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CHAPTER 3. Catalysis by Networks of Cooperative Hydrogen Bonds 第三章。协同氢键网络的催化作用
Pub Date : 2019-03-04 DOI: 10.1039/9781788016490-00066
J. M. Saa, Victor J. Lillo, J. Mansilla
The main paradigm of today's chemistry is sustainability. In pursuing sustainability, we need to learn from chemical processes carried out by Nature and realize that Nature does not use either strong acids, or strong bases or fancy reagents to achieve outstanding chemical processes. Instead, enzyme activity leans on the cooperation of several chemical entities to avoid strong acids or bases or to achieve such an apparently simple goal as transferring a proton from an NuH unit to an E unit (NuH + E → Nu–EH). Hydrogen bond catalysis emerged strongly two decades ago in trying to imitate Nature and avoid metal catalysis. Now to mount another step in pursuing the goal of sustainability, the focus is upon cooperativity between the different players involved in catalysis. This chapter looks at the concept of cooperativity and, more specifically, (a) examines the role of cooperative hydrogen bonded arrays of the general type NuH⋯(NuH)n⋯NuH (i.e. intermolecular cooperativity) to facilitate general acid–base catalysis, not only in the solution phase but also under solvent-free and catalyst-free conditions, and, most important, (b) analyzes the capacity of designer chiral organocatalysts displaying intramolecular networks of cooperative hydrogen bonds (NCHBs) to facilitate enantioselective synthesis by bringing conformational rigidity to the catalyst in addition to simultaneously increasing the acidity of key hydrogen atoms so to achieve better complementarity in the highly polarized transition states.
当今化学的主要范式是可持续性。在追求可持续发展的过程中,我们需要学习大自然所进行的化学过程,并认识到大自然既不使用强酸,也不使用强碱或花哨的试剂来实现卓越的化学过程。相反,酶的活性依赖于几种化学实体的合作,以避免强酸或强碱,或实现这样一个看似简单的目标,如将质子从NuH单元转移到E单元(NuH + E→Nu-EH)。氢键催化在二十年前兴起,试图模仿自然,避免金属催化。现在,为了在追求可持续性的目标上再迈出一步,重点在于参与催化的不同参与者之间的合作。本章着眼于协同性的概念,更具体地说,(a)研究一般类型NuH⋯(NuH)n⋯NuH(即分子间协同性)的协同氢键阵列的作用,以促进一般酸碱催化,不仅在溶液中,而且在无溶剂和无催化剂的条件下,而且,最重要的是,(b)分析了设计手性有机催化剂的能力,这些设计手性有机催化剂显示出分子内的合作氢键网络(NCHBs),通过给催化剂带来构象刚性,同时增加关键氢原子的酸度,从而促进对映选择性合成,从而在高度极化的过渡态中实现更好的互补。
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引用次数: 1
CHAPTER 6. Onium Ion-assisted Organic Reactions Through Cation–π Interactions 第六章。通过阳离子-π相互作用的铵离子辅助有机反应
Pub Date : 2019-03-04 DOI: 10.1039/9781788016490-00137
S. Yamada
The cation–π interaction is an attractive noncovalent interaction between a cation and a π-face. Owing to the stronger interaction energy than those of the other π interactions, such as π–π and CH–π interactions, the cation–π interaction has recently been recognized as a new tool for controlling the regio- and stereoselectivities in various types of organic reactions. This chapter attempts to cover a variety of organic reactions assisted by interactions between unreactive onium ions and π-faces, which will provide comprehensive knowledge on the role of cation–π interactions in organic synthesis.
阳离子-π相互作用是阳离子和π面之间具有吸引力的非共价相互作用。由于阳离子- π相互作用比其他π相互作用(如π - π和CH - π)具有更强的相互作用能,阳离子- π相互作用最近被认为是控制各种类型有机反应的区域选择性和立体选择性的新工具。本章试图涵盖各种由非反应性离子和π面相互作用辅助的有机反应,这将提供有关阳离子-π相互作用在有机合成中的作用的全面知识。
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引用次数: 1
CHAPTER 29. Analysis of Reactivity from the Noncovalent Interactions Perspective 章29。从非共价相互作用的角度分析反应性
Pub Date : 2019-03-04 DOI: 10.1039/9781788016490-00628
R. Á. Boto, T. Woller, J. Contreras‐García, Israel Fernández
This chapter illustrates the good performance of the recently introduced noncovalent interactions (NCI) method in understanding molecular reactivity. This method is not only helpful in identifying the nature of the NCIs but can be also used to gain a deeper insight into the influence of such interactions on the outcome of different fundamental transformations in chemistry, including catalysed processes. To this end, representative catalysed transformations were selected where the NCI method was key to rationalizing different aspects such as reactivity trends and selectivity. The catalysed reactions chosen range from relatively simple transformations such as Diels–Alder cycloadditions to more intricate transition metal- and organo-catalysed processes.
本章说明了最近引入的非共价相互作用(NCI)方法在理解分子反应性方面的良好性能。这种方法不仅有助于确定ncci的性质,而且还可用于更深入地了解这种相互作用对化学中不同基本转化(包括催化过程)结果的影响。为此,选择了具有代表性的催化转化,其中NCI方法是使反应性趋势和选择性等不同方面合理化的关键。所选择的催化反应范围从相对简单的转化,如Diels-Alder环加成到更复杂的过渡金属和有机催化过程。
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引用次数: 0
CHAPTER 20. Cavity Effects in Metal–Organic Frameworks 第20章。金属-有机骨架中的空腔效应
Pub Date : 2019-03-04 DOI: 10.1039/9781788016490-00440
Víctor L. Rechac, Encarnación Peris Sanchis, F. X. L. I. Xamena
Metal–organic frameworks (MOFs) have attracted enormous interest in recent years owing to their potential use as heterogeneous catalysts. MOF catalysts can be designed with active sites at the metallic units or at the organic ligands or trapped inside their regular pore system. This chapter illustrates how cavity effects (i.e. the chemical environment in which the active sites are located) can have a large influence on their final catalytic properties through specific host–guest interactions, thereby introducing additional tools to modulate chemical specificity.
近年来,金属有机骨架(MOFs)因其作为多相催化剂的潜在用途而引起了人们的极大兴趣。MOF催化剂的活性位点可以设计在金属单元或有机配体上,或被困在其规则的孔隙系统中。本章阐述了空腔效应(即活性位点所在的化学环境)如何通过特定的主客体相互作用对其最终催化性能产生重大影响,从而引入了调节化学特异性的额外工具。
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引用次数: 1
CHAPTER 17. Ionic Liquid Effect in Catalysed Multicomponent Reactions 第十七章。催化多组分反应中的离子液体效应
Pub Date : 2019-03-04 DOI: 10.1039/9781788016490-00377
B. A. Neto, Haline G. O. Alvim, A. Lapis
In this book chapter the effects produced in using ionic liquids over multicomponent reactions are presented and discussed. Ionic liquids may be used as reaction media (solvents) or as catalysts for several multicomponent reactions. It is observed that many multicomponent reactions characteristically proceed through charged intermediates, thereby rendering them as desirable features to interact with cations and/or anions of ionic liquids. These interactions are mostly ruled by Coulombic attraction/stabilisation between the charged intermediates and the ionic liquid ions. These Coulombic interactions give rise to new ion pairs and larger supramolecular aggregates (higher ion clusters). Additional interactions such as hydrogen bonds and van der Waals forces also play a role in the formation, directionality (entropic drivers) and stabilisation of these ion pairs (and larger supramolecular clusters) between the charged intermediates and the ionic liquid ions; an effect typically noted for imidazolium derivatives. Understanding the multicomponent reaction mechanism in this context is essential in aiming at predicting a positive ionic liquid effect. Many multicomponent reactions have proven to be capable of undergoing two or more competitive reaction mechanisms, but usually the final multicomponent reaction adduct is the same regardless of the reaction pathway. Ionic liquids may also contribute to tune the reaction through one specific mechanism. As we intend to show herein, the combination of multicomponent reactions and ionic liquids typically returns excellent results and produces many achievements, although both are a huge challenge to understand and to predict their effects over multicomponent reactions.
在这本书的章节中,离子液体在多组分反应中产生的影响被提出和讨论。离子液体可用作反应介质(溶剂)或多种多组分反应的催化剂。可以观察到,许多多组分反应的特征是通过带电中间体进行,从而使它们成为与离子液体的阳离子和/或阴离子相互作用的理想特征。这些相互作用主要是带电中间体和离子液体离子之间的库仑吸引/稳定作用。这些库仑相互作用产生新的离子对和更大的超分子聚集体(更高的离子簇)。额外的相互作用,如氢键和范德华力,也在带电中间体和离子液体离子之间的这些离子对(以及更大的超分子簇)的形成、方向性(熵驱动因素)和稳定性中发挥作用;咪唑类衍生物的典型效应。在这种情况下,了解多组分反应机理对于预测正离子液体效应至关重要。许多多组分反应已被证明能够经历两种或两种以上的竞争性反应机制,但通常最终的多组分反应加合物是相同的,而不管反应途径如何。离子液体也可能通过一种特定的机制来调节反应。正如我们打算在这里展示的那样,多组分反应和离子液体的结合通常会产生出色的结果并产生许多成就,尽管理解和预测它们对多组分反应的影响都是一个巨大的挑战。
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引用次数: 0
CHAPTER 13. Baeyer–Villiger Oxidation Promoted by Noncovalent Interactions 第13章。非共价相互作用促进Baeyer-Villiger氧化
Pub Date : 2019-03-04 DOI: 10.1039/9781788016490-00283
Nuno M. R. Martins, L. Martins
The relative complexity of noncovalent interactions has made them challenging to study. Nevertheless, theory and modelling have now reached the stage that allows their physical origins to be explained and reliable insight to be gained into their effects on chemical transformations. This chapter discusses the influence of coordination and noncovalent interactions in Baeyer–Villiger oxidations. These attractive forces can be powerful tools in the formation/stabilization of intermediates and in controlling the product outcome of a reaction.
非共价相互作用的相对复杂性使得它们的研究具有挑战性。尽管如此,理论和模型现在已经达到了这样一个阶段,可以解释它们的物理起源,并对它们对化学转化的影响获得可靠的见解。本章讨论了配位和非共价相互作用在Baeyer-Villiger氧化中的影响。这些吸引力是形成/稳定中间体和控制反应产物的有力工具。
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引用次数: 0
CHAPTER 28. Noncovalent Interactions in Biocatalysis – A Theoretical Perspective 28章。生物催化中的非共价相互作用——一个理论视角
Pub Date : 2019-03-04 DOI: 10.1039/9781788016490-00608
G. Velmurugan, R. V. Solomon, Dhurairajan Senthilnathan, P. Venuvanalingam
Noncovalent interactions (NCIs) are Nature's choice for maintaining biological structure and carrying out many biological functions. These delicate forces become stronger and more specific when acting together. They were detected very early as short contacts in crystals or in gas-phase complexes but their systematic understanding is recent. Theoretical methods have greatly aided in understanding their nature and variety and this eventually led to their use in developing chemical, material, biological and technological applications. Recent developments in computer hardware and software have enabled scientists to probe the movements at the atomic level in the active site of complex biological systems and understand the biological processes. This chapter is devoted to explaining the role of NCIs in biocatalysis from a computational perspective. It first introduces the popular theoretical methods used to characterize NCIs and then explains the role of the three main NCIs, namely hydrogen bonding, halogen bonding and hydrophobic interactions, in biocatalysis through six case studies from the literature. The chapter ends with a summary and future directions of this topic.
非共价相互作用(nci)是自然界维持生物结构和实现许多生物功能的选择。这些微妙的力量在共同作用时会变得更强、更具体。它们很早就被发现是晶体或气相配合物中的短接触,但它们的系统认识是最近才出现的。理论方法极大地帮助了人们理解它们的性质和多样性,并最终导致了它们在化学、材料、生物和技术应用方面的应用。计算机硬件和软件的最新发展使科学家们能够在复杂生物系统的活性部位探测原子水平上的运动,并了解生物过程。本章致力于从计算的角度解释NCIs在生物催化中的作用。首先介绍了表征NCIs的常用理论方法,然后通过文献中的六个案例分析,解释了三种主要的NCIs,即氢键、卤素键和疏水相互作用在生物催化中的作用。本章以本主题的总结和未来方向结束。
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引用次数: 0
CHAPTER 23. The Nature of Hydrogen Bonding in Adsorbed CO2 and H2O on Solid Amines in CO2 Capture 23章。CO2捕集中固体胺吸附CO2和H2O的氢键性质
Pub Date : 2019-03-04 DOI: 10.1039/9781788016490-00503
Y. Zhai, S. Wang, S. Chuang
CO2 capture from fossil fuel (coal and natural gas) power plants has been considered a key strategy in mitigating global climate changes. One promising approach under development is the use of solid amine sorbents to bind CO2 in the form of ammonium carbamate from the flue gas of coal-fired power plants in a CO2 capture process. The CO2 capture process by solid amines consists of a number of steps: CO2 adsorption, diffusion and desorption. These steps are governed by the nature of the hydrogen bonding between the ammonium cation and the carbamate anion. This chapter discusses the sources of greenhouse gas emissions, basic principles governing the trapping of infrared energy by greenhouse gases, especially CO2, and the mechanistic step involved in the thermal swing CO2 capture process by solid amines. Infrared spectroscopy is used to illustrate the nature of hydrogen bonding in adsorbed CO2 (i.e. ammonium carbamate) and co-adsorbed CO2/H2O (i.e. hydronium carbamate). In situ infrared spectroscopy shows that hydrogen bonding interactions among these adsorbed species shift the stretching band of N–H and O–H to lower wavenumbers. The extent of hydrogen bonding is reflected in the degree of shift and broadness of the N–H and O–H stretching bands. Fine tuning solid amine (immobilized amine) sorbents for CO2 capture processes requires controlling the structure of amine sites to facilitate CO2 adsorption, diffusion and desorption.
从化石燃料(煤和天然气)发电厂捕获二氧化碳被认为是减缓全球气候变化的关键策略。正在开发的一种有希望的方法是在二氧化碳捕获过程中使用固体胺吸附剂将燃煤电厂烟气中的氨基甲酸铵形式的二氧化碳结合起来。固体胺捕获CO2的过程包括CO2吸附、扩散和解吸几个步骤。这些步骤是由铵离子和氨基甲酸盐阴离子之间的氢键性质决定的。本章讨论了温室气体排放的来源,控制温室气体,特别是CO2捕获红外能量的基本原理,以及固体胺捕获CO2过程中涉及的热摇摆机制步骤。红外光谱用于说明吸附CO2(即氨基甲酸铵)和共吸附CO2/H2O(即氨基甲酸氢铵)中氢键的性质。原位红外光谱分析表明,这些吸附物质之间的氢键相互作用使N-H和O-H的拉伸带向较低的波数移动。氢键的程度反映在N-H和O-H拉伸带的移位程度和宽度上。用于CO2捕获过程的固体胺(固定胺)吸附剂的微调需要控制胺位点的结构,以促进CO2的吸附、扩散和解吸。
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引用次数: 2
CHAPTER 26. Role of Ion Pairing in the Mechanisms of Au(i)-catalysed Reactions: Theory and Experiment 26章。离子对在Au(i)催化反应机制中的作用:理论与实验
Pub Date : 2019-03-04 DOI: 10.1039/9781788016490-00564
D. Zuccaccia, P. Belanzoni, L. Belpassi, G. Ciancaleoni, A. D. Zotto
In this chapter, the role of ion pairing in the mechanism of the reactions promoted by gold(i) catalysts L–Au–X is elucidated by means of both experimental findings and theoretical calculations. The synergy of the approach allowed the full elucidation of the role of the counterion X−. The catalytic performance in the alkoxylation and hydration of alkynes promoted by gold(i) is influenced by the coordinating ability and basicity (proton affinity) of the counterion, the anion/cation relative orientation and the appropriate matching of X− and L. Finally, how the nature of the anion plays a fundamental role in solvent-, silver- and acid-free gold(i)-catalysed hydration of alkynes is highlighted.
在本章中,通过实验结果和理论计算,阐明了离子配对在金(i)催化剂L-Au-X促进反应机理中的作用。该方法的协同作用允许充分阐明反X−的作用。金(i)对烷基氧基化和水化的催化性能受反离子的配位能力和碱度(质子亲和度)、阴离子/阳离子的相对取向以及X -和l的适当匹配的影响。最后,阴离子的性质如何在无溶剂、无银和无酸金(i)催化的烷基氧基化和水化过程中发挥重要作用。
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引用次数: 1
CHAPTER 25. Mechanochemical Activation and Catalysis 第25章。机械化学活化与催化
Pub Date : 2019-03-04 DOI: 10.1039/9781788016490-00548
M. N. Kopylovich, A. Ribeiro, E. C. Alegria
Chemical transformations induced by mechanical force in solids are remarkable since they facilitate syntheses that are normally difficult to achieve in solution and thus allow the preparation of new molecules and materials or drastic improvements of the yields and selectivities. In many cases, the noncovalent interactions (NCIs) with mechanochemical treatment differ significantly from those which occur in analogous solvent-assisted processes. Moreover, if a “mechanocatalyst” is introduced into the system, it can additionally alter the NCIs, bond energies and properties of the reaction intermediates. As result, the outcome of many mechanocatalytic reactions can be very different in terms of efficiency or even reaction pathways compared with the traditional solution-based procedures or noncatalytic mechanochemical processes. Accordingly, in this chapter, certain mechanocatalytic reactions in which the NCIs play a key role are overviewed and discussed. Additionally, an overview of some experimental techniques used to study mechanochemical activation and the respective NCIs is also provided.
在固体中由机械力引起的化学转化是显著的,因为它们促进了通常在溶液中难以实现的合成,从而允许制备新的分子和材料,或大幅度提高产量和选择性。在许多情况下,机械化学处理的非共价相互作用(NCIs)与类似溶剂辅助过程中的非共价相互作用有很大不同。此外,如果在体系中引入“机械催化剂”,它还可以改变反应中间体的NCIs、键能和性质。因此,与传统的基于溶液的程序或非催化机械化学过程相比,许多机械催化反应的结果在效率甚至反应途径方面可能有很大不同。因此,在本章中,对NCIs起关键作用的某些机械催化反应进行概述和讨论。此外,还提供了一些用于研究机械化学活化和各自NCIs的实验技术的概述。
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引用次数: 2
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