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RNA biomarkers in cancer therapeutics: The promise of personalized oncology. 癌症治疗中的 RNA 生物标记物:个性化肿瘤学的前景。
Pub Date : 2024-01-01 Epub Date: 2024-06-21 DOI: 10.1016/bs.acc.2024.06.003
Hector Katifelis, Maria Gazouli

Cancer therapy is a rapidly evolving and constantly expanding field. Current approaches include surgery, conventional chemotherapy and novel biologic agents as in immunotherapy, that together compose a wide armamentarium. The plethora of choices can, however, be clinically challenging in prescribing the most suitable treatment for any given patient. Fortunately, biomarkers can greatly facilitate the most appropriate selection. In recent years, RNA-based biomarkers have proven most promising. These molecules that range from small noncoding RNAs to protein coding gene transcripts can be valuable in cancer management and especially in cancer therapeutics. Compared to their DNA counterparts which are stable throughout treatment, RNA-biomarkers are dynamic. This allows prediction of success prior to treatment start and can identify alterations in expression that could reflect response. Moreover, improved nucleic acid technology allows RNA to be extracted from practically every biofluid/matrix and evaluated with exceedingly high analytic sensitivity. In addition, samples are largely obtained by minimally invasive procedures and as such can be used serially to assess treatment response real-time. This chapter provides the reader insight on currently known RNA biomarkers, the latest research employing Artificial Intelligence in the identification of such molecules and in clinical decisions driving forward the era of personalized oncology.

癌症治疗是一个快速发展和不断扩展的领域。目前的治疗方法包括手术、传统化疗和免疫疗法中的新型生物制剂,它们共同组成了一个庞大的治疗体系。然而,过多的选择可能会给临床带来挑战,难以为特定患者开出最合适的治疗处方。幸运的是,生物标志物可以极大地帮助人们做出最合适的选择。近年来,基于 RNA 的生物标志物被证明是最有前途的。从小型非编码 RNA 到蛋白编码基因转录本,这些分子在癌症管理,特别是癌症治疗中都很有价值。与在整个治疗过程中保持稳定的 DNA 类似物相比,RNA 生物标记物是动态的。这样就可以在治疗开始前预测治疗的成功与否,并能识别反映反应的表达变化。此外,经过改进的核酸技术可以从几乎所有生物流体/基质中提取 RNA,并以极高的分析灵敏度进行评估。此外,大部分样本都是通过微创手术获得的,因此可连续用于实时评估治疗反应。本章将向读者深入介绍目前已知的 RNA 生物标记物、采用人工智能识别此类分子的最新研究以及推动个性化肿瘤学时代到来的临床决策。
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引用次数: 0
Preface. 序言
Pub Date : 2024-01-01 DOI: 10.1016/S0065-2423(24)00077-5
Gregory S Makowski
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引用次数: 0
Adipokines in pregnancy. 孕期脂肪因子
Pub Date : 2024-01-01 Epub Date: 2024-05-15 DOI: 10.1016/bs.acc.2024.04.006
Monika Dawid, Karolina Pich, Ewa Mlyczyńska, Natalia Respekta-Długosz, Dominka Wachowska, Aleksandra Greggio, Oliwia Szkraba, Patrycja Kurowska, Agnieszka Rak

Reproductive success consists of a sequential events chronology, starting with the ovum fertilization, implantation of the embryo, placentation, and cellular processes like proliferation, apoptosis, angiogenesis, endocrinology, or metabolic changes, which taken together finally conduct the birth of healthy offspring. Currently, many factors are known that affect the regulation and proper maintenance of pregnancy in humans, domestic animals, or rodents. Among the determinants of reproductive success should be distinguished: the maternal microenvironment, genes, and proteins as well as numerous pregnancy hormones that regulate the most important processes and ensure organism homeostasis. It is well known that white adipose tissue, as the largest endocrine gland in our body, participates in the synthesis and secretion of numerous hormones belonging to the adipokine family, which also may regulate the course of pregnancy. Unfortunately, overweight and obesity lead to the expansion of adipose tissue in the body, and its excess in both women and animals contributes to changes in the synthesis and release of adipokines, which in turn translates into dramatic changes during pregnancy, including those taking place in the organ that is crucial for the proper progress of pregnancy, i.e. the placenta. In this chapter, we are summarizing the current knowledge about levels of adipokines and their role in the placenta, taking into account the physiological and pathological conditions of pregnancy, e.g. gestational diabetes mellitus, preeclampsia, or intrauterine growth restriction in humans, domestic animals, and rodents.

从卵子受精、胚胎植入、胎盘形成到细胞增殖、凋亡、血管生成、内分泌或新陈代谢变化等过程,这些过程共同作用,最终孕育出健康的后代。目前,已知有许多因素会影响人类、家畜或啮齿动物妊娠的调节和正常维持。生殖成功的决定因素包括:母体微环境、基因、蛋白质以及多种妊娠激素,它们能调节最重要的过程并确保机体平衡。众所周知,白色脂肪组织是人体最大的内分泌腺,参与合成和分泌属于脂肪因子家族的多种激素,这些激素也可能调节妊娠过程。不幸的是,超重和肥胖会导致体内脂肪组织的扩张,而妇女和动物体内脂肪组织的过剩又会导致脂肪因子的合成和释放发生变化,进而转化为妊娠期间的剧烈变化,包括对妊娠正常进行至关重要的器官(即胎盘)中发生的变化。在本章中,我们将结合人类、家畜和啮齿类动物妊娠期的生理和病理状况,如妊娠糖尿病、子痫前期或宫内生长受限等,总结目前有关脂肪因子水平及其在胎盘中作用的知识。
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引用次数: 0
Pleiotropic functions and clinical importance of circulating HDL-PON1 complex. 循环 HDL-PON1 复合物的多效应功能和临床重要性。
Pub Date : 2024-01-01 Epub Date: 2024-05-14 DOI: 10.1016/bs.acc.2024.04.003
Abdolkarim Mahrooz

High density lipoprotein (HDL) functions are mostly mediated through a complex proteome, particularly its enzymes. HDL can provide a scaffold for the assembly of several proteins that affect each other's function. HDL particles, particularly small, dense HDL3, are rich in paraoxonase 1 (PON1), which is an important enzyme in the functionality of HDL, so the antioxidant and antiatherogenic properties of HDL are largely attributed to this enzyme. There is an increasing need to represent a valid, reproducible, and reliable method to assay HDL function in routine clinical laboratories. In this context, HDL-associated proteins may be key players; notably PON1 activity (its arylesterase activity) may be a proper candidate because its decreased activity can be considered an important risk factor for HDL dysfunctionality. Of note, automated methods have been developed for the measurement of serum PON1 activity that facilitates its assay in large sample numbers. Arylesterase activity is proposed as a preferred activity among the different activities of PON1 for its assay in epidemiological studies. The binding of PON1 to HDL is critical for the maintenance of its activity and it appears apolipoprotein A-I plays an important role in HDL-PON1 interaction as well as in the biochemical and enzymatic properties of PON1. The interrelationships between HDL, PON1, and HDL's other components are complex and incompletely understood. The purpose of this review is to discuss biochemical and clinical evidence considering the interactions of PON1 with HDL and the role of this enzyme as an appropriate biomarker for HDL function as well as a potential therapeutic target.

高密度脂蛋白(HDL)的功能主要通过复杂的蛋白质组,特别是其酶来介导。高密度脂蛋白可为多种蛋白质的组装提供支架,而这些蛋白质之间的功能又会相互影响。高密度脂蛋白颗粒,尤其是小而致密的高密度脂蛋白3,富含对氧合酶1(PON1),这是高密度脂蛋白功能中的一种重要酶,因此高密度脂蛋白的抗氧化和抗动脉粥样硬化特性主要归功于这种酶。常规临床实验室越来越需要一种有效、可重复、可靠的方法来检测高密度脂蛋白的功能。在这种情况下,高密度脂蛋白相关蛋白可能是关键因素;特别是 PON1 活性(其芳酯酶活性)可能是一个合适的候选指标,因为其活性降低可被视为高密度脂蛋白功能障碍的一个重要风险因素。值得注意的是,目前已开发出自动测量血清 PON1 活性的方法,这有助于对大量样本进行检测。在流行病学研究中,PON1 的不同活性中,芳基酯酶活性是首选的检测活性。PON1 与高密度脂蛋白的结合对维持其活性至关重要,看来脂蛋白 A-I 在高密度脂蛋白与 PON1 的相互作用以及 PON1 的生化和酶特性中发挥着重要作用。高密度脂蛋白、PON1 和高密度脂蛋白其他成分之间的相互关系十分复杂,人们对它们的了解也不全面。本综述旨在讨论考虑 PON1 与 HDL 相互作用的生化和临床证据,以及该酶作为 HDL 功能的适当生物标志物和潜在治疗目标的作用。
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引用次数: 0
Biochemical diagnosis of congenital disorders of glycosylation. 先天性糖基化紊乱的生化诊断。
Pub Date : 2024-01-01 Epub Date: 2024-04-16 DOI: 10.1016/bs.acc.2024.03.001
Alexandre Raynor, Walid Haouari, Elodie Lebredonchel, François Foulquier, François Fenaille, Arnaud Bruneel

Congenital disorders of glycosylation (CDG) are one of the fastest growing groups of inborn errors of metabolism, comprising over 160 described diseases to this day. CDG are characterized by a dysfunctional glycosylation process, with molecular defects localized in the cytosol, the endoplasmic reticulum, or the Golgi apparatus. Depending on the CDG, N-glycosylation, O-glycosylation and/or glycosaminoglycan synthesis can be affected. Various proteins, lipids, and glycosylphosphatidylinositol anchors bear glycan chains, with potential impacts on their folding, targeting, secretion, stability, and thus, functionality. Therefore, glycosylation defects can have diverse and serious clinical consequences. CDG patients often present with a non-specific, multisystemic syndrome including neurological involvement, growth delay, hepatopathy and coagulopathy. As CDG are rare diseases, and typically lack distinctive clinical signs, biochemical and genetic testing bear particularly important and complementary diagnostic roles. Here, after a brief introduction on glycosylation and CDG, we review historical and recent findings on CDG biomarkers and associated analytical techniques, with a particular emphasis on those with relevant use in the specialized clinical chemistry laboratory. We provide the reader with insights and methods which may help them properly assist the clinician in navigating the maze of glycosylation disorders.

先天性糖基化障碍(CDG)是先天性代谢错误中增长最快的一类,至今已描述了160多种疾病。先天性糖基化障碍的特点是糖基化过程失调,分子缺陷位于细胞膜、内质网或高尔基体。根据 CDG 的不同,N-糖基化、O-糖基化和/或糖胺聚糖的合成都会受到影响。各种蛋白质、脂类和糖基磷脂酰肌醇锚都带有糖链,可能会影响其折叠、靶向、分泌、稳定性,进而影响其功能。因此,糖基化缺陷会产生多种严重的临床后果。CDG 患者通常表现为非特异性的多系统综合征,包括神经系统受累、生长发育迟缓、肝病和凝血功能障碍。由于 CDG 是罕见疾病,通常缺乏明显的临床症状,因此生化和基因检测在诊断中起着尤为重要和互补的作用。在简要介绍糖基化和 CDG 之后,我们将回顾 CDG 生物标记物和相关分析技术的历史和最新研究成果,并特别强调在专业临床化学实验室中的相关应用。我们为读者提供的见解和方法可以帮助他们正确地协助临床医生驾驭糖基化紊乱的迷宫。
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引用次数: 0
Preface. 序言
Pub Date : 2024-01-01 DOI: 10.1016/S0065-2423(24)00124-0
Gregory S Makowski
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引用次数: 0
Volatile organic compounds in cancer and exhaled breath detection technology. 癌症中的挥发性有机化合物和呼出气体检测技术。
Pub Date : 2024-01-01 Epub Date: 2024-07-04 DOI: 10.1016/bs.acc.2024.06.012
Xinyuan Zhou, Manqing Qi, Mingqi Tang, Shifang Wen, Zhenjie Xue, Tie Wang

The detection of volatile organic compounds (VOCs) in breath has become a potential method for early cancer screening. Although this approach has attracted increasing attention from the both scientific and medical communities, it has not received appreciable traction in the clinical setting. There are two main obstacles. One involves the identification of specific biomarkers or combinations thereof especially in early cancer. The other is the lack the specialized equipment for breath analysis having the appropriate sensitivity and specificity. Using metabolomics, this chapter examines the research strategies involving gas biomarkers in cancer patient breath, cancer cell gas metabolites and synthetic biomarkers. We briefly explore gas biomarkers of seven cancers and introduce principles of detection and clinical application. Large analytical instruments and small sensor technology are highlighted. Challenges to VOC analysis are presented including clinical use, extraction and detection, miniaturization efforts and examination of metabolic VOC pathways. Finally, VOCs in cancer and in exhaled breath detection technology are summarized and future prospects explored.

检测呼气中的挥发性有机化合物 (VOC) 已成为癌症早期筛查的一种潜在方法。虽然这种方法已引起科学界和医学界越来越多的关注,但在临床环境中还没有得到明显的推广。主要障碍有两个。其一是识别特定的生物标志物或其组合,特别是在早期癌症中。另一个障碍是缺乏具有适当灵敏度和特异性的呼吸分析专用设备。本章利用代谢组学研究癌症患者呼气中的气体生物标记物、癌细胞气体代谢物和合成生物标记物的研究策略。我们简要探讨了七种癌症的气体生物标记物,并介绍了检测原理和临床应用。重点介绍了大型分析仪器和小型传感器技术。介绍了挥发性有机化合物分析面临的挑战,包括临床应用、萃取和检测、微型化努力以及挥发性有机化合物代谢途径的检查。最后,总结了癌症中的挥发性有机化合物和呼出气体检测技术,并探讨了未来前景。
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引用次数: 0
PTSD biomarkers: Neuroendocrine signaling to epigenetic variants. 创伤后应激障碍生物标志物:从神经内分泌信号到表观遗传变异。
Pub Date : 2024-01-01 Epub Date: 2024-06-25 DOI: 10.1016/bs.acc.2024.06.004
Alyssa Sbisa, Kristin Graham, Ellie Lawrence-Wood, Alexander C McFarlane, Catherine Toben

Posttraumatic stress disorder (PTSD) is characterized by exposure to traumatic events and involves symptom domains such as intrusive thoughts, avoidant behaviors, negative mood, and cognitive dysfunction. The disorder can be chronic and debilitating, and the heterogenous nature and varied presentation of PTSD has afforded difficulty in determining efficacious treatment. The ability to identify biomarkers for PTSD risk, prognosis, or for the purposes of treatment, would be highly valuable. There is evidence for peripheral biomarkers related to the hypothalamic-pituitary-adrenal axis, the immune system, neurotransmitters and neurohormones, while genome and epigenome wide association studies have identified genes of interest relating to neurocircuitry, monoaminergic function, and the immune system. Importantly, however, reproducibility is a persistent issue. Considerations for future research include the need for well-powered and well-designed studies to determine directionality, in addition to considering biomarkers as they relate to symptom domains and the spectrum of symptom severity rather than dichotomous diagnostic outcomes. We conclude by recommending the staging of biological processes and PTSD symptoms, from subsyndromal to chronic, which could eventually facilitate selection of personalized treatment interventions for individuals with PTSD, in addition to serving as a future framework for biomarker data.

创伤后应激障碍(PTSD)的特点是受到创伤事件的影响,症状包括侵入性思维、回避行为、负面情绪和认知功能障碍。创伤后应激障碍是一种慢性疾病,会使人衰弱,而且创伤后应激障碍的性质和表现多种多样,这给确定有效的治疗方法带来了困难。如果能够确定创伤后应激障碍风险、预后或治疗目的的生物标志物,将非常有价值。有证据表明,外周生物标志物与下丘脑-垂体-肾上腺轴、免疫系统、神经递质和神经激素有关,而基因组和表观基因组关联研究则发现了与神经回路、单胺能功能和免疫系统有关的相关基因。但重要的是,可重复性一直是个问题。未来研究的考虑因素包括:除了考虑生物标志物与症状领域和症状严重程度范围的关系,而不是二分法的诊断结果外,还需要进行动力充足、设计合理的研究以确定方向性。最后,我们建议对生物过程和创伤后应激障碍症状进行分期,从亚症状期到慢性期,这最终有助于为创伤后应激障碍患者选择个性化的治疗干预措施,同时也可作为生物标志物数据的未来框架。
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引用次数: 0
Cardiac natriuretic peptides. 心钠素。
Pub Date : 2024-01-01 Epub Date: 2024-06-29 DOI: 10.1016/bs.acc.2024.06.009
Theodor W Shalmi, Anne Sophie B Jensen, Jens P Goetze

Over the last four decades, cardiac natriuretic peptides have changed our understanding of patients with chronic heart failure. From the discovery of the heart as an endocrine organ with its own hormones and receptors, the biochemistry and physiology of the system have been translated into useful biomarkers and drug targets in cardiovascular disease. The purpose of this review is to provide medical researchers not working in the field with a simple introduction to the system and its molecular components, its quantitative methods, and its physiology and pathophysiology. The hope is that this overview may help to broaden the knowledge of the endocrine heart with the intent that researchers in other areas of medical research will be inspired to seek new facets of the system, both in translational science and in clinical practice.

在过去的四十年里,心钠素改变了我们对慢性心力衰竭患者的认识。从发现心脏是一个具有自身激素和受体的内分泌器官开始,该系统的生物化学和生理学已被转化为心血管疾病的有用生物标志物和药物靶点。本综述旨在向非该领域的医学研究人员简单介绍该系统及其分子成分、定量方法及其生理学和病理生理学。希望这篇综述能有助于拓宽人们对心脏内分泌的认识,从而激励其他医学研究领域的研究人员在转化科学和临床实践中寻找该系统的新面貌。
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引用次数: 0
Preface. 序言
Pub Date : 2024-01-01 DOI: 10.1016/S0065-2423(24)00113-6
Gregory S Makowski
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引用次数: 0
期刊
Advances in clinical chemistry
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