Qiujie Zhou, CHE-WEI Lin, Jin-Hong Dai, R. Zhou, Y. Liu
Phyllagathis Blume and Bredia Blume (Sonerileae s.l., Melastomataceae) are two closely related Asian genera with similar morphology and overlapping geographical range. Their generic circumscription and phylogenetic relationships are far from fully understood. We present here a molecular phylogenetic investigation for the two genera using nuclear ribosomal internal transcribed spacer and chloroplast (trnV‐trnM) sequence data. Seventeen genera of Sonerileae s.l. were included in the analyses, with Phyllagathis and Bredia densely sampled to cover their geographical range and morphological diversity. We identified 14 well supported species clusters within Sonerileae s.l.–Medinilla. Phylogenetic analyses together with reconstruction of morphological characters clearly indicated the taxonomic mess in generic delimitation of Sonerileae s.l. Many of the characters traditionally used in generic delimitation were highly homoplasious. Bredia and Phyllagathis, as well as Allomorphia, Anerincleistus, Fordiophyton, and Oxyspora, were revealed to be non‐monophyletic. Bredia, as currently defined, contains two groups of species with different phylogenetic affiliations. Bredia should be recircumscribed to exclude the Bredia–Phyllagathis clade I and accommodate the Bredia–Phyllagathis clade II as the type of the genus is included in the latter clade. Most species sampled in Phyllagathis spread across eight well supported clades throughout the phylogenetic tree. The type of Phyllagathis showed no close affiliation with other members of Phyllagathis nor its putative relatives. Phyllagathis, as presently circumscribed, is heterogeneous, encompassing multiple evolutionary lineages. As sequence data of nuclear ribosomal internal transcribed spacer and chloroplast trnV‐trnM failed to resolve the phylogenetic relationships among these lineages, the formal taxonomic adjustment of Phyllagathis is postponed until further evidence can be gathered.
{"title":"Exploring the generic delimitation of Phyllagathis and Bredia (Melastomataceae): A combined nuclear and chloroplast DNA analysis","authors":"Qiujie Zhou, CHE-WEI Lin, Jin-Hong Dai, R. Zhou, Y. Liu","doi":"10.1111/jse.12451","DOIUrl":"https://doi.org/10.1111/jse.12451","url":null,"abstract":"Phyllagathis Blume and Bredia Blume (Sonerileae s.l., Melastomataceae) are two closely related Asian genera with similar morphology and overlapping geographical range. Their generic circumscription and phylogenetic relationships are far from fully understood. We present here a molecular phylogenetic investigation for the two genera using nuclear ribosomal internal transcribed spacer and chloroplast (trnV‐trnM) sequence data. Seventeen genera of Sonerileae s.l. were included in the analyses, with Phyllagathis and Bredia densely sampled to cover their geographical range and morphological diversity. We identified 14 well supported species clusters within Sonerileae s.l.–Medinilla. Phylogenetic analyses together with reconstruction of morphological characters clearly indicated the taxonomic mess in generic delimitation of Sonerileae s.l. Many of the characters traditionally used in generic delimitation were highly homoplasious. Bredia and Phyllagathis, as well as Allomorphia, Anerincleistus, Fordiophyton, and Oxyspora, were revealed to be non‐monophyletic. Bredia, as currently defined, contains two groups of species with different phylogenetic affiliations. Bredia should be recircumscribed to exclude the Bredia–Phyllagathis clade I and accommodate the Bredia–Phyllagathis clade II as the type of the genus is included in the latter clade. Most species sampled in Phyllagathis spread across eight well supported clades throughout the phylogenetic tree. The type of Phyllagathis showed no close affiliation with other members of Phyllagathis nor its putative relatives. Phyllagathis, as presently circumscribed, is heterogeneous, encompassing multiple evolutionary lineages. As sequence data of nuclear ribosomal internal transcribed spacer and chloroplast trnV‐trnM failed to resolve the phylogenetic relationships among these lineages, the formal taxonomic adjustment of Phyllagathis is postponed until further evidence can be gathered.","PeriodicalId":101317,"journal":{"name":"JOURNAL OF SYSTEMATICS AND EVOLUTION","volume":"7 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2018-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82002490","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chuan Chen, Li Zheng, Qing Ma, Wenbin Zhou, Yin Lu, Yunpeng Zhao, C. Fu
As a medicinal herb, Atractylodes macrocephala Koidz. experienced centuries of cultivation in China, and germplasm resources of all cultivated populations have degraded over time as a consequence of domestication processes. This study used chloroplast DNA and microsatellites to clarify not only the effects of domestication on population genetics, but also determine the geographic origins of landraces. The results revealed that cultivated populations (except the “Pingzhu” landrace) showed higher genetic diversity than their wild counterparts and low levels of genetic differentiation occurred between cultivated and wild groups. Furthermore, STRUCTURE and UPGMA analyses grouped all wild populations into three genotypic clusters, two of which (in Shaanxi and Hunan Province) shared the same gene pool with cultivated A. macrocephala, suggesting that wild populations in Central China have been involved in the origin of cultivated A. macrocephala. Moreover, the wild population from Qimen, Anhui Province and the cultivated “Pingzhu” landrace harbor unique gene pools and rare alleles that could be useful in future breeding efforts. This large‐scale analysis of population genetics on a medicinal herb that has a centuries‐long history of human‐mediated selection will facilitate utilization and conservation of the valuable genetic resources of medicinal species.
{"title":"Impacts of domestication on population genetics of a traditional Chinese medicinal herb, Atractylodes macrocephala (Asteraceae)","authors":"Chuan Chen, Li Zheng, Qing Ma, Wenbin Zhou, Yin Lu, Yunpeng Zhao, C. Fu","doi":"10.1111/jse.12446","DOIUrl":"https://doi.org/10.1111/jse.12446","url":null,"abstract":"As a medicinal herb, Atractylodes macrocephala Koidz. experienced centuries of cultivation in China, and germplasm resources of all cultivated populations have degraded over time as a consequence of domestication processes. This study used chloroplast DNA and microsatellites to clarify not only the effects of domestication on population genetics, but also determine the geographic origins of landraces. The results revealed that cultivated populations (except the “Pingzhu” landrace) showed higher genetic diversity than their wild counterparts and low levels of genetic differentiation occurred between cultivated and wild groups. Furthermore, STRUCTURE and UPGMA analyses grouped all wild populations into three genotypic clusters, two of which (in Shaanxi and Hunan Province) shared the same gene pool with cultivated A. macrocephala, suggesting that wild populations in Central China have been involved in the origin of cultivated A. macrocephala. Moreover, the wild population from Qimen, Anhui Province and the cultivated “Pingzhu” landrace harbor unique gene pools and rare alleles that could be useful in future breeding efforts. This large‐scale analysis of population genetics on a medicinal herb that has a centuries‐long history of human‐mediated selection will facilitate utilization and conservation of the valuable genetic resources of medicinal species.","PeriodicalId":101317,"journal":{"name":"JOURNAL OF SYSTEMATICS AND EVOLUTION","volume":"43 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2018-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81735039","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lin‐Bo Jia, T. Su, Y. Huang, Feixiang Wu, T. Deng, Zhekun Zhou
Cedrelospermum Saporta is an extinct genus in the Ulmaceae with abundant fossil records in North America and Europe. However, so far, fossil records of this genus from Asia are sparse, which limits the interpretations of the morphological evolution and biogeographical history of the genus. Here we report well‐preserved fruits (Cedrelospermum tibeticum sp. nov.) and a leaf (Cedrelospermum sp.) of Cedrelospermum from the upper Oligocene Lunpola and Nyima basins in the Qinghai–Tibetan Plateau (QTP). This is the first fossil record of Cedrelospermum in the QTP, showing that this genus grew in this region during the late Oligocene. Cedrelospermum tibeticum fruits are double‐winged, morphologically similar to the Eocene and Oligocene double‐winged Cedrelospermum species from North America. This supports the hypothesis that Cedrelospermum migrated to Asia from North America by way of the Bering Land Bridge. Given that Cedrelospermum was a typical element of Northern Hemispheric flora in the Paleogene and Neogene, the presence of this genus indicates that the central region of the QTP was phytogeographically linked with other parts of the Northern Hemisphere during the late Oligocene. The morphological observations of C. tibeticum fruits and other double‐winged Cedrelospermum fruits suggest an evolutionary trend from obtuse to acute apex for the primary wing. Cedrelospermum tibeticum likely had warm and wet climatic requirements. This type of an environment possibly existed in the central QTP in the late Oligocene, thereby supporting the survival of C. tibeticum.
{"title":"First fossil record of Cedrelospermum (Ulmaceae) from the Qinghai–Tibetan Plateau: Implications for morphological evolution and biogeography","authors":"Lin‐Bo Jia, T. Su, Y. Huang, Feixiang Wu, T. Deng, Zhekun Zhou","doi":"10.1111/jse.12435","DOIUrl":"https://doi.org/10.1111/jse.12435","url":null,"abstract":"Cedrelospermum Saporta is an extinct genus in the Ulmaceae with abundant fossil records in North America and Europe. However, so far, fossil records of this genus from Asia are sparse, which limits the interpretations of the morphological evolution and biogeographical history of the genus. Here we report well‐preserved fruits (Cedrelospermum tibeticum sp. nov.) and a leaf (Cedrelospermum sp.) of Cedrelospermum from the upper Oligocene Lunpola and Nyima basins in the Qinghai–Tibetan Plateau (QTP). This is the first fossil record of Cedrelospermum in the QTP, showing that this genus grew in this region during the late Oligocene. Cedrelospermum tibeticum fruits are double‐winged, morphologically similar to the Eocene and Oligocene double‐winged Cedrelospermum species from North America. This supports the hypothesis that Cedrelospermum migrated to Asia from North America by way of the Bering Land Bridge. Given that Cedrelospermum was a typical element of Northern Hemispheric flora in the Paleogene and Neogene, the presence of this genus indicates that the central region of the QTP was phytogeographically linked with other parts of the Northern Hemisphere during the late Oligocene. The morphological observations of C. tibeticum fruits and other double‐winged Cedrelospermum fruits suggest an evolutionary trend from obtuse to acute apex for the primary wing. Cedrelospermum tibeticum likely had warm and wet climatic requirements. This type of an environment possibly existed in the central QTP in the late Oligocene, thereby supporting the survival of C. tibeticum.","PeriodicalId":101317,"journal":{"name":"JOURNAL OF SYSTEMATICS AND EVOLUTION","volume":"55 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2018-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79677184","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Y. Huang, Hai Zhu, A. Momohara, Lin‐Bo Jia, Zhekun Zhou
The subfamily Rosoideae Focke (Rosaceae) has a good fossil record in the Northern Hemisphere, but these fossil records are confined mainly to a few genera, whereas the majority, in particular those with herbaceous members, are still under‐represented. In this study, we describe new fruit fossils of Rosoideae, including Fragaria achenes and Rubus endocarps, from the late Pliocene of northwestern Yunnan, Southwest China. These fossils add new accounts to the fossil archive of Rosoideae and provide the first fossil record of Fragaria in East Asia. The new fossil findings provide a historical backdrop for the modern diversity and distribution of the subfamily in northwestern Yunnan, a topographically complex area accommodating a high diversity for many plant groups. Our Rubus fossils, in combination with other nearby coeval occurrences of the genus, suggest that Rubus was already establishing its modern diversity in northwestern Yunnan during the late Pliocene. This finding enriches our knowledge of the post‐Neogene diversification of flowering plants in northwestern Yunnan, which is thought to be largely driven by dramatic mountain uplifts and environmental complications associated with the southeastern extension of the Tibetan Plateau.
{"title":"Fruit fossils of Rosoideae (Rosaceae) from the late Pliocene of northwestern Yunnan, Southwest China","authors":"Y. Huang, Hai Zhu, A. Momohara, Lin‐Bo Jia, Zhekun Zhou","doi":"10.1111/jse.12443","DOIUrl":"https://doi.org/10.1111/jse.12443","url":null,"abstract":"The subfamily Rosoideae Focke (Rosaceae) has a good fossil record in the Northern Hemisphere, but these fossil records are confined mainly to a few genera, whereas the majority, in particular those with herbaceous members, are still under‐represented. In this study, we describe new fruit fossils of Rosoideae, including Fragaria achenes and Rubus endocarps, from the late Pliocene of northwestern Yunnan, Southwest China. These fossils add new accounts to the fossil archive of Rosoideae and provide the first fossil record of Fragaria in East Asia. The new fossil findings provide a historical backdrop for the modern diversity and distribution of the subfamily in northwestern Yunnan, a topographically complex area accommodating a high diversity for many plant groups. Our Rubus fossils, in combination with other nearby coeval occurrences of the genus, suggest that Rubus was already establishing its modern diversity in northwestern Yunnan during the late Pliocene. This finding enriches our knowledge of the post‐Neogene diversification of flowering plants in northwestern Yunnan, which is thought to be largely driven by dramatic mountain uplifts and environmental complications associated with the southeastern extension of the Tibetan Plateau.","PeriodicalId":101317,"journal":{"name":"JOURNAL OF SYSTEMATICS AND EVOLUTION","volume":"71 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2018-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73824197","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xin Ding, Jianhua Xiao, Lang Li, J. Conran, Jie Li
Species delimitation is fundamental to conservation and sustainable use of economically important forest tree species. However, the delimitation of two highly valued gold‐thread nanmu species (Phoebe bournei (Hemsl.) Yang and P. zhennan S. K. Lee & F. N. Wei) has been confusing and debated. To address this problem, we integrated morphology and restriction site‐associated DNA sequencing (RAD‐seq) to define their species boundaries. We obtained consistent results from the two datasets, supporting two distinct lineages corresponding to P. bournei and P. zhennan. In P. bournei, higher order leaf venation is more prominent, petioles are thicker, and leaf apex angle is narrower, compared to P. zhennan. Both datasets also revealed that the former putative P. bournei populations from northeastern Guizhou belong to P. zhennan. The two species are now distinct in distributions except in the Wuling Mountains, where they overlap. Phoebe bournei occurs mainly in central Fujian, southern Jiangxi, the Nanling Mountains, and the Wuling Mountains, whereas P. zhennan is found in the adjoining eastern regions of the Qionglai Mountains, the southern Sichuan hills, and the Wuling Mountains. The re‐delimitation of P. bournei and P. zhennan and clarification of their ranges provide a better scientific basis guiding the conservation and sustainable utilization of these tree species.
物种划界是保护和可持续利用重要经济树种的基础。然而，两个极具价值的金线楠木种(Phoebe bournei (Hemsl.))的划界Yang和P. zhennan, S. K. Lee和F. N. Wei)一直令人困惑和争论。为了解决这个问题，我们整合了形态学和限制性内切位点相关DNA测序(RAD - seq)来确定它们的物种边界。我们从两个数据集获得了一致的结果，支持两个不同的谱系对应于P. bournei和P. zhennan。与真南相比，白杨高阶叶脉更突出，叶柄更粗，叶尖角更窄。这两组数据还表明，贵州东北部以前推定的布氏伪种属于镇南伪种。这两个物种现在在分布上是不同的，除了在武陵山，它们在那里重叠。菲比伯内主要分布在福建中部、江西南部、南岭山脉和武陵山，而P. zhennan则分布在邛崃山脉东部、川南丘陵和武陵山的毗邻地区。重新划分红枫和真南红枫的分布范围，为指导红枫和真南红枫的保护和可持续利用提供了更好的科学依据。
{"title":"Congruent species delimitation of two controversial gold‐thread nanmu tree species based on morphological and restriction site‐associated DNA sequencing data","authors":"Xin Ding, Jianhua Xiao, Lang Li, J. Conran, Jie Li","doi":"10.1111/jse.12433","DOIUrl":"https://doi.org/10.1111/jse.12433","url":null,"abstract":"Species delimitation is fundamental to conservation and sustainable use of economically important forest tree species. However, the delimitation of two highly valued gold‐thread nanmu species (Phoebe bournei (Hemsl.) Yang and P. zhennan S. K. Lee & F. N. Wei) has been confusing and debated. To address this problem, we integrated morphology and restriction site‐associated DNA sequencing (RAD‐seq) to define their species boundaries. We obtained consistent results from the two datasets, supporting two distinct lineages corresponding to P. bournei and P. zhennan. In P. bournei, higher order leaf venation is more prominent, petioles are thicker, and leaf apex angle is narrower, compared to P. zhennan. Both datasets also revealed that the former putative P. bournei populations from northeastern Guizhou belong to P. zhennan. The two species are now distinct in distributions except in the Wuling Mountains, where they overlap. Phoebe bournei occurs mainly in central Fujian, southern Jiangxi, the Nanling Mountains, and the Wuling Mountains, whereas P. zhennan is found in the adjoining eastern regions of the Qionglai Mountains, the southern Sichuan hills, and the Wuling Mountains. The re‐delimitation of P. bournei and P. zhennan and clarification of their ranges provide a better scientific basis guiding the conservation and sustainable utilization of these tree species.","PeriodicalId":101317,"journal":{"name":"JOURNAL OF SYSTEMATICS AND EVOLUTION","volume":"7 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2018-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82861294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Temporal and spatial changes of ten conifer genera that are endemic to East Asia were analyzed based on fossil data from humid temperate forests in the Japanese Islands and Korean Peninsula to elucidate the phytogeographic history, and to understand differences between those genera eliminated from the Japanese Islands and those that remained extant. All these genera, except for Thujopsis, have existed in the area since the Paleogene and remained in the Japanese islands after initial separation from the continent at the early–middle Miocene. Fossil representatives of locally extinct six genera have tendencies to adapt to wider ranges of climatic conditions than their modern relatives. Metasequoia, Glyptostrobus, and Taiwania began to change their distributions since the late Miocene possibly through habitat partitioning. Keteleeria, Pseudolarix, and Cunninghamia appeared to have expanded their habitat toward warmer conditions during the mid‐Miocene Climatic Optimum and then became restricted to warmer forest vegetation by the end of Pliocene. Overall changes in their distribution can be explained by climatic effects. On the contrary, three genera endemic to Japan (Sciadopitys, Cryptomeria, and Thujopsis) followed clearly different trends from the others. Cryptomeria and Thujopsis were especially adapted to cooler‐temperate climate and they retained their habitat areas in the northern part of Japan. During the late Miocene–Pliocene, the islands connected with the Eurasian continent again, which probably acted as a corridor for warm‐adapted genera to disperse southwest. Current data suggest that ecological requirements of each genus might be essential to determine whether they could survive on the Japanese Islands.
{"title":"Oligocene–Neogene fossil history of Asian endemic conifer genera in Japan and Korea","authors":"Atsushi Yabe, E. Jeong, Kyungsik Kim, K. Uemura","doi":"10.1111/jse.12445","DOIUrl":"https://doi.org/10.1111/jse.12445","url":null,"abstract":"Temporal and spatial changes of ten conifer genera that are endemic to East Asia were analyzed based on fossil data from humid temperate forests in the Japanese Islands and Korean Peninsula to elucidate the phytogeographic history, and to understand differences between those genera eliminated from the Japanese Islands and those that remained extant. All these genera, except for Thujopsis, have existed in the area since the Paleogene and remained in the Japanese islands after initial separation from the continent at the early–middle Miocene. Fossil representatives of locally extinct six genera have tendencies to adapt to wider ranges of climatic conditions than their modern relatives. Metasequoia, Glyptostrobus, and Taiwania began to change their distributions since the late Miocene possibly through habitat partitioning. Keteleeria, Pseudolarix, and Cunninghamia appeared to have expanded their habitat toward warmer conditions during the mid‐Miocene Climatic Optimum and then became restricted to warmer forest vegetation by the end of Pliocene. Overall changes in their distribution can be explained by climatic effects. On the contrary, three genera endemic to Japan (Sciadopitys, Cryptomeria, and Thujopsis) followed clearly different trends from the others. Cryptomeria and Thujopsis were especially adapted to cooler‐temperate climate and they retained their habitat areas in the northern part of Japan. During the late Miocene–Pliocene, the islands connected with the Eurasian continent again, which probably acted as a corridor for warm‐adapted genera to disperse southwest. Current data suggest that ecological requirements of each genus might be essential to determine whether they could survive on the Japanese Islands.","PeriodicalId":101317,"journal":{"name":"JOURNAL OF SYSTEMATICS AND EVOLUTION","volume":"100 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2018-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80352870","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yan Wu, Jianhua Jin, Nan Li, Hui He, Ting Chen, Xiao-Yan Liu
The genus Calocedrus Kurz is characterized by flattened branches covered with decussate and dimorphic leaves. In this study, we describe fossil foliage of Calocedrus discovered in the Shangcun Formation (early Oligocene) of the Maoming Basin, South China. The fossils have wedge‐shaped branchlet segments and scale‐like strongly dimorphic leaves, similar to the fossil species Calocedrus lantenoisi (Laurent) Tao. There have been no detailed studies of the morphological features and cuticle structures of C. lantenoisi. Therefore, a newly emended diagnosis of the species C. lantenoisi is given based on a detailed study of leaf morphology and cuticular characters exhibited by the Maoming fossils. This is one of the earliest fossil records of Calocedrus in the world, providing additional evidence for the early biogeographic history of this genus and supporting the inference that eastern Asian Calocedrus is primitive among all the living species. The extant species of Calocedrus are mainly distributed in mountainous regions. On the basis of the “nearest living relative” analysis, we propose that the Maoming Basin was adjacent to a mountainous region during the early Oligocene.
{"title":"Early Oligocene Calocedrus (Cupressaceae) from the Maoming Basin, South China, and its paleogeographic and paleoclimatic implications","authors":"Yan Wu, Jianhua Jin, Nan Li, Hui He, Ting Chen, Xiao-Yan Liu","doi":"10.1111/jse.12424","DOIUrl":"https://doi.org/10.1111/jse.12424","url":null,"abstract":"The genus Calocedrus Kurz is characterized by flattened branches covered with decussate and dimorphic leaves. In this study, we describe fossil foliage of Calocedrus discovered in the Shangcun Formation (early Oligocene) of the Maoming Basin, South China. The fossils have wedge‐shaped branchlet segments and scale‐like strongly dimorphic leaves, similar to the fossil species Calocedrus lantenoisi (Laurent) Tao. There have been no detailed studies of the morphological features and cuticle structures of C. lantenoisi. Therefore, a newly emended diagnosis of the species C. lantenoisi is given based on a detailed study of leaf morphology and cuticular characters exhibited by the Maoming fossils. This is one of the earliest fossil records of Calocedrus in the world, providing additional evidence for the early biogeographic history of this genus and supporting the inference that eastern Asian Calocedrus is primitive among all the living species. The extant species of Calocedrus are mainly distributed in mountainous regions. On the basis of the “nearest living relative” analysis, we propose that the Maoming Basin was adjacent to a mountainous region during the early Oligocene.","PeriodicalId":101317,"journal":{"name":"JOURNAL OF SYSTEMATICS AND EVOLUTION","volume":"482 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2018-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77052501","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The taxonomy and phylogenetic relationships of related taxa are important for understanding the biology of a species. Also, spatial distribution of genetic variation may offer insights into history of range shifts and demographic changes. The genus Tamarix L. from the Old World is a taxonomically challenging group that has widely expanded its range in the recent past. We examined genomic diversity patterns and the taxonomic identities of Korean Tamarix species whose taxonomy has remained unresolved. We used a total of 1773 SNP data from genotyping by sequencing for 37 Tamarix plants representing two species; T. chinensis and T. ramosissima to infer species delimitation and the geographic distribution of genomic diversity. Clustering (STRUCTURE; PCA, neighbor joining) and phylogenetic tree results indicated that the two morphologically similar species T. chinensis and T. ramosissima are genetically distinct and the two Korean populations (Sihwa & Songdo) are clustered closely with T. chinensis. Approximate Bayesian Computation based hypothesis testing results suggested that one of the two Korean populations, Songdo might have primarily been derived from the native area, China, followed by range expansion to Sihwa with a secondary admixture event between an established population, Songdo, and a native population, Beijing.
{"title":"Molecular diagnosis for a Tamarix species from two reclaimed lands along the Yellow Sea in Korea inferred from genome wide SNP markers","authors":"Soo-Rang Lee, J. Gaskin, Young-Dong Kim","doi":"10.1111/jse.12432","DOIUrl":"https://doi.org/10.1111/jse.12432","url":null,"abstract":"The taxonomy and phylogenetic relationships of related taxa are important for understanding the biology of a species. Also, spatial distribution of genetic variation may offer insights into history of range shifts and demographic changes. The genus Tamarix L. from the Old World is a taxonomically challenging group that has widely expanded its range in the recent past. We examined genomic diversity patterns and the taxonomic identities of Korean Tamarix species whose taxonomy has remained unresolved. We used a total of 1773 SNP data from genotyping by sequencing for 37 Tamarix plants representing two species; T. chinensis and T. ramosissima to infer species delimitation and the geographic distribution of genomic diversity. Clustering (STRUCTURE; PCA, neighbor joining) and phylogenetic tree results indicated that the two morphologically similar species T. chinensis and T. ramosissima are genetically distinct and the two Korean populations (Sihwa & Songdo) are clustered closely with T. chinensis. Approximate Bayesian Computation based hypothesis testing results suggested that one of the two Korean populations, Songdo might have primarily been derived from the native area, China, followed by range expansion to Sihwa with a secondary admixture event between an established population, Songdo, and a native population, Beijing.","PeriodicalId":101317,"journal":{"name":"JOURNAL OF SYSTEMATICS AND EVOLUTION","volume":"51 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2018-06-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76934772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. Popova, T. Utescher, Dmitry Gromyko, V. Mosbrugger, L. François
Based on ecospectra of 66 published carpofloras we study dynamics and evolution of Turgay vegetation in Western Siberia during the early Oligocene to earliest Miocene. The ecospectra are obtained using a Plant Functional Type (PFT) classification system comprising 26 herbaceous to arboreal PFTs. The carpofloras originate from seven floristic levels covering the time‐span from the Rupelian to early Aquitanian. Key elements of these levels are documented based on original collection materials. Although impacted by local edaphic conditions, the ecospectra can be interpreted in terms of changing vegetation. Our data show that warm temperate mesophytic, mixed conifer‐broad‐leaved deciduous forest assemblages persisted throughout the Oligocene and earliest Miocene in this core area of Turgai type vegetation. This is in line with comparatively stable climate conditions persisting in the studied time‐span, showing a minor temperature decline and coeval moderate increase in seasonality and precipitation. Concurrently, the reconstructed ecospectra contradict significant continental drying throughout the Oligocene and earliest Miocene. Spatial variability of the proportions of PFTs within the single floristic horizons primarily reflects local edaphic conditions. High diversities of PFTs characteristic for swamp vegetation are mainly confined to the early Oligocene and have a regional focus. Our results indicate that taxonomical diversity, particularly concerning mesic herbs and deciduous shrubs and trees, increased towards the end of the Oligocene. This increase in biodiversity probably can be attributed to an increase in rainfall and extension of terrestrial habitats after the final retreat of the Paratethys.
{"title":"Dynamics and evolution of Turgay‐type vegetation in Western Siberia throughout the early Oligocene to earliest Miocene—a study based on diversity of plant functional types in the carpological record","authors":"S. Popova, T. Utescher, Dmitry Gromyko, V. Mosbrugger, L. François","doi":"10.1111/jse.12420","DOIUrl":"https://doi.org/10.1111/jse.12420","url":null,"abstract":"Based on ecospectra of 66 published carpofloras we study dynamics and evolution of Turgay vegetation in Western Siberia during the early Oligocene to earliest Miocene. The ecospectra are obtained using a Plant Functional Type (PFT) classification system comprising 26 herbaceous to arboreal PFTs. The carpofloras originate from seven floristic levels covering the time‐span from the Rupelian to early Aquitanian. Key elements of these levels are documented based on original collection materials. Although impacted by local edaphic conditions, the ecospectra can be interpreted in terms of changing vegetation. Our data show that warm temperate mesophytic, mixed conifer‐broad‐leaved deciduous forest assemblages persisted throughout the Oligocene and earliest Miocene in this core area of Turgai type vegetation. This is in line with comparatively stable climate conditions persisting in the studied time‐span, showing a minor temperature decline and coeval moderate increase in seasonality and precipitation. Concurrently, the reconstructed ecospectra contradict significant continental drying throughout the Oligocene and earliest Miocene. Spatial variability of the proportions of PFTs within the single floristic horizons primarily reflects local edaphic conditions. High diversities of PFTs characteristic for swamp vegetation are mainly confined to the early Oligocene and have a regional focus. Our results indicate that taxonomical diversity, particularly concerning mesic herbs and deciduous shrubs and trees, increased towards the end of the Oligocene. This increase in biodiversity probably can be attributed to an increase in rainfall and extension of terrestrial habitats after the final retreat of the Paratethys.","PeriodicalId":101317,"journal":{"name":"JOURNAL OF SYSTEMATICS AND EVOLUTION","volume":"33 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2018-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"87683093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Liu Yang, Guan-Song Yang, Hai-Ying Ma, Yue‐Hua Wang, Shi-Kang Shen
Yunnanopilia longistaminea (W.Z. Li) C.Y. Wu & D.Z. Li, which is a controversial species in Opiliaceae, is treated as a variety of Champereia manillana (Blume) Merrill in the Flora of China and morphological analysis has produced conflicting results regarding its affinity to Melientha and Champereia. To determine the systematic position of Yunnanopilia in Opiliaceae, we selected two nuclear regions (internal transcribed spacer [ITS4‐ITS5] and 18S rDNA) and four chloroplast regions (rbcL, matK, psbA‐trnH, and trnS‐trnG) to test the phylogenetics of the family Opiliaceae using maximum likelihood and Bayesian inference analysis. Morphological characteristics were also examined to clarify the similarities and differences among Y. longistaminea and two closely related species. Agonandra was located at the basal position in the family Opiliaceae; in the large clade including other remaining genera, two main clades were clearly identified and correlated with inflorescence morphological characteristics. All samples of Y. longistaminea formed a clade. Yunnanopilia, Melientha, and Champereia were more closely related than other genera of Opiliaceae. Yunnanopilia longistaminea was sister to M. suavis Pierre and was more closely related to M. suavis than to C. manillana. Morphological analysis also showed that differences in the inflorescences and flowers between Y. longistaminea and M. suavis were substantial enough to warrant the retention of Y. longistaminea in its current genus. Thus, we suggest that the monotypic Yunnanopilia be treated as a distinct genus and that the name Y. longistaminea should be adopted.
{"title":"Phylogenetic placement of Yunnanopilia (Opiliaceae) inferred from molecular and morphological data","authors":"Liu Yang, Guan-Song Yang, Hai-Ying Ma, Yue‐Hua Wang, Shi-Kang Shen","doi":"10.1111/jse.12285","DOIUrl":"https://doi.org/10.1111/jse.12285","url":null,"abstract":"Yunnanopilia longistaminea (W.Z. Li) C.Y. Wu & D.Z. Li, which is a controversial species in Opiliaceae, is treated as a variety of Champereia manillana (Blume) Merrill in the Flora of China and morphological analysis has produced conflicting results regarding its affinity to Melientha and Champereia. To determine the systematic position of Yunnanopilia in Opiliaceae, we selected two nuclear regions (internal transcribed spacer [ITS4‐ITS5] and 18S rDNA) and four chloroplast regions (rbcL, matK, psbA‐trnH, and trnS‐trnG) to test the phylogenetics of the family Opiliaceae using maximum likelihood and Bayesian inference analysis. Morphological characteristics were also examined to clarify the similarities and differences among Y. longistaminea and two closely related species. Agonandra was located at the basal position in the family Opiliaceae; in the large clade including other remaining genera, two main clades were clearly identified and correlated with inflorescence morphological characteristics. All samples of Y. longistaminea formed a clade. Yunnanopilia, Melientha, and Champereia were more closely related than other genera of Opiliaceae. Yunnanopilia longistaminea was sister to M. suavis Pierre and was more closely related to M. suavis than to C. manillana. Morphological analysis also showed that differences in the inflorescences and flowers between Y. longistaminea and M. suavis were substantial enough to warrant the retention of Y. longistaminea in its current genus. Thus, we suggest that the monotypic Yunnanopilia be treated as a distinct genus and that the name Y. longistaminea should be adopted.","PeriodicalId":101317,"journal":{"name":"JOURNAL OF SYSTEMATICS AND EVOLUTION","volume":"112 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2018-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"87892403","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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