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Ion mobility spectrometry and ion mobility-mass spectrometry in clinical chemistry. 离子迁移谱法和离子迁移-质谱法在临床化学中的应用。
Pub Date : 2025-01-01 Epub Date: 2024-11-01 DOI: 10.1016/bs.acc.2024.10.003
Kyle E Lira, Jody C May, John A McLean

Advancements in clinical chemistry have major implications in terms of public health, prompting many clinicians to seek out chemical information to aid in diagnoses and treatments. While mass spectrometry (MS) and hyphenated-MS techniques such as LC-MS or tandem MS/MS have long been the analytical methods of choice for many clinical applications, these methods routinely demonstrate difficulty in differentiating between isomeric forms in complex matrices. Consequently, ion mobility spectrometry (IM), which differentiates molecules on the basis of size, shape, and charge, has demonstrated unique advantages in the broad application of stand-alone IM and hyphenated IM instruments towards clinical challenges. Here, we highlight representative IM applications and approaches and describe contemporary commercial offerings of IM technology and how these can be, or are currently being, applied to the field of clinical chemistry.

临床化学的进步对公共卫生有重大影响,促使许多临床医生寻找化学信息来帮助诊断和治疗。虽然质谱(MS)和联用质谱技术(如LC-MS或串联质谱/质谱)长期以来一直是许多临床应用的分析方法选择,但这些方法通常难以区分复杂基质中的异构体形式。因此,离子迁移谱法(IM)根据大小、形状和电荷来区分分子,在独立的IM和连字符的IM仪器广泛应用于临床挑战方面显示出独特的优势。在这里,我们重点介绍了具有代表性的IM应用和方法,并描述了IM技术的当代商业产品,以及这些技术如何能够或目前正在应用于临床化学领域。
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引用次数: 0
Lupus nephritis: Biomarkers. 狼疮性肾炎:生物标志物。
Pub Date : 2025-01-01 Epub Date: 2024-11-07 DOI: 10.1016/bs.acc.2024.10.002
Chrisanna Dobrowolski, Shu Min Lao, Fadi Kharouf, Paula Parnizari Croci, Joan Wither, Dafna D Gladman, Laura Whitall Garcia, Arenn Jauhal, Zahi Touma

Lupus nephritis (LN) or renal involvement of systemic lupus erythematosus (SLE), is a common manifestation occurring in at least 50 % of SLE patients. LN remains a significant source of morbidity, often leading to progressive renal dysfunction and is a major cause of death in SLE. Despite these challenges, advances in the understanding of the pathogenesis and genetic underpinnings of LN have led to a commendable expansion in available treatments over the past decade. This chapter provides a foundation for the understanding LN pathogenesis, diagnosis, and epidemiology, and guides the reader through recent advances in biomarkers, genetic susceptibility of this intricate condition.

狼疮性肾炎(LN)或系统性红斑狼疮(SLE)的肾脏受累,是至少50% SLE患者的常见表现。LN仍然是发病率的重要来源,常导致进行性肾功能障碍,也是SLE患者死亡的主要原因。尽管存在这些挑战,但在过去十年中,对LN发病机制和遗传基础的理解取得了进展,导致了可用治疗方法的值得称赞的扩展。本章为理解LN的发病机制、诊断和流行病学提供了基础,并指导读者了解这种复杂疾病的生物标志物和遗传易感性的最新进展。
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引用次数: 0
Emerging biomarkers in Gaucher disease. 戈谢病新出现的生物标志物。
Pub Date : 2025-01-01 Epub Date: 2025-01-07 DOI: 10.1016/bs.acc.2024.11.001
Danielle M Luettel, Marcia R Terluk, Jaehyeok Roh, Neal J Weinreb, Reena V Kartha

Gaucher disease (GD) is a rare lysosomal disorder characterized by the accumulation of glycosphingolipids in macrophages resulting from glucocerebrosidase (GCase) deficiency. The accumulation of toxic substrates, which causes the hallmark symptoms of GD, is dependent on the extent of enzyme dysfunction. Accordingly, three distinct subtypes have been recognized, with type 1 GD (GD1) as the common and milder form, while types 2 (GD2) and 3 (GD3) are categorized as neuronopathic and severe. Manifestations variably include hepatosplenomegaly, anemia, thrombocytopenia, easy bruising, inflammation, bone pain and other skeletal pathologies, abnormal eye movements and neuropathy. Although the molecular basis of GD is relatively well understood, currently used biomarkers are nonspecific and inadequate for making finer distinctions between subtypes and in evaluating changes in disease status and guiding therapy. Thus, there is continued effort to investigate and identify potential biomarkers to improve GD diagnosis, monitoring and potential identification of novel therapeutic targets. Here, we provide a comprehensive review of emerging biomarkers in GD that can enhance current understanding and improve quality of life through better testing, disease management and treatment.

戈谢病(GD)是一种罕见的溶酶体疾病,其特征是糖脑苷酶(GCase)缺乏导致巨噬细胞中鞘糖脂积累。引起GD标志性症状的有毒底物的积累取决于酶功能障碍的程度。因此,已经识别出三种不同的亚型,1型GD (GD1)是常见的和较轻的形式,而2型(GD2)和3型(GD3)被归类为神经病变和严重。表现多样,包括肝脾肿大、贫血、血小板减少、易瘀伤、炎症、骨痛等骨骼病变、眼动异常和神经病变。虽然GD的分子基础已经被很好地理解,但目前使用的生物标志物是非特异性的,不足以对亚型进行更精细的区分,也不足以评估疾病状态的变化和指导治疗。因此,需要继续努力研究和鉴定潜在的生物标志物,以改善GD的诊断、监测和潜在的新治疗靶点的鉴定。在这里,我们全面回顾了GD中新兴的生物标志物,这些标志物可以通过更好的检测、疾病管理和治疗来增强当前的认识并改善生活质量。
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引用次数: 0
Visceral fat distribution: Interracial studies. 内脏脂肪分布:跨种族研究。
Pub Date : 2025-01-01 Epub Date: 2024-11-05 DOI: 10.1016/bs.acc.2024.10.001
Santasree Banerjee, Jiayin Lv, Chang He, Baiyu Qi, Weijie Ding, Kongrong Long, Junrong Chen, Jianping Wen, Peng Chen

Visceral adipose tissue, a type of abdominal adipose tissue, is highly involved in lipolysis. Because increased visceral adiposity is strongly associated with the metabolic complications related with obesity, such as type 2 diabetes and cardiovascular disease, there is a need for precise, targeted, personalized and site-specific measures clinically. Existing studies showed that ectopic fat accumulation may be characterized differently among different populations due to complex genetic architecture and non-genetic or epigenetic components, ie, Asians have more and Africans have less visceral fat vs Europeans. In this review, we summarize the effects of multiple non-genetic and genetic factors on visceral fat distribution across races. Non-genetic factors include diet, socioeconomic status, sex hormones and psychological factors, etc. We examine genetic factors of racial differences in visceral fat content as well as possible regulatory pathways associated with interracial visceral fat distribution. A comprehensive understanding of both genetic and non-genetic factors that influence the distribution of visceral fat among races, leads us to predict risk of abdominal obesity and metabolic diseases in ethnic groups that enables targeted interventions through accurate diagnosis and treatment as well as reduced risk of obesity-associated complications.

内脏脂肪组织,腹部脂肪组织的一种,高度参与脂肪分解。由于内脏脂肪增加与肥胖相关的代谢并发症(如2型糖尿病和心血管疾病)密切相关,因此临床上需要精确、有针对性、个性化和部位特异性的措施。现有研究表明,由于复杂的遗传结构和非遗传或表观遗传成分,不同人群的异位脂肪积累可能具有不同的特征,即与欧洲人相比,亚洲人的内脏脂肪较多,非洲人的内脏脂肪较少。在这篇综述中,我们总结了多种非遗传和遗传因素对不同种族内脏脂肪分布的影响。非遗传因素包括饮食、社会经济地位、性激素和心理因素等。我们研究了种族间内脏脂肪含量差异的遗传因素,以及与种族间内脏脂肪分布相关的可能的调节途径。全面了解影响种族间内脏脂肪分布的遗传和非遗传因素,使我们能够预测种族中腹部肥胖和代谢性疾病的风险,从而通过准确的诊断和治疗进行有针对性的干预,并降低肥胖相关并发症的风险。
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引用次数: 0
Preface. 前言。
Pub Date : 2025-01-01 DOI: 10.1016/S0065-2423(25)00008-3
Gregory S Makowski
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引用次数: 0
Multiomics in cancer biomarker discovery and cancer subtyping. 多组学在癌症生物标志物发现和癌症分型中的应用。
Pub Date : 2025-01-01 Epub Date: 2024-10-29 DOI: 10.1016/bs.acc.2024.10.004
Seunghwan Choi, Joon-Yong An

The advent of multiomics has ushered in a new era of cancer research characterized by integrated genomic, transcriptomic and proteomic analysis to unravel the complexities of cancer biology and facilitate the discovery of novel biomarkers. This chapter provides a comprehensive overview of the concept of multiomics, detailing the significant advances in the underlying technologies and their contributions to our understanding of cancer. It delves into the evolution of genomics and transcriptomics, breakthroughs in proteomics, and overarching progress in multiomic methodologies, highlighting their collective impact on cancer biomarker discovery. Furthermore, this chapter explores the computational methods essential for multiomic studies, including clustering techniques for delineating cancer subtypes, strategies for estimating molecular features and activities, and utility of pathway enrichment analyses for interpreting multiomic datasets. Particular focus has been placed on the application of these methods for identifying distinct cancer subtypes, thereby enabling a more personalized approach to cancer treatment. Through a detailed discussion of the scientific principles, technological advancements, and practical applications of multiomics, this chapter aims to underscore the pivotal role of multiomics in advancing cancer research and paving the way for personalized medicine. The insights provided herein not only illuminate the current landscape of cancer biomarker discovery, but also forecast future directions of multiomics research in oncology, advocating for a more integrated and nuanced approach to understanding and combating cancer.

多组学的出现开创了癌症研究的新时代,其特点是整合基因组学、转录组学和蛋白质组学分析,以揭示癌症生物学的复杂性,并促进新的生物标志物的发现。本章提供了多组学概念的全面概述,详细介绍了基础技术的重大进展及其对我们理解癌症的贡献。它深入研究了基因组学和转录组学的发展,蛋白质组学的突破,以及多组学方法的总体进展,突出了它们对癌症生物标志物发现的集体影响。此外,本章探讨了多组学研究必不可少的计算方法,包括描述癌症亚型的聚类技术,估计分子特征和活动的策略,以及解释多组学数据集的途径富集分析的效用。特别关注的是这些方法的应用,以识别不同的癌症亚型,从而使癌症治疗更加个性化。通过对多组学的科学原理、技术进步和实际应用的详细讨论,本章旨在强调多组学在推进癌症研究和为个性化医疗铺平道路方面的关键作用。本文提供的见解不仅阐明了癌症生物标志物发现的现状,而且预测了肿瘤学多组学研究的未来方向,倡导一种更综合、更细致的方法来理解和对抗癌症。
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引用次数: 0
Urinary biomarkers of preeclampsia: An update. 子痫前期的尿液生物标志物:最新进展。
Pub Date : 2025-01-01 Epub Date: 2024-11-22 DOI: 10.1016/bs.acc.2024.11.002
Caio Ribeiro Vieira Leal, Heloisa Botezelli, Júlia Fernandes do Carmo Las Casas, Ana Cristina Simões E Silva, Fernando M Reis

Preeclampsia (PE), a pregnancy-related syndrome, has motivated extensive research to understand its pathophysiology and develop early diagnostic methods. 'Omic' technologies, focusing on genes, mRNA, proteins, and metabolites, have revolutionized biological system studies. Urine emerges as an ideal non-invasive specimen for omics analysis, offering accessibility, easy collection, and stability, making it valuable for identifying biomarkers. A comprehensive exploration of urinary omics in preeclampsia is discussed in this review. Proteomic studies identified biomarkers such as SERPINA-1 and uromodulin, showing promise for early diagnosis and severity assessment. Metabolomic analyses revealed alterations in metabolites like glycine and hippurate, providing insights into molecular mechanisms underlying PE. Challenges include methodological inconsistencies and the need for standardized protocols. Urinary omics technologies have significantly advanced our understanding of PE pathophysiology and hold promise for improved diagnosis and management. Biomarkers identified through these approaches offer potential for early detection, severity stratification, and elucidation of underlying mechanisms.

先兆子痫(PE)是一种妊娠相关综合征,已引起广泛的研究,以了解其病理生理和开发早期诊断方法。“组学”技术,专注于基因,mRNA,蛋白质和代谢物,已经彻底改变了生物系统的研究。尿液作为组学分析的理想非侵入性标本,具有可访问性、易于收集和稳定性,使其对识别生物标志物有价值。本文综述了泌尿组学在子痫前期的研究进展。蛋白质组学研究确定了SERPINA-1和尿调蛋白等生物标志物,显示了早期诊断和严重程度评估的希望。代谢组学分析揭示了代谢物如甘氨酸和hippurate的变化,为PE的分子机制提供了见解。挑战包括方法的不一致性和对标准化协议的需求。泌尿组学技术显著提高了我们对PE病理生理学的理解,并有望改善诊断和管理。通过这些方法确定的生物标志物为早期检测、严重程度分层和阐明潜在机制提供了潜力。
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引用次数: 0
RNA biomarkers in cancer therapeutics: The promise of personalized oncology. 癌症治疗中的 RNA 生物标记物:个性化肿瘤学的前景。
Pub Date : 2024-01-01 Epub Date: 2024-06-21 DOI: 10.1016/bs.acc.2024.06.003
Hector Katifelis, Maria Gazouli

Cancer therapy is a rapidly evolving and constantly expanding field. Current approaches include surgery, conventional chemotherapy and novel biologic agents as in immunotherapy, that together compose a wide armamentarium. The plethora of choices can, however, be clinically challenging in prescribing the most suitable treatment for any given patient. Fortunately, biomarkers can greatly facilitate the most appropriate selection. In recent years, RNA-based biomarkers have proven most promising. These molecules that range from small noncoding RNAs to protein coding gene transcripts can be valuable in cancer management and especially in cancer therapeutics. Compared to their DNA counterparts which are stable throughout treatment, RNA-biomarkers are dynamic. This allows prediction of success prior to treatment start and can identify alterations in expression that could reflect response. Moreover, improved nucleic acid technology allows RNA to be extracted from practically every biofluid/matrix and evaluated with exceedingly high analytic sensitivity. In addition, samples are largely obtained by minimally invasive procedures and as such can be used serially to assess treatment response real-time. This chapter provides the reader insight on currently known RNA biomarkers, the latest research employing Artificial Intelligence in the identification of such molecules and in clinical decisions driving forward the era of personalized oncology.

癌症治疗是一个快速发展和不断扩展的领域。目前的治疗方法包括手术、传统化疗和免疫疗法中的新型生物制剂,它们共同组成了一个庞大的治疗体系。然而,过多的选择可能会给临床带来挑战,难以为特定患者开出最合适的治疗处方。幸运的是,生物标志物可以极大地帮助人们做出最合适的选择。近年来,基于 RNA 的生物标志物被证明是最有前途的。从小型非编码 RNA 到蛋白编码基因转录本,这些分子在癌症管理,特别是癌症治疗中都很有价值。与在整个治疗过程中保持稳定的 DNA 类似物相比,RNA 生物标记物是动态的。这样就可以在治疗开始前预测治疗的成功与否,并能识别反映反应的表达变化。此外,经过改进的核酸技术可以从几乎所有生物流体/基质中提取 RNA,并以极高的分析灵敏度进行评估。此外,大部分样本都是通过微创手术获得的,因此可连续用于实时评估治疗反应。本章将向读者深入介绍目前已知的 RNA 生物标记物、采用人工智能识别此类分子的最新研究以及推动个性化肿瘤学时代到来的临床决策。
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引用次数: 0
Preface. 序言
Pub Date : 2024-01-01 DOI: 10.1016/S0065-2423(24)00077-5
Gregory S Makowski
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引用次数: 0
Adipokines in pregnancy. 孕期脂肪因子
Pub Date : 2024-01-01 Epub Date: 2024-05-15 DOI: 10.1016/bs.acc.2024.04.006
Monika Dawid, Karolina Pich, Ewa Mlyczyńska, Natalia Respekta-Długosz, Dominka Wachowska, Aleksandra Greggio, Oliwia Szkraba, Patrycja Kurowska, Agnieszka Rak

Reproductive success consists of a sequential events chronology, starting with the ovum fertilization, implantation of the embryo, placentation, and cellular processes like proliferation, apoptosis, angiogenesis, endocrinology, or metabolic changes, which taken together finally conduct the birth of healthy offspring. Currently, many factors are known that affect the regulation and proper maintenance of pregnancy in humans, domestic animals, or rodents. Among the determinants of reproductive success should be distinguished: the maternal microenvironment, genes, and proteins as well as numerous pregnancy hormones that regulate the most important processes and ensure organism homeostasis. It is well known that white adipose tissue, as the largest endocrine gland in our body, participates in the synthesis and secretion of numerous hormones belonging to the adipokine family, which also may regulate the course of pregnancy. Unfortunately, overweight and obesity lead to the expansion of adipose tissue in the body, and its excess in both women and animals contributes to changes in the synthesis and release of adipokines, which in turn translates into dramatic changes during pregnancy, including those taking place in the organ that is crucial for the proper progress of pregnancy, i.e. the placenta. In this chapter, we are summarizing the current knowledge about levels of adipokines and their role in the placenta, taking into account the physiological and pathological conditions of pregnancy, e.g. gestational diabetes mellitus, preeclampsia, or intrauterine growth restriction in humans, domestic animals, and rodents.

从卵子受精、胚胎植入、胎盘形成到细胞增殖、凋亡、血管生成、内分泌或新陈代谢变化等过程,这些过程共同作用,最终孕育出健康的后代。目前,已知有许多因素会影响人类、家畜或啮齿动物妊娠的调节和正常维持。生殖成功的决定因素包括:母体微环境、基因、蛋白质以及多种妊娠激素,它们能调节最重要的过程并确保机体平衡。众所周知,白色脂肪组织是人体最大的内分泌腺,参与合成和分泌属于脂肪因子家族的多种激素,这些激素也可能调节妊娠过程。不幸的是,超重和肥胖会导致体内脂肪组织的扩张,而妇女和动物体内脂肪组织的过剩又会导致脂肪因子的合成和释放发生变化,进而转化为妊娠期间的剧烈变化,包括对妊娠正常进行至关重要的器官(即胎盘)中发生的变化。在本章中,我们将结合人类、家畜和啮齿类动物妊娠期的生理和病理状况,如妊娠糖尿病、子痫前期或宫内生长受限等,总结目前有关脂肪因子水平及其在胎盘中作用的知识。
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引用次数: 0
期刊
Advances in clinical chemistry
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