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Identification of three robust and efficient Saccharomyces cerevisiae strains isolated from Brazilian's cachaça distilleries 巴西cachaa酒厂分离的三株强健高效酿酒酵母的鉴定
Pub Date : 2018-01-01 DOI: 10.1016/J.BIORI.2018.07.001
Raquel de Sousa Paredes, I. P. V. Vieira, Vinicius Mattos de Mello, L. Vilela, R. Schwan, E. Eleutherio
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引用次数: 7
Optimized biodegradation of carcinogenic fungicide Carbendazim by Bacillus licheniformis JTC-3 from agro-effluent 地衣芽孢杆菌JTC-3对农业废水中致癌性杀菌剂多菌灵的优化降解
Pub Date : 2017-11-01 DOI: 10.1016/J.BIORI.2017.10.004
J. Panda, Tiyasha Kanjilal, S. Das
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引用次数: 21
Preparation of silver nanoparticles by Garcinia mangostana stem extract and investigation of the antimicrobial properties 山竹藤茎提取物制备纳米银及其抗菌性能研究
Pub Date : 2017-11-01 DOI: 10.1016/J.BIORI.2017.11.001
P. Karthiga
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引用次数: 42
Recent developments and innovations in solid state fermentation 固态发酵的最新发展和创新
Pub Date : 2017-01-01 DOI: 10.1016/j.biori.2017.01.002
Carlos Ricardo Soccol, Eduardo Scopel Ferreira da Costa, Luiz Alberto Junior Letti, Susan Grace Karp, Adenise Lorenci Woiciechowski, Luciana Porto de Souza Vandenberghe

After forty years of research development, an overview of solid-state fermentation (SSF), focusing on its applications, mainly of the very recent papers of the last five years, is presented. This review comprises the most important developed processes concerning the production of enzymes, biopulping processes, and traditional processes, for food fermentation, such as the production of Chinese daqu and koji, and industrial important biomolecules such as organic acids, pigments, phenolic compounds, aromas and biosorbents. SSF bioreactors design that has been developed is reported, so as the solutions for the classical drawbacks and the most important cases of successful employment of the technique are described. And, finally, it is summarized a very interesting report of patents and innovations regarding SSF products and processes.

经过四十年的研究发展,对固态发酵(SSF)进行了概述,重点介绍了其应用,主要介绍了近五年来的最新论文。本文综述了酶的生产、生物制浆工艺和食品发酵的传统工艺,如大曲和曲的生产,以及工业上重要的生物分子,如有机酸、色素、酚类化合物、芳香剂和生物吸附剂等。介绍了已开发的SSF生物反应器的设计,并对经典缺陷的解决方案和该技术成功应用的最重要案例进行了描述。最后,总结了一份关于SSF产品和工艺的专利和创新的非常有趣的报告。
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引用次数: 333
Knocking down chitin synthase 2 by RNAi is lethal to the cotton boll weevil 用RNAi敲除几丁质合成酶2对棉铃象鼻虫是致命的
Pub Date : 2017-01-01 DOI: 10.1016/j.biori.2017.04.001
L.L.P. Macedo , J.D. Antonino de Souza Junior , R.R. Coelho , F.C.A. Fonseca , A.A.P. Firmino , M.C.M. Silva , R.R. Fragoso , E.V.S. Albuquerque , M.S. Silva , J. de Almeida Engler , W.R. Terra , M.F. Grossi-de-Sa

The cotton boll weevil (Anthonomus grandis) is the most destructive cotton insect pest in Brazil. The endophytic habit of this insect makes difficult its chemical control. Chitin synthase (CHS) is an integral membrane glycosyltransferase that is essential for chitin chain polymerization and deposition in insect chitinous structures, such as the peritrophic membrane (PM). Because it is not present in plants or vertebrates, CHS can be considered a promising target for eco-friendly biotechnological approaches, such as RNA interference (RNAi)-mediated gene silencing. Considering the relevance of CHS genes in the chitin biosynthetic pathway in insects, we report here the molecular cloning of the full-length CHS2 cDNA from the cotton boll weevil, and its functional validation via RNAi. The AgraCHS2 cDNA sequence is 4,869 bp, with a 4,446 bp open reading frame that encodes a predicted protein with 1,482 amino acid residues. Predicted protein has high similarity (53 to 78%) with other insects CHS. Moreover, only one copy is present in A. grandis genome. Transcriptional analysis showed that AgraCHS2 transcripts are restricted to the insect midgut at the third-larval instar and adult stages, which are considered the main feeding stages. RNAi-mediated knockdown of the AgraCHS2 affected A. grandis development, resulting in oviposition reduction of 93% and leading to 100% adult mortality. These data, in addition to the observation of PM severe disorganization in the midgut after AgraCHS2 knock-down, suggest AgraCHS2 as a promising target for developing RNAi-based biotechnological alternatives to specifically control the cotton boll weevil.

棉铃象鼻虫(Anthonomus grandis)是巴西最具破坏性的棉花害虫。这种昆虫的内生习性使其化学防治变得困难。几丁质合成酶(CHS)是一种完整的膜糖基转移酶,是昆虫几丁质结构(如周营养膜(PM))中几丁质链聚合和沉积所必需的。因为它不存在于植物或脊椎动物中,CHS可以被认为是生态友好型生物技术方法的一个有希望的靶标,例如RNA干扰(RNAi)介导的基因沉默。考虑到CHS基因在昆虫几丁质生物合成途径中的相关性,我们报道了棉铃虫CHS2全长cDNA的分子克隆,并通过RNAi对其功能进行了验证。AgraCHS2 cDNA序列长4869 bp,开放阅读框长4446 bp,可编码含有1482个氨基酸残基的预测蛋白。预测的蛋白质与其他昆虫CHS具有较高的相似性(53 ~ 78%)。此外,只有一个拷贝存在于大田鸡的基因组中。转录分析表明,agachs2转录本仅局限于昆虫中肠的第三幼虫期和成虫期,这两个阶段被认为是主要的取食期。rnai介导的agachs2基因敲低会影响大田鼠的发育,导致产卵减少93%,成虫死亡率100%。这些数据,以及在agachs2敲除后棉铃虫中肠中PM严重紊乱的观察,表明agachs2是开发基于rnai的生物技术替代品来特异性控制棉铃象甲的一个有希望的靶点。
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引用次数: 30
Pharmacophore modeling and 3D QSAR studies for prediction of matrix metalloproteinases inhibitory activity of hydroxamate derivatives 药效团模型和3D QSAR研究预测基质金属蛋白酶的抑制活性羟基甲酸酯衍生物
Pub Date : 2017-01-01 DOI: 10.1016/j.biori.2017.10.002
Dharmender Rathee , Viney Lather , Harish Dureja

In order to develop potent inhibitors of matrix metalloproteinase (MMP-2 and MMP-9) as anticancer agents, pharmacophore modeling and three-dimensional quantitative structure–activity relationship (3D-QSAR) models were established using PHASE 3.0. A pharmacophore 5-point (AAARR) model was developed for the studied dataset and the generated model was used to derive the predictive atom-based 3D-QSAR models. After identifying a valid hypothesis, we developed 3D-QSAR models applying the PLS algorithm. The selected 3D-QSAR models were suggestive of the vitality of the electron-withdrawing feature for the MMPs inhibitory potential. In addition, hydrophobic groups, hydrogen bond donor groups, positive ionic and negative ionic features also positively contributed to the MMPs inhibitory potential along with the electron-withdrawing feature. The developed models were statistically robust (MMP-2 Q2 = 0.51; pred R2 = 0.67; MMP-9 Q2 = 0.59; pred R2 = 0.77). The QSAR results help in identifying a relationship between structural features of hydroxamate derivatives and their activities which could be useful to design newer MMP inhibitors.

为了开发有效的基质金属蛋白酶抑制剂(MMP-2和MMP-9)作为抗癌药物,利用PHASE 3.0建立药效团模型和三维定量构效关系(3D-QSAR)模型。针对所研究的数据集建立了药效团5点(AAARR)模型,并使用生成的模型推导基于原子的预测3D-QSAR模型。在确定了一个有效的假设后,我们应用PLS算法开发了3D-QSAR模型。所选择的3D-QSAR模型提示了MMPs抑制电位的吸电子特征的活力。此外,疏水基团、氢键给体基团、正离子和负离子特征以及吸电子特征也对MMPs的抑制电位有正贡献。所建立的模型具有统计学稳健性(MMP-2 Q2 = 0.51;pred R2 = 0.67;Mmp-9 q2 = 0.59;pred R2 = 0.77)。QSAR结果有助于确定羟基甲酸酯衍生物的结构特征与其活性之间的关系,这可能有助于设计新的MMP抑制剂。
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引用次数: 12
The development of veterinary vaccines: a review of traditional methods and modern biotechnology approaches 兽医疫苗的发展:传统方法和现代生物技术方法的综述
Pub Date : 2017-01-01 DOI: 10.1016/j.biori.2017.10.001
Sérgio Jorge, Odir Antônio Dellagostin

The immunization of animals has been carried out for centuries and is generally accepted as the most cost-effective and sustainable method of controlling infectious veterinary diseases. Up to twenty years ago, most veterinary vaccines were either inactivated organisms that were formulated with an oil-based adjuvant or live attenuated vaccines. In many cases, these formulations were not very effective. The discovery of antigen/gene delivery systems has facilitated the development of novel prophylactic and therapeutic veterinary vaccines. To identify vaccine candidates in genomic sequences, a revolutionary approach was established that stems from the assumption that antibodies are more readily able to access surface and secreted than cytoplasm proteins; as such, they represent ideal vaccine candidates. The approach, which is known as reverse vaccinology, uses several bioinformatics algorithms to predict antigen localization and it has been successfully applied to immunize against many veterinary diseases. This review examines some of the main topics that have emerged in the veterinary vaccine field with the use of modern biotechnology techniques.

动物免疫接种已经进行了几个世纪,并被普遍认为是控制传染性兽医疾病的最具成本效益和可持续的方法。直到20年前,大多数兽医疫苗要么是用油基佐剂配制的灭活生物体,要么是减毒活疫苗。在许多情况下,这些配方不是很有效。抗原/基因传递系统的发现促进了新型预防性和治疗性兽医疫苗的发展。为了在基因组序列中确定候选疫苗,建立了一种革命性的方法,该方法源于抗体比细胞质蛋白更容易接近表面和分泌的假设;因此,它们是理想的候选疫苗。这种方法被称为反向疫苗学,它使用几种生物信息学算法来预测抗原定位,并已成功地应用于许多兽医疾病的免疫。本文综述了利用现代生物技术在兽医疫苗领域出现的一些主要问题。
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引用次数: 62
Molecular mechanisms of biomass increase in plants 植物生物量增加的分子机制
Pub Date : 2017-01-01 DOI: 10.1016/j.biori.2017.08.001
Marcelo de Freitas Lima , Nubia Barbosa Eloy , João Antonio Batista de Siqueira , Dirk Inzé , Adriana Silva Hemerly , Paulo Cavalcanti Gomes Ferreira

Biomass consumption continues to increase worldwide for the provision of human energy needs. These high pressures for energy will determine the demand for crop plants as a resource for biofuel, heat and electricity. Thus, the search for plant traits associated with genetic increases in yield is unconditional. Here, we propose exploiting recent advances in plant biomass enhancement in non-crop as well as in crop plants. For this purpose, biotechnological approaches that are well known rapid ways of enhancing the plant traits, as well as the traditional way of improving plants through plant breeding selecting for desirable phenotypes are excellent techniques to improve plant biomass and reduce the dependence on fossil fuels. Obviously, many genes can be associated with promising phenotypes however this review will focus on genes selected from different plant networks.

为满足人类的能源需求,世界范围内的生物质消费继续增加。这些对能源的高压将决定对农作物作为生物燃料、热能和电力资源的需求。因此,寻找与产量遗传增加有关的植物性状是无条件的。在此,我们建议利用近年来在非作物和作物植物中增加植物生物量的研究进展。为此,生物技术方法是众所周知的快速增强植物性状的方法,以及通过植物育种选择理想表型来改善植物的传统方法是提高植物生物量和减少对化石燃料依赖的优秀技术。显然,许多基因可能与有希望的表型相关,但本文将重点介绍从不同植物网络中选择的基因。
{"title":"Molecular mechanisms of biomass increase in plants","authors":"Marcelo de Freitas Lima ,&nbsp;Nubia Barbosa Eloy ,&nbsp;João Antonio Batista de Siqueira ,&nbsp;Dirk Inzé ,&nbsp;Adriana Silva Hemerly ,&nbsp;Paulo Cavalcanti Gomes Ferreira","doi":"10.1016/j.biori.2017.08.001","DOIUrl":"10.1016/j.biori.2017.08.001","url":null,"abstract":"<div><p>Biomass consumption continues to increase worldwide for the provision of human energy needs. These high pressures for energy will determine the demand for crop plants as a resource for biofuel, heat and electricity. Thus, the search for plant traits associated with genetic increases in yield is unconditional. Here, we propose exploiting recent advances in plant biomass enhancement in non-crop as well as in crop plants. For this purpose, biotechnological approaches that are well known rapid ways of enhancing the plant traits, as well as the traditional way of improving plants through plant breeding selecting for desirable phenotypes are excellent techniques to improve plant biomass and reduce the dependence on fossil fuels. Obviously, many genes can be associated with promising phenotypes however this review will focus on genes selected from different plant networks.</p></div>","PeriodicalId":100187,"journal":{"name":"Biotechnology Research and Innovation","volume":"1 1","pages":"Pages 14-25"},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.biori.2017.08.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"84321041","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 34
Alkaline phosphatase activity of a phosphate solubilizing Alcaligenes faecalis, isolated from Mangrove soil 从红树林土壤中分离出的可溶解磷酸盐的粪碱性碱性磷酸酶活性
Pub Date : 2017-01-01 DOI: 10.1016/j.biori.2017.01.003
Bikash Chandra Behera , Himendra Yadav , Santosh Kumar Singh , Bijay Kumar Sethi , Rashmi Ranjan Mishra , Sony Kumari , Hrudayanath Thatoi

Microorganisms are capable of converting insoluble phosphate into a bioavailable form through solubilization and mineralization processes. Hence in the present study a phosphate solubilizing bacterium, PSB-26, was isolated from mangrove of the Mahanadi delta using NBRIP-agar and NBRIP-BPB broth containing tricalcium phosphate as the phosphate source. Based on phenotypic and molecular characterization, the strain was identified as Alcaligenes faecalis. The maximum phosphate solubilizing activity of the strain was found to be 48 μg/ml with decrease in pH of the growth medium from 7.0 to 3.2. During phosphate solubilization, various organic acids, such as oxalic acid (289 mg/L), citric acid (0.2 mg/L), malic acid (0.3 mg/L), succinic acid (0.5 mg/L) and acetic acid (0.4 mg/L) produced in the broth culture were detected through HPLC analysis. Crude alkaline phosphatase activity of the strain was determined by p-nitrophenyl phosphate assay and optimized with different growth parameters to obtain maximum enzyme production. Under optimized sets of conditions, maximum alkaline phosphatase activity of 93.7 U/ml was observed. Partially purified alkaline phosphatase exhibited three protein bands of sizes approximately 45 kDa, 25 kDa and 17 kDa. Partially purified alkaline phosphatase during characterization showed maximum activity at pH 9.0 (96.53 U/ml), temperature of 45 °C (97.99 U/ml) and substrate concentration of 1.75 mg/ml (96.51 U/ml). The effect of the bacterium on growth of Arabidopsis thaliana plant showed that inoculation of bacterial culture exhibited better growth in comparison to the control. Hence the phosphate solubilizing and alkaline phosphatase production activity of the bacterium may have probable use for future biotechnological application.

微生物能够通过增溶和矿化过程将不溶性磷酸盐转化为生物可利用的形式。因此,本研究以nbrip -琼脂和含有磷酸三钙的NBRIP-BPB肉汤为磷酸盐源,从Mahanadi三角洲的红树林中分离出一种磷酸盐增溶菌PSB-26。根据表型和分子特征鉴定,该菌株为粪Alcaligenes faecalis。随着培养基pH由7.0降至3.2,菌株的最大增磷活性为48 μg/ml。在磷酸盐增溶过程中,通过高效液相色谱法检测了肉汤培养中产生的草酸(289 mg/L)、柠檬酸(0.2 mg/L)、苹果酸(0.3 mg/L)、琥珀酸(0.5 mg/L)、乙酸(0.4 mg/L)等多种有机酸。采用对硝基苯磷酸法测定菌株粗碱性磷酸酶活性,并对不同的生长参数进行优化,以获得最大产酶量。在优化条件下,碱性磷酸酶活性最高可达93.7 U/ml。部分纯化的碱性磷酸酶显示出大约45 kDa、25 kDa和17 kDa的三个蛋白带。部分纯化的碱性磷酸酶在pH为9.0 (96.53 U/ml)、温度为45℃(97.99 U/ml)、底物浓度为1.75 mg/ml (96.51 U/ml)时活性最高。细菌对拟南芥植株生长的影响表明,接种细菌培养物比对照表现出更好的生长。因此,该细菌的磷酸盐溶解和碱性磷酸酶生产活性可能在未来的生物技术应用中具有潜在的应用价值。
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引用次数: 51
Prospection and identification of nematotoxic compounds from Canavalia ensiformis seeds effective in the control of the root knot nematode Meloidogyne incognita 对根结线虫防治有效的菜豆种子中线虫毒化合物的筛选与鉴定
Pub Date : 2017-01-01 DOI: 10.1016/j.biori.2017.10.003
Thales L. Rocha , Carla Becker Soll , Berin A. Boughton , Tiago S. Silva , Klaus Oldach , Alexandre A.P. Firmino , Damien L. Callahan , John Sheedy , Edilberto R. Silveira , Regina M.D.G. Carneiro , Luciano P. Silva , Vera L.P. Polez , Patrícia B. Pelegrini , Antony Bacic , Maria F. Grossi-de-Sa , Ute Roessner

Meloidogyne incognita is responsible for significant crop losses worldwide. The main strategy to control this phytopathogen is still based on synthetic nematicides that are harmful to human health and the environment. In this context, aqueous seed extracts of antagonistic plants were screened for molecules effective toward the infective stage (J2) of M. incognita. The aqueous crude extract of Canavalia ensiformis (ACECe) showed the highest nematicidal activity (87 ± 3% mortality). ACECe dialysis fractionation allowed the collection of an external dialysate (EDCe) containing molecules smaller than 3.5 kDa effective against J2 (96 ± 3.0% mortality); innocuous toward non targeted organisms as saprophytic nematodes, fungi, bacterium and insects larvae; active against J2 (96 ± 2% mortality) after heating (50 °C); no cytotoxic for bovine red blood cells; reduction of M. incognita eggs masses by 82.5% in tomato plants at green house conditions. Fractionation of the EDCe by reversed-phase high-performance liquid chromatography (RP-HPLC) separated five nematotoxic fractions. Analyses of those fractions based on gas chromatography–mass spectrometry (GC–MS), liquid chromatography–mass spectrometry (LCMS) and nuclear magnetic resonance (NMR) identified nine specific metabolites, follow-up testing of the individual authentic standards of each metabolite as the compounds: d-glucose, l-canavanine, xanthotoxin, cis-aconitic acid, trans-aconitic acid, malic acid, citric acid, palmitic acid and S-carboxymethylcysteine; all them confirmed to possess nematotoxic properties. However, some of those metabolites were not described previously demonstrating biological action against M. incognita.

在世界范围内,隐根曲线虫是造成重大作物损失的原因。控制这种植物病原体的主要策略仍然是基于对人类健康和环境有害的合成杀线虫剂。在此背景下,对拮抗植物的种子水提物进行了筛选,以寻找对M. incognita侵染期(J2)有效的分子。Canavalia ensiformis (ACECe)水提物的杀线虫活性最高,死亡率为87±3%。ACECe透析分离允许收集含有小于3.5 kDa分子的外部透析液(EDCe),对J2有效(96±3.0%死亡率);对腐生线虫、真菌、细菌、昆虫幼虫等非目标生物无害;加热(50℃)后对J2有活性(96±2%死亡率);对牛红细胞无细胞毒性;在温室条件下,使番茄植株上的黑斑夜蛾虫卵减少82.5%。用反相高效液相色谱(RP-HPLC)对EDCe进行分离,分离出5个线虫毒性组分。通过气相色谱-质谱联用(GC-MS)、液相色谱-质谱联用(LCMS)和核磁共振(NMR)对这些组分进行分析,鉴定出9种特定代谢物,并对每种代谢物的单独标准品进行后续检测,分别为:d-葡萄糖、l-芥烷氨酸、黄毒素、顺式乌头酸、反式乌头酸、苹果酸、柠檬酸、棕榈酸和s-羧甲基半胱氨酸;它们都被证实具有线虫毒性。然而,其中一些代谢物在以前没有被描述过,显示出对M. incognita的生物作用。
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引用次数: 17
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Biotechnology Research and Innovation
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