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Enhanced HP1α homodimer interaction via force-induced salt bridge formation: implications for chromatin crosslinking and phase separation† 通过力诱导盐桥形成增强HP1α同源二聚体相互作用:对染色质交联和相分离的影响†
Pub Date : 2024-02-13 DOI: 10.1039/D3MR00011G
Shingo Tsukamoto, Mohammad Khavani, Nya Domkam and Mohammad R. K. Mofrad

Recent studies have underscored the potential role of Heterochromatin Protein 1α (HP1α) in chromatin crosslinking, phase separation, and the orchestration of nuclear mechanics. One of the cornerstones of HP1α functionality lies in its homodimerization through the chromoshadow domain (CSD), which is crucial for these processes. Nevertheless, it has remained unknown how HP1α can foster condensations responding to mechanical force and induce phase separation in the mechanically unfavorable heterochromatin region. To elucidate the biophysical basis of HP1α, we used full atomistic molecular dynamics (MD) simulations, focusing on the CSD–CSD dimer of HP1α under a pulling force. Notably, force application resulted in a stronger, more stable interaction at the α-helix interface of the CSD–CSD. This enhanced interaction was attributed to a force-induced salt bridge formation on the α-helix interface, emerging from an angle alteration of a lysine residue that enables closer proximity to a glutamic acid residue on the paired CSD. This study reveals an intriguing facet of HP1α mechanics: its mechanical sensitivity, wherein dimerization strength is enhanced by mechanical force. The molecular dynamics of the CSD–CSD dimer under force provide novel insights into HP1α mechanics, contributing to our understanding of chromatin mechanics and phase separation.

最近的研究强调了异染色质蛋白 1α(HP1α)在染色质交联、相分离和核机械协调中的潜在作用。HP1α 功能的基石之一是通过染色质阴影结构域(CSD)进行同源二聚化,这对这些过程至关重要。然而,HP1α如何在机械不利的异染色质区域促进对机械力做出反应的凝集并诱导相分离仍是未知数。为了阐明HP1α的生物物理基础,我们使用了全原子分子动力学(MD)模拟,重点研究了在拉力作用下HP1α的CSD-CSD二聚体。值得注意的是,施力后,CSD-CSD 的 α 螺旋界面产生了更强、更稳定的相互作用。这种相互作用的增强归因于α-螺旋界面上由外力诱导形成的盐桥,该盐桥是由赖氨酸残基的角度变化引起的,它使配对 CSD 上的谷氨酸残基更加接近。这项研究揭示了 HP1α 力学的一个有趣方面:它的机械敏感性,即二聚化强度会因机械力而增强。CSD-CSD 二聚体在作用力下的分子动力学提供了对 HP1α 力学的新见解,有助于我们理解染色质力学和相分离。
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引用次数: 0
Theory of flow-induced covalent polymer mechanochemistry in dilute solutions† 稀溶液中流动诱导共价聚合物机械化学理论†.
Pub Date : 2024-02-06 DOI: 10.1039/D3MR00009E
Etienne Rognin, Niamh Willis-Fox and Ronan Daly

Predicting polymer mechanochemistry in arbitrary flows is challenging due to the diversity of chain conformations, competition among stretched bonds, and flow heterogeneity. Here, we demonstrate that the vast diversity of polymer unravelling pathways must be accounted for, rather than considering an averaged chain conformation. We propose a model that describes both mechanophore activation and non-specific backbone scission, where the reaction rates depend solely on fluid kinematics. Validated with coarse-grained molecular dynamics simulations in complex flows, the model captures mechanochemistry onset, intact chain half-life, and non-specific scission.

由于链构象的多样性、拉伸键之间的竞争以及流动的异质性,预测任意流动中的聚合物机械化学具有挑战性。在此,我们证明必须考虑到聚合物解开路径的巨大多样性,而不是考虑平均的链构象。我们提出了一个模型,该模型可同时描述机械杆活化和非特异性骨架断裂,其中反应速率完全取决于流体运动学。通过在复杂流体中进行粗粒度分子动力学模拟验证,该模型捕捉到了机械化学起始、完整链半衰期和非特异性裂解。
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引用次数: 0
Systematic investigation of the mechanocatalytic partial depolymerization of cellulose towards oligomeric glycans 对纤维素在机械催化下部分解聚成低聚糖的系统研究
Pub Date : 2024-02-05 DOI: 10.1039/D3MR00005B
Gregor Meyer, Dominique Lumpp, Anne-Kathrin Stulik, Dagmar Hoffmann and Marcus Rose

The selective depolymerization of cellulose is a major challenge and usually leads to the formation of monosaccharides as main products. Once depolymerized, various platform chemicals such as 5-hydroxymethylfurfural and furfural can be obtained from cellulose. Our work aims to convert cellulose selectively into oligomeric glycans as more valuable products compared to sugars, by using mechanocatalysis in a planetary ball mill. In this work, reaction parameters such as acid content, filling level, rotational speed and grinding duration were investigated systematically and optimized towards a maximum amount of soluble oligomeric species and a minimum of monosaccharides. The systematic investigation of the mechanocatalytic partial depolymerization resulted in a nearly full-soluble fraction containing oligomeric glycans.

纤维素的选择性解聚是一项重大挑战,其主要产物通常是单糖。一旦解聚,就可以从纤维素中获得各种平台化学品,如 5- 羟甲基糠醛和糠醛。我们的工作旨在通过行星球磨机中的机械催化,将纤维素选择性地转化为低聚糖,使其成为比糖更有价值的产品。在这项工作中,我们对酸含量、填充度、转速和研磨持续时间等反应参数进行了系统研究和优化,以获得最多的可溶性低聚物和最少的单糖。通过对机械催化部分解聚的系统研究,得到了含有低聚糖的近乎全溶部分。
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引用次数: 0
In situ investigation of controlled polymorphism in mechanochemistry at elevated temperature† 原位研究高温† 机械化学中的受控多态性
Pub Date : 2024-01-31 DOI: 10.1039/D3MR00019B
Kevin Linberg, Philipp C. Sander, Franziska Emmerling and Adam A. L. Michalchuk

Mechanochemistry routinely provides solid forms (polymorphs) that are difficult to obtain by conventional solution-based methods, making it an exciting tool for crystal engineering. However, we are far from identifying the full scope of mechanochemical strategies available to access new and potentially useful solid forms. Using the model organic cocrystal system of nicotinamide (NA) and pimelic acid (PA), we demonstrate with variable temperature ball milling that ball milling seemingly decreases the temperature needed to induce polymorph conversion. Whereas Form I of the NA:PA cocrystal transforms into Form II at 90 °C under equilibrium conditions, the same transition occurs as low as 65 °C during ball milling: a ca 25 °C reduction of the transition temperature. Our results indicate that mechanical energy provides a powerful control parameter to access new solid forms under more readily accessible conditions. We expect this ‘thermo-mechanical’ approach for driving polymorphic transformations to become an important tool for polymorph screening and manufacturing.

机械化学通常能提供传统溶液法难以获得的固体形态(多晶体),使其成为晶体工程中令人兴奋的工具。然而,我们还远未完全确定机械化学策略可用于获得新的、潜在有用的固态形式。通过使用烟酰胺(NA)和柚皮酸(PA)的有机共晶体模型系统,我们用变温球磨法证明,球磨似乎降低了诱导多晶型转换所需的温度。在平衡条件下,NA:PA 共晶体的形态 I 在 90 °C 时转变为形态 II,而在球磨过程中,同样的转变发生在低至 65 °C 的温度下:转变温度降低了约 25 °C。我们的研究结果表明,机械能提供了一个强大的控制参数,可以在更容易获得的条件下获得新的固体形态。我们希望这种驱动多晶体转变的 "热机械 "方法能够成为多晶体筛选和制造的重要工具。
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引用次数: 0
Halogen-bonded cocrystals via resonant acoustic mixing† 通过共振声混合实现卤键共晶体
Pub Date : 2024-01-31 DOI: 10.1039/D3MR00028A
Alireza Nari, Jeffrey S. Ovens and David L. Bryce

Resonant acoustic mixing is a relatively gentle mechanochemical technology that employs pressure waves to induce chemical and morphological transformations. We report here on the production of eleven halogen-bonded (XB) cocrystalline architectures via neat and liquid-assisted resonant acoustic mixing (RAM). Two strong iodinated XB donors, namely 1,4-diiodotetrafluorobenzene (p-DITFB, 1) and 1,3,5-trifluoro-2,4,6-triiodobenzene (sym-TFTIB, 2) each react with five XB donors, namely 2,3,5,6-tetramethylpyrazine (TMP, a), 4-dimethylaminopyridine (DMAP, b), 1,10-phenanthroline (o-Ph, c), 1,10-phenanthroline-5,6-dione (PheDON, d), and 4,5-diazafluoren-9-one (DIZFON, e) to form ten cocrystals. For these systems, it is shown that RAM is capable of producing the same products as are obtained via ball milling. Two novel cocrystals are obtained (of 2d featuring bifurcated XBs, and 2e featuring monofurcated XBs) and their single-crystal X-ray structures are reported. However, an eleventh stoichiomorphic cocrystal of p-DITFB and TMP is obtained exclusively via RAM, suggesting that the combination of RAM and milling approaches may afford a broader exploration of the polymorphic and stoichiomorphic landscape than the use of a single technique in isolation. All products are characterized via powder X-ray diffraction, and 13C cross-polarization magic angle spinning (CP/MAS) and 19F MAS NMR spectroscopy, providing further evidence for the phase purity of samples obtained from RAM experiments and for the degree of polymorphic control available when small volumes of liquid are employed in mechanochemical reactions. This work demonstrates the potential of RAM for the production of known and novel halogen-bonded cocrystalline assemblies, including polymorphic and stoichiomorphic structures.

共振声学混合是一种相对温和的机械化学技术,它利用压力波诱导化学和形态转变。我们在此报告了通过纯液体和液体辅助共振声学混合(RAM)技术生产出的十一种卤素键(XB)共晶体结构。两种强碘化 XB 给体,即 1,4-二碘四氟苯(p-DITFB,1)和 1,3,5-三氟-2,4,6-三碘苯 (sym-TFTIB,2)分别与五种 XB 给体,即 2,3,5、2,4,6-四甲基吡嗪(2,3,5-sym-TFTIB,3)和 2,4,6-四甲基吡嗪(2,4,6-sym-TFTIB,3)发生反应、6-四甲基吡嗪(TMP,a)、4-二甲氨基吡啶(DMAP,b)、1,10-菲罗啉(o-Ph,c)、1,10-菲罗啉-5,6-二酮(PheDON,d)和 4,5-二氮芴-9-酮(DIZFON,e)反应,形成十种共晶体。对于这些体系,研究表明 RAM 能够产生与球磨法相同的产物。研究人员还获得了两种新的共晶体(2d 具有分叉的 XBs,2e 具有单叉的 XBs),并报告了它们的单晶 X 射线结构。不过,p-DITFB 和 TMP 的第 11 种共晶体完全是通过 RAM 获得的,这表明 RAM 和研磨方法的结合比单独使用一种技术能更广泛地探索多晶型和共晶型。所有产品都通过粉末 X 射线衍射、13C 交叉偏振魔角旋光(CP/MAS)和 19F MAS NMR 光谱进行了表征,进一步证明了从 RAM 实验中获得的样品的相纯度,以及在机械化学反应中使用小体积液体时的多态控制程度。这项工作证明了 RAM 在生产已知和新型卤键共晶组合物方面的潜力,包括多晶型结构和同素异形结构。
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引用次数: 0
Iron-free mechanochemical limonene inverse vulcanization† 无铁机械化学柠檬烯反硫化†工艺
Pub Date : 2024-01-29 DOI: 10.1039/D3MR00002H
Rima Tedjini, Raquel Viveiros, Teresa Casimiro and Vasco D. B. Bonifácio

An iron-free mechanochemical-assisted limonene inverse vulcanization is reported. The process makes use of only limonene and sulphur, industrial waste by-products, under mild conditions (ca. 40 °C) and short time (2 h) using a zirconium oxide reactor and a planetary ball mil. The obtained high value products are light yellow solids, readily soluble in chloroform, optically active oligosulfides, which are different from polysulfides reported under conventional conditions (ca. 185 °C), as confirmed by NMR spectroscopy and mass spectrometry. A general reaction mechanism is proposed, initiated by homolytic sulphur ring opening triggered by mechanical stress, and involving thiirane intermediates, via an addition–elimination reaction of sulphur to the limonene double bonds.

报告了一种无铁机械化学辅助柠檬烯反硫化法。该工艺仅使用了工业废副产品柠檬烯和硫,使用氧化锆反应器和行星式球磨机,条件温和(约 40 °C),时间短(2 小时)。所获得的高价值产品为浅黄色固体,易溶于氯仿,具有光学活性的低聚硫化物,不同于传统条件下(约 185 °C)的多硫化物,核磁共振光谱和质谱分析证实了这一点。提出了一种一般的反应机理,该机理由机械应力引发的同解硫环开端,并通过硫与柠檬烯双键的加成-消除反应,涉及硫环中间体。
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引用次数: 0
Base-mediated trimerization of enones under solvent-free and ball-milling conditions† 无溶剂和球磨条件下基介导的烯酮三聚反应†。
Pub Date : 2024-01-29 DOI: 10.1039/D3MR00010A
Gang Shao, Pinhua Li, Zheng-Chun Yin, Jun-Shen Chen, Xu-Ling Xia and Guan-Wu Wang

An efficient mechanochemical trimerization of enones with KOtBu as the base and water as the proton source under solvent-free and ambient conditions has been developed. This protocol provides novel, simple, rapid and scalable access to 1,3,5-triaryl-2,4-acyl-cyclohexanols, which exist as chair conformations with all bulky substituents located at equatorial positions. In addition, the formed cyclohexanol derivatives can be further dehydrated to afford the corresponding cyclohexene derivatives with β,γ-unsaturation. By changing the type or amount of the employed base, another type of stereoisomer, where the 4-acyl group is situated at the axial position, can be favorably generated as the major product.

以 KOtBu 为碱基,以水为质子源,在无溶剂和常温条件下对烯酮进行高效的机械化学三聚化反应。该方案提供了一种新颖、简单、快速和可扩展的方法来获得 1,3,5-三芳基-2,4-酰基环己醇,这些环己醇以椅子构象存在,所有大块取代基都位于赤道位置。此外,形成的环己醇衍生物还可以进一步脱水,得到相应的具有 β、γ-不饱和度的环己烯衍生物。通过改变所用碱的类型或用量,可以生成另一种 4-酰基位于轴向位置的立体异构体作为主要产物。
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引用次数: 0
Synthesis of α-ketothioamides with elemental sulfur under solvent-free conditions in a mixer mill† 在无溶剂条件下用元素硫在混合磨中合成 α-硫代酮酰胺†。
Pub Date : 2024-01-29 DOI: 10.1039/D3MR00025G
Chandan Chittapriya Sahu, Sourav Biswas, Renè Hommelsheim and Carsten Bolm

A mechanochemical base-mediated synthesis of α-ketothioamide from readily available acetophenone derivatives is developed. The reaction is metal-free, solventless, and proceeds in a short reaction time. Importantly, the products differ from those formed under standard solution-based protocols.

本研究开发了一种以容易获得的苯乙酮衍生物为原料的机械化学碱介导的 α-硫代酮酰胺合成方法。该反应不含金属,无溶剂,反应时间短。重要的是,该反应生成的产物与标准溶液法生成的产物不同。
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引用次数: 0
Visualization of mechanochemical polymer-chain scission in double-network elastomers using a radical-transfer-type fluorescent molecular probe† 利用自由基转移型荧光分子探针观察双网弹性体中的机械化学聚合物链断裂†。
Pub Date : 2024-01-29 DOI: 10.1039/D3MR00016H
Takumi Yamamoto, Akira Takahashi and Hideyuki Otsuka

Double-network (DN) elastomers are renowned for combining stiffness and toughness. Their exceptional physical properties have garnered significant attention in recent years. However, the fracture phenomena in DN elastomers are much less understood than those in DN gels due to the limited scope of visualization methods. Here, we demonstrate the visualization of sacrificial bond cleavage in DN elastomers during elongation by adding a diarylacetonitrile (DAAN) derivative as a radical-transfer-type fluorescent molecular probe, which enables the visualization of polymer-chain scission without altering the mechanical properties. A tensile test of the DN elastomers that contain DAAN revealed that mechanoradicals are generated from the entire elongated region of the elastomers in the strain-hardening region. In contrast, DN gels generate mechanoradicals only at the necked region. This method is expected to accelerate the investigation of the fracture properties of various DN elastomers.

双网(DN)弹性体因兼具刚度和韧性而闻名于世。近年来,其卓越的物理性能引起了广泛关注。然而,由于可视化方法的范围有限,人们对 DN 弹性体断裂现象的了解远远少于 DN 凝胶。在这里,我们通过添加二芳基乙腈(DAAN)衍生物作为自由基转移型荧光分子探针,展示了伸长过程中 DN 弹性体中牺牲键断裂的可视化,从而在不改变机械性能的情况下实现聚合物链断裂的可视化。对含有 DAAN 的 DN 弹性体进行的拉伸测试表明,在应变硬化区域,弹性体的整个拉长区域都会产生机械自旋体。相比之下,DN 凝胶仅在颈部区域产生机化二缩醛。这种方法有望加快对各种 DN 弹性体断裂特性的研究。
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引用次数: 0
Index 指数
Pub Date : 2020-12-07 DOI: 10.1515/9783110608335-007
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引用次数: 0
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RSC Mechanochemistry
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