorinated molecules. These studies also uncover the enormous potential of this heterobimetallic base to perform Co-H exchanges with excellent selectivity and exceptional stoichiometric control as well as shedding light on the key role played by the alkali-metal.
合作化学领域的最新进展表明,碱金属与土含量丰富的二价过渡金属结合的异双金属配合物具有通过去质子金属化作用对合成相关的芳香族分子进行官能化的潜力。将钠与钴(II)配对,我们在此概述了双金属 [NaCo(HMDS)3] [HMDS = N(SiMe3)2] 对多种全氟分子的 C-H 和 C-F 功能化反应。这些研究还揭示了这种杂多双金属基在进行 Co-H 交换方面的巨大潜力,具有极佳的选择性和卓越的化学计量控制能力,并阐明了碱金属所起的关键作用。
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引用次数: 0
Editorial. 社论
IF 1.2 4区 化学 Q3 Chemistry Pub Date : 2024-04-24
Eva Hevia, Hans Peter Lüthi
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引用次数: 0
Silylium-Catalyzed Activation of Donor- Acceptor Strained Rings and Annulation with Indoles 硅烷基催化活化供体-受体应变环并与吲哚嵌合
IF 1.2 4区 化学 Q3 Chemistry Pub Date : 2024-04-24 DOI: 10.2533/chimia.2024.234
E. L. Robert, J. Waser
Leveraging the unique reactivity profile of donor-acceptor aminocyclopropanes and cyclobutanes allows the preparation of complex nitrogen-substituted molecules. While most reports focus on donor-acceptor strained rings with two geminal carbonyl groups as acceptors, mono carbonyl acceptor systems, despite their synthetic relevance, have been considerably less studied. Herein we describe catalytic annulation reactions ofaminocyclopropane and aminocyclobutane monoesters employing silylium catalysis to activate these less reactive donor-acceptor systems.
利用供体-受体氨基环丙烷和环丁烷的独特反应特性,可以制备复杂的氮取代分子。大多数报道都集中在以两个羰基作为受体的供体-受体应变环上,而单羰基受体体系尽管与合成相关,但研究却少得多。在此,我们介绍了利用硅烷基催化活化这些反应性较低的供体-受体系统的氨基环丙烷和氨基环丁烷单酯的催化环化反应。
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引用次数: 0
Solving Intractable Chemical Problems by Tensor Decomposition. 用张量分解法解决棘手的化学问题
IF 1.2 4区 化学 Q3 Chemistry Pub Date : 2024-04-24 DOI: 10.2533/chimia.2024.215
Nina Glaser, Markus Reiher

Many complex chemical problems encoded in terms of physics-based models become computationally intractable for traditional numerical approaches due to their unfavorable scaling with increasing molecular size. Tensor decomposition techniques can overcome such challenges by decomposing unattainably large numerical representations of chemical problems into smaller, tractable ones. In the first two decades of this century, algorithms based on such tensor factorizations have become state-of-the-art methods in various branches of computational chemistry, ranging from molecular quantum dynamics to electronic structure theory and machine learning. Here, we consider the role that tensor decomposition schemes have played in expanding the scope of computational chemistry. We relate some of the most prominent methods to their common underlying tensor network formalisms, providing a unified perspective on leading tensor-based approaches in chemistry and materials science.

许多复杂的化学问题都是以物理模型为基础进行编码的,由于其不利于随着分子尺寸的增大而缩放,传统的数值方法在计算上变得难以解决。张量分解技术可以将难以实现的庞大化学问题数值表示分解成更小、更容易处理的问题,从而克服这些挑战。本世纪头二十年,基于这种张量因式分解的算法已成为计算化学各个分支的最先进方法,包括分子量子动力学、电子结构理论和机器学习等。在此,我们将探讨张量分解方案在拓展计算化学领域方面所发挥的作用。我们将一些最著名的方法与其共同的基础张量网络形式联系起来,为化学和材料科学领域基于张量的领先方法提供了一个统一的视角。
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引用次数: 0
Up-scaling a Sol-Gel Process for the Production of a Multi-Component Xerogel Powder. 升级溶胶-凝胶工艺以生产多组分 Xerogel 粉末。
IF 1.2 4区 化学 Q3 Chemistry Pub Date : 2024-03-27 DOI: 10.2533/chimia.2024.142
Barbara Pföss, Jonathan Caldi, Sutida Jansod, Christophe Allemann, Pierre Brodard, Roger Marti

A sol-gel process for the synthesis of a multi-component oxide material from the system SiO2-ZrO2-Al2O3underwent optimization and up-scaling. Initially, on a laboratory scale, components including precursors, catalysts, and additives were methodically evaluated to ensure a safe and efficient transition to larger volumes. Subsequently, the equipment for the whole setup of the sol-gel process was strategically selected. Leveraging insights from these optimizations, the process was successfully scaled-up to pilot-scale operation, conducting hydrolysis, condensation reactions, gelation, aging, and drying within a single, integrated conical dryer system for an 80 L batch. A visual test and FTIR spectroscopy were applied for process control and monitoring.

从 SiO2-ZrO2-Al2O3 系统中合成多组分氧化物材料的溶胶-凝胶工艺经过了优化和升级。最初,在实验室规模上,对包括前驱体、催化剂和添加剂在内的组分进行了有条不紊的评估,以确保安全高效地过渡到更大的规模。随后,对整个溶胶-凝胶工艺的设备进行了战略性选择。利用这些优化过程中获得的洞察力,该工艺成功地扩大到了中试规模,在单个集成锥形干燥器系统内进行了水解、缩合反应、凝胶化、老化和干燥,批量为 80 升。目测和傅立叶变换红外光谱法被用于过程控制和监测。
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引用次数: 0
Reducing Endotoxin Contamination in Biopharmaceuticals for Happier Biotechnologist? 减少生物制药中的内毒素污染,让生物技术人员更快乐?
IF 1.2 4区 化学 Q3 Chemistry Pub Date : 2024-03-27 DOI: 10.2533/chimia.2024.164
Anika Hoffmann, Kevin Pacios, Franka Kalman
(DMB), and separated by HPLC from matrix compounds. The endotoxin concentration was analysed in
(DMB),并通过高效液相色谱法从基质化合物中分离出来。内毒素浓度的分析以
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引用次数: 0
40 Years of Surface Science and Nanotechnology (40Nano) 表面科学和纳米技术 40 年(40 纳米)
IF 1.2 4区 化学 Q3 Chemistry Pub Date : 2024-03-27 DOI: 10.2533/chimia.2024.169
Karl-Heinz Ernst
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引用次数: 0
Enhanced Mechanistic Understanding Through the Detection of Radical Intermediates in Organic Reactions. 通过检测有机反应中的自由基中间体增强对机理的理解。
IF 1.2 4区 化学 Q3 Chemistry Pub Date : 2024-03-27 DOI: 10.2533/chimia.2024.123
Ivan Ocaña, Peter J H Williams, James Donald, Neil Griffin, George Hodges, Andrew R Rickard, Victor Chechik

Two applications of a radical trap based on a homolytic substitution reaction (SH2') are presented for the trapping of short-lived radical intermediates in organic reactions. The first example is a photochemical cyanomethylation catalyzed by a Ru complex. Two intermediate radicals in the radical chain propagation have been trapped and detected using mass spectrometry (MS), along with the starting materials, products and catalyst degradation fragments. Although qualitative, these results helped to elucidate the reaction mechanism. In the second example, the trapping method was applied to study the radical initiation catalyzed by a triethylboronoxygen mixture. In this case, the concentration of trapped radicals was sufficiently high to enable their detection by nuclear magnetic resonance (NMR). Quantitative measurements made it possible to characterize the radical flux in the system under different reaction conditions (including variations of solvent, temperature and concentration) where modelling was complicated by chain reactions and heterogeneous mass transfer.

本文介绍了基于同溶取代反应(SH2')的自由基捕获器在有机反应中捕获短寿命自由基中间体的两种应用。第一个例子是由 Ru 复合物催化的光化学氰甲基化反应。利用质谱法(MS)捕获并检测了自由基链传播过程中的两个中间自由基以及起始材料、产物和催化剂降解碎片。这些结果虽然是定性的,但有助于阐明反应机理。在第二个例子中,诱捕法被用于研究三乙基硼氧混合物催化的自由基引发。在这种情况下,被捕获自由基的浓度足够高,可以通过核磁共振(NMR)对其进行检测。通过定量测量,可以确定在不同反应条件(包括溶剂、温度和浓度的变化)下系统中自由基通量的特征,而链式反应和异质传质使建模变得复杂。
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引用次数: 0
Industrial Distillation Aspects of Diketene. Diketene 的工业蒸馏方面。
IF 1.2 4区 化学 Q3 Chemistry Pub Date : 2024-03-27 DOI: 10.2533/chimia.2024.148
Mehmet Ogün Biçer, Erik Von Harbou, Andreas Klein, Hilke-Marie Lorenz, Christoph Taeschler

Large-scale distillation is a challenge in many respects. Particularly difficult is the purification by distillation of a compound with limited thermal stability. This article describes various aspects of these difficulties with some possible solutions. Special emphasis is placed on the collaboration of different disciplines to find pragmatic solutions to these challenges. The purification of diketene in quantities of several 1000 ta-1 is an excellent example to illustrate the different requirements. Although the distillation of diketene has been carried out by several companies for many years, there are still some aspects that deserve special attention.

大规模蒸馏在许多方面都是一项挑战。通过蒸馏提纯热稳定性有限的化合物尤其困难。本文介绍了这些困难的各个方面以及一些可能的解决方案。文章特别强调了不同学科之间的合作,以找到应对这些挑战的实用解决方案。提纯 1000 ta-1 量级的二乙烯就是一个很好的例子,可以说明不同的要求。尽管多家公司多年来一直在进行二乙烯蒸馏,但仍有一些方面值得特别关注。
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引用次数: 0
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