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Nitrogen metabolic characteristics and adaptive mechanisms of Paracoccus sp. QD-21 under complex nitrogenous environments. 副球菌sp. QD-21在复杂氮环境下的氮代谢特性及适应机制
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-03-21 DOI: 10.1007/s10532-026-10272-3
Yuhong Zhang, Xiruo Wang, Xianbo Dong, Jiacheng Cai, Wensong Gao

A novel strain of Paracoccus sp. QD-21, which is capable of simultaneous heterotrophic nitrification and aerobic denitrification, was isolated and investigated for the potential in removal of nitrogen in wastewater treatment. The strain exhibited nitrogen removal rates of 5.55, 3.35, and 2.78 mg/(L·h) for NH4+-N (100 mg/L), NO2--N (100 mg/L), and NO3--N (100 mg/L), respectively. Notably, QD-21 maintained substantial nitrogen removal efficiency under high concentrations of inorganic nitrogen, highlighting its remarkable tolerance to complex nitrogenous conditions. Optimal nitrogen removal occurred with sodium succinate as carbon source, C/N 7:1, pH 8.41, 140 rpm, 38.41 °C, and inoculum size 4.56% (v/v). Analysis using molecular biology techniques revealed the presence of genes associated with the nitrification process, such as amo and hao, in QD-21. This confirms the nitrification pathway of strain: NH4+-N → NH2OH → NO2--N → NO3--N. Additionally, the presence of nirK, norB, and nosZ confirms the denitrification pathway in QD-21: NO3--N → NO2--N → NO → N2O → N2. Meanwhile, the presence of nirBD, nark, glnL, glnA, gltB, and nasA indicates that a portion of nitrogen is assimilated into biomass through the ammonia assimilation pathway, which supports cellular biosynthesis and growth at the expense of metabolic energy. Furthermore, in practical wastewater tests QD-21 achieved removal efficiencies of 75.5% for NH4+-N and 55.8% for COD. Such findings demonstrate the great potential of strain QD-21 in treating nitrogen pollution from diverse sources.

分离出一株同时具有异养硝化和好氧反硝化作用的副球菌QD-21,并对其在废水处理中的脱氮潜力进行了研究。菌株对NH4+-N (100 mg/L)、NO2—N (100 mg/L)和NO3—N (100 mg/L)的氮去除率分别为5.55、3.35和2.78 mg/(L·h)。值得注意的是,QD-21在高浓度无机氮条件下仍能保持较高的脱氮效率,这表明其对复杂的氮素条件具有较强的耐受性。以琥珀酸钠为碳源,C/N为7:1,pH为8.41,140 rpm, 38.41°C,接种量为4.56% (v/v)时脱氮效果最佳。利用分子生物学技术分析发现,QD-21中存在与硝化过程相关的基因,如amo和hao。这证实了菌株的硝化途径:NH4+-N→NH2OH→NO2—N→NO3—N。此外,nirK、norB和nosZ的存在证实了QD-21的反硝化途径:NO3—N→NO2—N→NO→N2O→N2。同时,nirBD、ark、glnL、glnA、gltB和nasA的存在表明,一部分氮通过氨同化途径被吸收到生物质中,以牺牲代谢能量为代价支持细胞的生物合成和生长。此外,在实际废水试验中,QD-21对NH4+-N的去除率为75.5%,对COD的去除率为55.8%。这些发现表明菌株QD-21在处理各种来源的氮污染方面具有巨大的潜力。
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引用次数: 0
An improved fully-automated GMP radiosynthesis of [18F]fluoro-pivalic acid with solid-phase extraction purification. 一种改进的全自动化GMP放射合成[18F]氟戊酸固相萃取纯化。
IF 4.4 Q1 CHEMISTRY, INORGANIC & NUCLEAR Pub Date : 2026-03-21 DOI: 10.1186/s41181-026-00440-4
Chris Barnes, Frazer Twyman, Ramla O Awais, Dylan Pritchard, Matthias Glaser, David R Turton, Diana Brickute, Graham Smith, Erik Årstad, Louis Allott, Eric O Aboagye

Background: We previously reported the first-in-human evaluation of 3-[18F]-fluoro-2,2-dimethylpropionic acid ([18F]FPIA) for imaging aberrant lipid metabolism and cancer detection. The first-generation semi-automated radiosynthesis of [18F]FPIA required HPLC purification to provide injection solution devoid of precursor (methyl 2,2-dimethyl-3-[(4-methylbenzenesulfonyl)oxy]propanoate), radioactive intermediate (methyl-3-([18F]fluoro)-2,2-dimethylpropanoate), and potential chemical impurities (tosic acid, 3-hydroxy-2,2-dimethylpropanoic acid and unlabelled FPIA). In readiness for global use of [18F]FPIA, we report a significant improvement to the GMP production through development of a fully-automated solid-phase extraction (SPE) purification method.

Results: We developed a fully-automated SPE purified radiosynthesis on FASTLab™ for GMP readiness that was translated to and validated on the Trasis AIO™ platform for routine clinical use. Purification of the radiotracer by SPE on both systems was achieved (> 98% radiochemical purity), increasing the radiochemical yield compared to the HPLC-based purification method. Non-decay-corrected radiochemical yields (RCY, n.d.c) were 30.3 ± 2.3% (n = 8) and 25.8 ± 6.6% (n = 46) on GE FASTlab™ and Trasis AIO™, respectively. Non-radioactive FPIA and other analytes determined by HPLC were below the limit of detection (< 1.0 µg/mL) from GE FASTlab™ and ≤ 1.2 µg/mL from Trasis AIO™.

Conclusions: The synthesis of [18F]FPIA was validated on the Trasis AIO™ platform for GMP production and is currently used to produce clinical doses for phase II clinical trials. Readiness for GMP validation was also demonstrated on GE FASTlab™ and can be adopted on other automated platforms.

背景:我们之前报道了3-[18F]-氟-2,2-二甲基丙酸([18F]FPIA)在异常脂质代谢成像和癌症检测中的首次人体评价。第一代半自动化放射合成[18F]FPIA需要HPLC纯化,以提供不含前体(2,2-二甲基-3-[(4-甲基苯磺酰基)氧]丙酸甲酯)、放射性中间体(甲基-3-([18F]氟)-2,2-二甲基丙酸甲酯)和潜在化学杂质(有毒酸、3-羟基-2,2-二甲基丙酸和未标记的FPIA)的注射溶液。为了准备在全球范围内使用[18F]FPIA,我们报告了通过开发全自动固相萃取(SPE)纯化方法对GMP生产的重大改进。结果:我们在FASTLab™上开发了一种全自动SPE纯化放射合成方法,用于GMP准备,并在Trasis AIO™平台上进行了翻译和验证,用于常规临床应用。在两种体系上都实现了SPE对放射性示踪剂的纯化(放射化学纯度为98%),与基于高效液相色谱的纯化方法相比,提高了放射化学收率。GE FASTlab™和Trasis AIO™的非衰变校正放射化学产率(RCY, n.d.c)分别为30.3±2.3% (n = 8)和25.8±6.6% (n = 46)。结论:[18F]FPIA的合成在Trasis AIO™平台上得到了GMP生产的验证,目前用于生产II期临床试验的临床剂量。在GE FASTlab™上也验证了GMP验证的准备性,并且可以在其他自动化平台上采用。
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引用次数: 0
Correction: Causal Networks to Inform Decisions for Ecological Restoration. 修正:为生态恢复决策提供信息的因果网络。
IF 3 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2026-03-21 DOI: 10.1007/s00267-026-02411-6
Christopher J Kotalik, Freya E Rowland, Bruce G Marcot, Kristin E Skrabis, David M Walters, Jo Ellen Hinck, William H Clements, Eric E Richer, John P Isanhart
{"title":"Correction: Causal Networks to Inform Decisions for Ecological Restoration.","authors":"Christopher J Kotalik, Freya E Rowland, Bruce G Marcot, Kristin E Skrabis, David M Walters, Jo Ellen Hinck, William H Clements, Eric E Richer, John P Isanhart","doi":"10.1007/s00267-026-02411-6","DOIUrl":"10.1007/s00267-026-02411-6","url":null,"abstract":"","PeriodicalId":543,"journal":{"name":"Environmental Management","volume":"76 4","pages":""},"PeriodicalIF":3.0,"publicationDate":"2026-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13005868/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147493284","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Atomic structure of β″ precipitates in high-Si containing Al-Si-Mg alloy. 高硅Al-Si-Mg合金中β″析出相的原子结构。
Q3 Immunology and Microbiology Pub Date : 2026-03-21 DOI: 10.1186/s42649-026-00128-8
Saif Haider Kayani, Sang-Ik Lee, Yoon-Ho Lee, Jung-Moo Lee, Kwangjun Euh, Young-Hee Cho
{"title":"Atomic structure of β″ precipitates in high-Si containing Al-Si-Mg alloy.","authors":"Saif Haider Kayani, Sang-Ik Lee, Yoon-Ho Lee, Jung-Moo Lee, Kwangjun Euh, Young-Hee Cho","doi":"10.1186/s42649-026-00128-8","DOIUrl":"10.1186/s42649-026-00128-8","url":null,"abstract":"","PeriodicalId":470,"journal":{"name":"Applied Microscopy","volume":"56 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2026-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13005791/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147493304","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Biological activity of isomalabaricane compounds from the marine sponge Rhabdastrella globostellata. 海绵体中异马拉巴拉烷类化合物的生物活性研究。
IF 2.5 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2026-03-21 DOI: 10.1007/s11418-026-02030-9
Ekaterina A Yurchenko, Anastasia B Kozhushnaya, Sophia A Kolesnikova, Ekaterina A Chingizova, Ekaterina S Menchinskaya, Evgeny A Pislyagin, Aleksandra S Kuzmich, Dmitry L Aminin
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引用次数: 0
An optimized and integrated robust tool for pangenome generation. 一个优化和集成的强大的泛基因组生成工具。
IF 3.1 4区 生物学 Q1 GENETICS & HEREDITY Pub Date : 2026-03-21 DOI: 10.1007/s10142-026-01847-7
Sherwyn Braganza, Tanvi Govil, Dipayan Samanta, Randy Hoover, David Salem, Rajesh Sani
{"title":"An optimized and integrated robust tool for pangenome generation.","authors":"Sherwyn Braganza, Tanvi Govil, Dipayan Samanta, Randy Hoover, David Salem, Rajesh Sani","doi":"10.1007/s10142-026-01847-7","DOIUrl":"https://doi.org/10.1007/s10142-026-01847-7","url":null,"abstract":"","PeriodicalId":574,"journal":{"name":"Functional & Integrative Genomics","volume":"26 1","pages":""},"PeriodicalIF":3.1,"publicationDate":"2026-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147490463","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive Analysis of the Roles of the CCDC Protein Family Play in a Range of 58 Disease Processes. CCDC蛋白家族在58种疾病过程中作用的综合分析
IF 3.3 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-03-21 DOI: 10.1007/s12010-026-05655-4
Shuyao Jiang, Pengfei Leng, Ya Li, Lifan Song, Xiaohui Xu, Lina Yang
{"title":"Comprehensive Analysis of the Roles of the CCDC Protein Family Play in a Range of 58 Disease Processes.","authors":"Shuyao Jiang, Pengfei Leng, Ya Li, Lifan Song, Xiaohui Xu, Lina Yang","doi":"10.1007/s12010-026-05655-4","DOIUrl":"https://doi.org/10.1007/s12010-026-05655-4","url":null,"abstract":"","PeriodicalId":465,"journal":{"name":"Applied Biochemistry and Biotechnology","volume":" ","pages":""},"PeriodicalIF":3.3,"publicationDate":"2026-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147493270","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Biogenic Synthesis of Silver Nanoparticles from Rhazya Stricta Leaf Extract: Characterization and Free Radical Scavenging Activity. 竹叶提取物生物合成纳米银的研究:表征及自由基清除活性。
IF 3.3 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-03-21 DOI: 10.1007/s12010-026-05653-6
Hafiz Muhammad Sheraz, Asif Ameen, Abhinav Kumar, Muhammad Zahid Shafiq, Dhouha Choukaier, Adel Noubigh, Wajeehah Shahid, Ankit Dilipkumar Oza
{"title":"Biogenic Synthesis of Silver Nanoparticles from Rhazya Stricta Leaf Extract: Characterization and Free Radical Scavenging Activity.","authors":"Hafiz Muhammad Sheraz, Asif Ameen, Abhinav Kumar, Muhammad Zahid Shafiq, Dhouha Choukaier, Adel Noubigh, Wajeehah Shahid, Ankit Dilipkumar Oza","doi":"10.1007/s12010-026-05653-6","DOIUrl":"https://doi.org/10.1007/s12010-026-05653-6","url":null,"abstract":"","PeriodicalId":465,"journal":{"name":"Applied Biochemistry and Biotechnology","volume":" ","pages":""},"PeriodicalIF":3.3,"publicationDate":"2026-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147493291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ground truthing national multiscale landscape indices with nitrogen-stable isotopes for low-gradient coastal stream ecosystems. 低梯度海岸河流生态系统氮稳定同位素地面反演全国多尺度景观指数
IF 3 4区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2026-03-21 DOI: 10.1007/s10661-026-15185-5
Anne Kuhn, Morgan Schwartz, Jonathan Serbst, James Lake, Laura Coiro, Michael Charpentier

Low-gradient coastal stream systems support important landscape level ecological functions by connecting uplands and marshes directly to large tidal rivers, estuaries, and coastal waterbodies. In this study, we develop and evaluate innovative monitoring and assessment methods to support biological indicator development for waterbody types and taxa that lack nationally consistent and reliable approaches. Low-gradient tidal and non-tidal coastal stream systems are infrequently included in national and regional monitoring programs and may require different methods than freshwater streams (US EPA National Rivers and Streams Assessment) or large tidal rivers (US EPA National Coastal Condition Assessment). Results from this study demonstrate that stable isotopes of nitrogen (δ15N) bioindicators from a variety of biotic trophic levels can be used as an efficient and effective rapid monitoring tool for screening level assessment of biotic condition in low-gradient coastal systems. These stable isotope indicators also provide empirical field measurements for ground-truthing national indices which are derived from remotely sensed national landscape data layers. The δ15N biotic responses were consistently significant across all trophic levels and negatively correlated with landscape level stressor exposure conditions reflected in the national and regional scale indices. Verifying national multiscale indices with site-scale field measured bioindicators (δ15N) provides coastal managers, states, tribal, regional, and local watershed organizations confidence in using these national indices at local watershed and catchment scales for identifying and prioritizing protection of healthy coastal stream networks and watersheds, as well as targeting critical functional elements of watersheds for restoration efforts.

低梯度沿海河流系统通过将高地和沼泽直接连接到大型潮汐河流、河口和沿海水体,支持重要的景观级生态功能。在本研究中,我们开发和评估了创新的监测和评估方法,以支持缺乏全国统一和可靠方法的水体类型和分类群的生物指标开发。低梯度潮汐和非潮汐海岸河流系统很少被纳入国家和区域监测计划,可能需要不同于淡水河流(美国环保署国家河流和溪流评估)或大型潮汐河流(美国环保署国家海岸状况评估)的方法。本研究结果表明,不同生物营养水平的氮稳定同位素(δ15N)生物指标可作为低梯度海岸系统生物状况筛选水平评估的快速监测工具。这些稳定同位素指标也为遥感国家景观数据层反演的地面真实国家指数提供了经验野外测量。δ15N生物响应在各营养水平上均呈显著性变化,且与景观水平应激暴露条件呈负相关。用现场测量的生物指标(δ15N)验证国家多尺度指数,为沿海管理者、各州、部落、地区和当地流域组织提供了信心,使他们能够在当地流域和集水区尺度上使用这些国家指数,以确定和优先保护健康的沿海河流网络和流域,并针对流域的关键功能要素进行恢复工作。
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引用次数: 0
Quantum mechanical justification for induced fit model conformational changes in allosteric enzymes based on the quantum perturbation theory and Davydov's soliton theory. 基于量子微扰理论和Davydov孤子理论的变构酶诱导拟合模型构象变化的量子力学论证。
IF 2.2 4区 生物学 Q3 BIOPHYSICS Pub Date : 2026-03-21 DOI: 10.1007/s10867-026-09707-y
Farzam Faeznia

We develop a refined quantum framework for the induced-fit model of allosteric enzymes incorporating vibrational exciton (Davydov's soliton) dynamics and open-system perturbation theory. Using realistic biochemical parameters, we numerically evaluate the excitation conditions and find that under normal assumptions the quantum excitation energy remains orders of magnitude below the threshold needed to drive a stable soliton. This implies that classical Davydov conditions alone are insufficient for enzyme catalysis on sub-nanosecond timescales. To address this, we identify additional factors - multi-state energy accumulation and strong quantum-coherent processes - that could plausibly enhance the effect. We discuss model limitations (e.g., idealized 1D protein chain, neglect of dissipation) and the validity of our assumptions. By modeling allosteric enzymes as quantum multi-particle systems, we represent substrate-induced structural changes as Hamiltonian deformations and calculate transition probabilities and interaction energies that correlate with enzymatic accuracy or error. While Davydov's soliton offers an appealing formalism, our calculations indicate they are insufficient under naïve parameter choices. Under standard parameters, this mechanism alone is not sufficient and requires auxiliary mechanisms. We present conditions (e.g., multi-state accumulation, enhanced coupling) under which solitonic behaviour might emerge, and propose experiments/simulations to validate these scenarios. This work bridges biophysical mechanisms with quantum mechanics, offering a novel perspective on enzymatic function at the quantum level. Finally, we situate our model within the broader context of macro-quantum effects (quantum coherence, tunneling, superradiance) known in biology, arguing that while Davydov's soliton remains speculative, related quantum phenomena (e.g., proton tunneling) are well-supported in enzymatic systems.

结合振动激子(Davydov孤子)动力学和开系统摄动理论,我们为变构酶的诱导拟合模型建立了一个精细的量子框架。利用现实的生化参数,我们对激发条件进行了数值评估,并发现在正常假设下,量子激发能仍然低于驱动稳定孤子所需的阈值。这意味着在亚纳秒的时间尺度上,仅经典的达维多夫条件是不够的。为了解决这个问题,我们确定了额外的因素——多态能量积累和强量子相干过程——可能会增强这种效应。我们讨论了模型的局限性(例如,理想化的一维蛋白链,忽略耗散)和我们假设的有效性。通过将变构酶建模为量子多粒子系统,我们将底物诱导的结构变化表示为哈密顿变形,并计算与酶的精度或误差相关的跃迁概率和相互作用能。虽然Davydov孤子提供了一个吸引人的形式,但我们的计算表明它们在naïve参数选择下是不够的。在标准参数下,单靠这一机制是不够的,需要辅助机制。我们提出了可能出现孤子行为的条件(例如,多态积累,增强耦合),并提出了实验/模拟来验证这些场景。这项工作将生物物理机制与量子力学联系起来,在量子水平上为酶的功能提供了一个新的视角。最后,我们将我们的模型放在生物学中已知的宏观量子效应(量子相干性、隧道效应、超辐射)的更广泛背景下,认为虽然达维多夫孤子仍然是推测性的,但相关的量子现象(例如质子隧道效应)在酶系统中得到了很好的支持。
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