Cratonic lithospheres carry a long history of tectonic modifications that result in heterogeneous structures, as revealed by an increasing number of geophysical observations. The existence of cratonic basins indicates protracted periods of tectonic modification, causing subsidence within global continental interiors. An enigmatic aspect of this process is the cessation of subsidence in cratonic basins with unclear mechanisms. Here, using full-wave ambient noise tomography, we reveal distinct seismic low-velocity anomalies below 60 km beneath the Illinois and Michigan Basins, where subsidence terminated in the late Paleozoic to the early Mesozoic. These low-velocity volumes, surrounded by distinctly higher velocities, are attributed to asthenospheric materials upwelling to shallow mantle depths during lithospheric foundering or delamination. This lithospheric modification may be associated with a major regional tectonic exhumation in the early Mesozoic that could have terminated basin subsidence and unroofed upper portions of basin stratigraphy. This timing coincides with the passage of this region over mantle plumes, which likely triggered lithospheric delamination and asthenospheric upwelling. Geodynamic modeling shows that the emplacement of these buoyant asthenospheric materials would lead to an uplift of about 3.5 km, sufficient to terminate the subsidence in the cratonic basins within this region. These findings document evidence of lithospheric delamination in the North American midcontinent and present important links between geodynamic drivers and geological records of the evolution of the cratonic lithosphere in North America and beyond. They also offer broader implications for understanding how deep Earth processes shape surface environments, influencing resource distribution and long-term landscape evolution.