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Trends over time in the risk of adverse outcomes among patients with SARS-CoV-2 infection SARS-CoV-2感染患者不良结局风险的长期趋势
G. Ioannou, A. O’Hare, K. Berry, V. Fan, K. Crothers, M. Eastment, E. Locke, P. Green, Javeed A. Shah, J. Dominitz
Objectives: We aimed to describe trends in the incidence of adverse outcomes among patients who tested positive for SARS-CoV-2 between February and September 2020 within a national healthcare system. Setting: US Veterans Affairs national healthcare system. Participants: Enrollees in the VA healthcare system who tested positive for SARS-CoV-2 between 2/28/2020 and 9/30/2020 (n=55,952). Outcomes: Death, hospitalization, intensive care unit (ICU) admission and mechanical ventilation within 30 days of testing positive. The incidence of these outcomes was examined among patients infected each month and trends were evaluated using an interrupted time-series analysis. Results: Between February and July 2020, during the first wave of the US pandemic, there were marked downward trends in the 30-day incidence of hospitalization (44.2% to 15.8%), ICU admission (20.3% to 5.3%), mechanical ventilation (12.7% to 2.2%), and death (12.5% to 4.4%), with subsequent stabilization between July and September 2020. These trends persisted after adjustment for sociodemographic characteristics, comorbid conditions, and documented symptoms and after additional adjustment for laboratory test results among hospitalized patients, including among subgroups admitted to the ICU and treated with mechanical ventilation. Among hospitalized patients, use of hydroxychloroquine (56.5% to 0%), azithromycin (48.3% to 16.6%) vasopressors (20.6% to 8.7%), and dialysis (11.6% to 3.8%) decreased while use of dexamethasone (3.4% to 53.1%), other corticosteroids (4.9% to 29.0%) and remdesivir (1.7% to 45.4%) increased from February to September. Conclusions: Among patients who tested positive for SARS-CoV-2 in a large national US healthcare system, risk for a range of adverse outcomes decreased markedly between February and July, with subsequent stabilization from July to September. These trends were not explained by changes in measured baseline patient characteristics.
目的:我们旨在描述2020年2月至9月期间在国家医疗保健系统中SARS-CoV-2检测呈阳性的患者不良结局发生率的趋势。背景:美国退伍军人事务国家医疗保健系统。参与者:在2020年2月28日至2020年9月30日期间对SARS-CoV-2检测呈阳性的VA医疗保健系统的参与者(n=55,952)。结果:检测呈阳性后30天内死亡、住院、入住重症监护病房(ICU)并进行机械通气。在每个月感染的患者中检查这些结果的发生率,并使用中断时间序列分析评估趋势。结果:2020年2月至7月,在美国第一波流感大流行期间,30天住院率(44.2%至15.8%)、ICU入院率(20.3%至5.3%)、机械通气率(12.7%至2.2%)和死亡率(12.5%至4.4%)呈明显下降趋势,随后在2020年7月至9月趋于稳定。在对社会人口学特征、合并症和记录的症状进行调整后,以及对住院患者(包括在ICU住院并接受机械通气治疗的亚组中)的实验室检测结果进行额外调整后,这些趋势仍然存在。2 - 9月住院患者中,羟氯喹(56.5% ~ 0%)、阿奇霉素(48.3% ~ 16.6%)、血管加压剂(20.6% ~ 8.7%)和透析(11.6% ~ 3.8%)的使用率下降,地塞米松(3.4% ~ 53.1%)、其他皮质激素(4.9% ~ 29.0%)和瑞德西韦(1.7% ~ 45.4%)的使用率上升。结论:在美国大型国家医疗保健系统中,SARS-CoV-2检测呈阳性的患者中,一系列不良后果的风险在2月至7月期间显着降低,随后在7月至9月期间趋于稳定。这些趋势不能用基线患者特征的变化来解释。
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引用次数: 10
Population-based estimates of post-acute sequelae of SARS-CoV-2 infection (PASC) prevalence and characteristics 基于人群的SARS-CoV-2感染急性后后遗症(PASC)患病率和特征估计
J. Hirschtick, Andrea R. Titus, Elizabeth Slocum, Laura E. Power, R. Hirschtick, M. Elliott, P. McKane, N. Fleischer
Importance: Emerging evidence suggests many people have persistent symptoms after acute COVID-19 illness. Objective: To estimate the prevalence and correlates of persistent COVID-19 symptoms 30 and 60 days post onset using a population-based sample. Design & Setting: The Michigan COVID-19 Recovery Surveillance Study is a population-based cross-sectional survey of a probability sample of adults with confirmed COVID-19 in the Michigan Disease Surveillance System (MDSS). Respondents completed a survey online or via telephone in English, Spanish, or Arabic between June - December 2020. Participants: Living non-institutionalized adults (aged 18+) in MDSS with COVID-19 onset through mid-April 2020 were eligible for selection (n=28,000). Among 2,000 adults selected, 629 completed the survey. We excluded 79 cases during data collection due to ineligibility, 6 asymptomatic cases, 7 proxy reports, and 24 cases missing outcome data, resulting in a sample size of 593. The sample was predominantly female (56.1%), aged 45 and older (68.2%), and Non-Hispanic White (46.3%) or Black (34.8%). Exposures: Demographic (age, sex, race/ethnicity, and annual household income) and clinical factors (smoking status, body mass index, diagnosed comorbidities, and illness severity). Main outcomes and Measures: We defined post-acute sequelae of SARS-CoV-2 infection (PASC) as persistent symptoms 30+ days (30-day COVID-19) or 60+ days (60-day COVID-19) post COVID-19 onset. Results: 30- and 60-day COVID-19 were highly prevalent (52.5% and 35.0%), even among respondents reporting mild symptoms (29.2% and 24.5%) and non-hospitalized respondents (43.7% and 26.9%, respectively). Low income was statistically significantly associated with 30-day COVID-19 in adjusted models. Respondents reporting very severe (vs. mild) symptoms had 2.25 times higher prevalence of 30-day COVID-19 (Adjusted Prevalence Ratio [aPR] 2.25, 95% CI 1.46-3.46) and 1.71 times higher prevalence of 60-day COVID-19 (aPR 1.71, 95% 1.02-2.88). Hospitalized (vs. non-hospitalized) respondents had about 40% higher prevalence of both 30-day (aPR 1.37, 95% CI 1.12-1.69) and 60-day COVID-19 (aPR 1.40, 95% CI 1.02-1.93). Conclusions and Relevance: PASC is highly prevalent among cases with severe initial symptoms, and, to a lesser extent, cases with mild and moderate symptoms.
重要性:新出现的证据表明,许多人在急性COVID-19疾病后会出现持续症状。目的:通过基于人群的样本估计发病后30天和60天持续COVID-19症状的患病率及其相关因素。设计与环境:密歇根州COVID-19康复监测研究是一项基于人群的横断面调查,调查对象是密歇根州疾病监测系统(MDSS)中确诊COVID-19的成人概率样本。受访者在2020年6月至12月期间以英语、西班牙语或阿拉伯语在线或通过电话完成了调查。参与者:截至2020年4月中旬,MDSS中患有COVID-19发病的生活非机构成年人(18岁以上)符合入选条件(n=28,000)。在2000名被选中的成年人中,629人完成了调查。我们在数据收集过程中排除了79例不合格病例、6例无症状病例、7例代理报告和24例缺少结局数据,样本量为593例。样本主要为女性(56.1%),45岁及以上(68.2%),非西班牙裔白人(46.3%)或黑人(34.8%)。暴露:人口统计学因素(年龄、性别、种族/民族和家庭年收入)和临床因素(吸烟状况、体重指数、诊断出的合并症和疾病严重程度)。主要结局和指标:我们将SARS-CoV-2感染急性后后遗症(PASC)定义为COVID-19发病后30天以上(30天)或60天以上(60天)的持续症状。结果:30天和60天的COVID-19非常普遍(52.5%和35.0%),即使在报告轻微症状的受访者(29.2%和24.5%)和未住院的受访者(分别为43.7%和26.9%)中也是如此。在调整后的模型中,低收入与30天COVID-19有统计学显著相关。报告非常严重(与轻度)症状的受访者30天COVID-19患病率高2.25倍(调整患病率比[aPR] 2.25, 95% CI 1.46-3.46), 60天COVID-19患病率高1.71倍(aPR 1.71, 95% 1.02-2.88)。住院(与非住院)的受访者在30天(aPR 1.37, 95% CI 1.12-1.69)和60天(aPR 1.40, 95% CI 1.02-1.93)的COVID-19患病率均高出约40%。结论和相关性:PASC在初始症状严重的病例中非常普遍,在轻度和中度症状的病例中患病率较低。
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引用次数: 26
SARS-CoV-2 Sequence Characteristics of COVID-19 Persistence and Reinfection COVID-19持续和再感染的SARS-CoV-2序列特征
M. Choudhary, Charles R. Crain, Xueting Qiu, W. Hanage, Jonathan Z. Li
Background. Both SARS-CoV-2 reinfection and persistent infection have been described, but a systematic assessment of mutations is needed. We assessed sequences from published cases of COVID-19 reinfection and persistence, characterizing the hallmarks of reinfecting sequences and the rate of viral evolution in persistent infection. Methods. A systematic review of PubMed was conducted to identify cases of SARS-CoV-2 reinfection and persistent infection with available sequences. Amino acid changes in the reinfecting sequence were compared to both the initial and contemporaneous community variants. Time-measured phylogenetic reconstruction was performed to compare intra-host viral evolution in persistent COVID-19 to community-driven evolution. Results. Fourteen reinfection and five persistent infection cases were identified. Reports of reinfection cases spanned a broad distribution of ages, baseline health status, reinfection severity, and occurred as early as 1.5 months or >8 months after the initial infection. The reinfecting viral sequences had a median of 9 amino acid changes with enrichment of changes in the S, ORF8 and N genes. The number of amino acid changes did not differ by the severity of reinfection and reinfecting variants were similar to the contemporaneous sequences circulating in the community. Patients with persistent COVID-19 demonstrated more rapid accumulation of mutations than seen with community-driven evolution with continued viral changes during convalescent plasma or monoclonal antibody treatment. Conclusions. SARS-CoV-2 reinfection does not require an unusual set of circumstances in the host or virus, while persistent COVID-19 is largely described in immunosuppressed individuals and is associated with accelerated viral evolution as measured by clock rates.
背景。SARS-CoV-2再感染和持续感染都有描述,但需要对突变进行系统评估。我们评估了来自已发表的COVID-19再感染和持续感染病例的序列,表征了再感染序列的特征和持续感染中病毒进化的速度。方法。对PubMed进行了系统评价,以确定具有可用序列的SARS-CoV-2再感染和持续感染病例。再感染序列的氨基酸变化比较了初始和同时期的群落变异。进行了基于时间的系统发育重建,以比较持续性COVID-19的宿主内病毒进化与社区驱动的进化。结果。再感染14例,持续感染5例。再感染病例的报告在年龄、基线健康状况、再感染严重程度等方面分布广泛,最早发生在初次感染后1.5个月或>8个月。再感染的病毒序列中位数有9个氨基酸的变化,其中S、ORF8和N基因的变化富集。氨基酸变化的数量没有因再感染的严重程度而不同,再感染变异与社区中流行的同期序列相似。在恢复期血浆或单克隆抗体治疗期间,持续性COVID-19患者表现出比社区驱动进化更快的突变积累。结论。SARS-CoV-2再感染不需要宿主或病毒的一系列异常情况,而持续的COVID-19主要发生在免疫抑制的个体中,并且与时钟速率测量的病毒进化加速有关。
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引用次数: 25
Differential Cytokine Signatures of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and Influenza Infection Highlight Key Differences in Pathobiology 严重急性呼吸综合征冠状病毒2 (SARS-CoV-2)和流感感染的差异细胞因子特征突出了病理生物学的关键差异
A. Karaba, Weiqiang Zhou, L. Hsieh, Alexis Figueroa, G. Massaccesi, R. Rothman, K. Fenstermacher, L. Sauer, Kathryn Shaw-Saliba, P. Blair, S. Leung, R. Wesson, N. Alachkar, R. El-Diwany, Hongkai Ji, A. Cox
Background: Several inflammatory cytokines are upregulated in severe COVID-19. We compared cytokines in COVID-19 versus influenza in order to define differentiating features of the inflammatory response to these pathogens and their association with severe disease. Because elevated body mass index (BMI) is a known risk factor for severe COVID-19, we examined the relationship of BMI to cytokines associated with severe disease. Methods: Thirty-seven cytokines and chemokines were measured in plasma from 145 patients with COVID-19, 57 patients with influenza, and 30 healthy controls. Controlling for BMI, age, and sex, differences in cytokines between groups were determined by linear regression and random forest prediction was utilized to determine the cytokines most important in distinguishing severe COVID-19 and influenza. Mediation analysis was utilized to identify cytokines that mediate the effect of BMI on disease severity. Results: IL-18, IL-1{beta}, IL-6, and TNF- were significantly increased in COVID-19 versus influenza patients while GM-CSF, IFN-{gamma}, IFN-{lambda}1, IL-10, IL-15, and MCP-2 were significantly elevated in the influenza group. In subgroup analysis based on disease severity, IL-18, IL-6, and TNF- were elevated in severe COVID-19, but not severe influenza. Random forest analysis identified high IL-6 and low IFN-{lambda}1 levels as the most distinct between severe COVID-19 and severe influenza. Finally, IL-1RA was identified as a potential mediator of the effects of BMI on COVID-19 severity. Conclusions: These findings point to activation of fundamentally different innate immune pathways in SARS-CoV-2 and influenza infection, and emphasize drivers of severe COVID-19 to focus both mechanistic and therapeutic investigations.
背景:几种炎症细胞因子在重症COVID-19中上调。我们比较了COVID-19和流感中的细胞因子,以确定对这些病原体的炎症反应的区别特征及其与严重疾病的关联。由于身体质量指数(BMI)升高是严重COVID-19的已知危险因素,因此我们研究了BMI与严重疾病相关细胞因子的关系。方法:测定145例新冠肺炎患者、57例流感患者和30例健康对照者血浆中37种细胞因子和趋化因子的含量。在控制BMI、年龄和性别的情况下,通过线性回归确定各组间细胞因子的差异,并利用随机森林预测确定区分重症COVID-19和流感最重要的细胞因子。利用中介分析来确定介导BMI对疾病严重程度影响的细胞因子。结果:与流感患者相比,COVID-19患者IL-18、IL-1{beta}、IL-6、TNF-显著升高,流感患者GM-CSF、IFN-{gamma}、IFN-{lambda}1、IL-10、IL-15、MCP-2显著升高。在基于疾病严重程度的亚组分析中,IL-18、IL-6和TNF-在严重的COVID-19中升高,但在严重的流感中没有升高。随机森林分析发现,高IL-6和低IFN-{lambda}1水平是严重COVID-19和严重流感之间最明显的差异。最后,IL-1RA被确定为BMI对COVID-19严重程度影响的潜在中介。结论:这些发现表明,在SARS-CoV-2和流感感染中,激活的先天免疫途径根本不同,并强调了严重COVID-19的驱动因素,需要将机制和治疗研究作为重点。
{"title":"Differential Cytokine Signatures of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and Influenza Infection Highlight Key Differences in Pathobiology","authors":"A. Karaba, Weiqiang Zhou, L. Hsieh, Alexis Figueroa, G. Massaccesi, R. Rothman, K. Fenstermacher, L. Sauer, Kathryn Shaw-Saliba, P. Blair, S. Leung, R. Wesson, N. Alachkar, R. El-Diwany, Hongkai Ji, A. Cox","doi":"10.1101/2021.01.29.21250317","DOIUrl":"https://doi.org/10.1101/2021.01.29.21250317","url":null,"abstract":"Background: Several inflammatory cytokines are upregulated in severe COVID-19. We compared cytokines in COVID-19 versus influenza in order to define differentiating features of the inflammatory response to these pathogens and their association with severe disease. Because elevated body mass index (BMI) is a known risk factor for severe COVID-19, we examined the relationship of BMI to cytokines associated with severe disease. Methods: Thirty-seven cytokines and chemokines were measured in plasma from 145 patients with COVID-19, 57 patients with influenza, and 30 healthy controls. Controlling for BMI, age, and sex, differences in cytokines between groups were determined by linear regression and random forest prediction was utilized to determine the cytokines most important in distinguishing severe COVID-19 and influenza. Mediation analysis was utilized to identify cytokines that mediate the effect of BMI on disease severity. Results: IL-18, IL-1{beta}, IL-6, and TNF- were significantly increased in COVID-19 versus influenza patients while GM-CSF, IFN-{gamma}, IFN-{lambda}1, IL-10, IL-15, and MCP-2 were significantly elevated in the influenza group. In subgroup analysis based on disease severity, IL-18, IL-6, and TNF- were elevated in severe COVID-19, but not severe influenza. Random forest analysis identified high IL-6 and low IFN-{lambda}1 levels as the most distinct between severe COVID-19 and severe influenza. Finally, IL-1RA was identified as a potential mediator of the effects of BMI on COVID-19 severity. Conclusions: These findings point to activation of fundamentally different innate immune pathways in SARS-CoV-2 and influenza infection, and emphasize drivers of severe COVID-19 to focus both mechanistic and therapeutic investigations.","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2021-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"87017312","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 20
Clinical Validation of a Novel T-cell Receptor Sequencing Assay for Identification of Recent or Prior SARS-CoV-2 Infection 用于鉴定近期或既往SARS-CoV-2感染的新型t细胞受体测序测定的临床验证
S. Dalai, J. N. Dines, T. Snyder, R. Gittelman, Tera Eerkes, Pashmi Vaney, S. Howard, K. Akers, L. Skewis, Anthony Monteforte, P. Witte, C. Wolf, Hans P. Nesse, M. Herndon, Jia Qadeer, Sarah Duffy, E. Svejnoha, Caroline Taromino, I. Kaplan, J. Alsobrook, T. Manley, L. Baldo
Background While diagnostic, therapeutic, and vaccine development in the COVID-19 pandemic has proceeded at unprecedented speed and scale, critical gaps remain in our understanding of the immune response to SARS-CoV-2. Current diagnostic strategies, including serology, have numerous limitations in addressing these gaps. Here we describe clinical performance of T-Detect COVID, the first reported assay to determine recent or prior SARS-CoV-2 infection based on T-cell receptor (TCR) sequencing and immune repertoire profiling from whole blood samples. Methods Methods for high-throughput immunosequencing of the TCR{beta} gene from blood specimens have been described1. We developed a statistical classifier showing high specificity for identifying prior SARS-CoV-2 infection2, utilizing >4,000 SARS-CoV-2-associated TCR sequences from 784 cases and 2,447 controls across 5 independent cohorts. The T-Detect COVID Assay comprises immunosequencing and classifier application to yield a qualitative positive or negative result. Several retrospective and prospective cohorts were enrolled to assess assay performance including primary and secondary Positive Percent Agreement (PPA; N=205, N=77); primary and secondary Negative Percent Agreement (NPA; N=87, N=79); PPA compared to serology (N=55); and pathogen cross-reactivity (N=38). Results T-Detect COVID demonstrated high PPA in subjects with prior PCR-confirmed SARS-CoV-2 infection (97.1% 15+ days from diagnosis; 94.5% 15+ days from symptom onset), high NPA (~100%) in presumed or confirmed SARS-CoV-2 negative cases, equivalent or higher PPA than two commercial EUA serology tests, and no evidence of pathogen cross-reactivity. Conclusion T-Detect COVID is a novel T-cell immunosequencing assay demonstrating high clinical performance to identify recent or prior SARS-CoV-2 infection from standard blood samples. This assay can provide critical insights on the SARS-CoV-2 immune response, with potential implications for clinical management, risk stratification, surveillance, assessing protective immunity, and understanding long-term sequelae.
虽然COVID-19大流行的诊断、治疗和疫苗开发以前所未有的速度和规模进行,但我们对SARS-CoV-2免疫反应的理解仍然存在重大差距。目前的诊断策略,包括血清学,在解决这些差距方面存在许多局限性。本文描述了T-Detect COVID的临床表现,这是首次报道的基于t细胞受体(TCR)测序和全血样本免疫库分析来确定近期或既往SARS-CoV-2感染的检测方法。方法描述了血液标本中TCR{β}基因的高通量免疫测序方法。我们开发了一个统计分类器,显示出高度特异性,用于识别先前的SARS-CoV-2感染2,利用来自5个独立队列的784例病例和2447例对照的超过4000个SARS-CoV-2相关TCR序列。T-Detect COVID Assay包括免疫测序和分类器应用,以产生定性阳性或阴性结果。几个回顾性和前瞻性队列被纳入评估分析性能,包括主要和次要阳性百分比协议(PPA;N = 205, N = 77);主要和次要负百分比协议(NPA);N = 87, N = 79);PPA与血清学比较(N=55);病原体交叉反应性(N=38)。结果T-Detect COVID在既往pcr确诊的SARS-CoV-2感染的受试者中显示高PPA(97.1%),在诊断后15天以上;在推定或确诊的SARS-CoV-2阴性病例中,NPA高(~100%),PPA等于或高于两次商业EUA血清学检测,并且没有证据表明病原体存在交叉反应性。结论T-Detect COVID是一种新型的t细胞免疫测序检测方法,具有很高的临床性能,可以从标准血液样本中识别近期或既往的SARS-CoV-2感染。该检测可以为SARS-CoV-2免疫反应提供重要见解,对临床管理、风险分层、监测、评估保护性免疫和了解长期后遗症具有潜在意义。
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引用次数: 28
Cytokine Network and Sexual Human Immunodeficiency Virus Transmission in Men Who Have Sex With Men. 细胞因子网络与男男性行为者中人类免疫缺陷病毒的性传播。
Christophe Vanpouille, Andrew Frick, Stephen A Rawlings, Martin Hoenigl, Andrea Lisco, Leonid Margolis, Sara Gianella

Background: Seminal human immunodeficiency virus (HIV) transmission from men to their partners remains the main driver of HIV epidemics worldwide. Semen is not merely a carrier of the virus, but also provides an immunological milieu that affects HIV transmission.

Methods: We collected blood and semen from people with HIV whose epidemiologically linked sexual partners either did or did not acquire HIV. Viral transmission was confirmed by phylogenetic linkage (HIV pol). We measured the concentration of 34 cytokines/chemokines by Luminex in the blood and semen of 21 source partners who transmitted HIV (transmitters) and 22 who did not transmit HIV (nontransmitters) to their sexual partners. Differences between cytokine profiles in transmitters versus nontransmitters were analyzed using the multivariate statistical technique of partial least square discriminant analysis.

Results: The cytokine profile in seminal fluid, but not in peripheral blood, was significantly different between men who have sex with men (MSM) who transmitted HIV and those who did not transmit HIV to their sexual partners (E = 19.77; P < .01). This difference persisted after excluding people with undetectable HIV RNA levels in nontransmitters.

Conclusions: Seminal cytokine profiles correlated with transmission or nontransmission of HIV from the infected MSM to their partners, independently from seminal viral load. Seminal cytokine spectra might be a contributing determinant of sexual HIV transmission, thus providing new directions for the development of strategies aimed at preventing HIV transmission.

背景:男性通过精液将人类免疫缺陷病毒(HIV)传染给伴侣仍然是全球 HIV 流行的主要驱动力。精液不仅是病毒的载体,还提供了影响 HIV 传播的免疫环境:方法:我们收集了艾滋病毒感染者的血液和精液,这些感染者的性伴侣要么感染了艾滋病毒,要么没有感染艾滋病毒。通过系统发育关联(HIV pol)确认了病毒传播。我们用 Luminex 测定了 21 名传播 HIV 的性伴侣(传播者)和 22 名未传播 HIV 的性伴侣(非传播者)的血液和精液中 34 种细胞因子/凝血因子的浓度。采用偏最小二乘法判别分析的多元统计技术分析了传播者与非传播者的细胞因子谱差异:精液中的细胞因子图谱与外周血中的细胞因子图谱相比,在向性伴侣传播艾滋病毒的男男性行为者(MSM)与未向性伴侣传播艾滋病毒的男男性行为者(MSM)之间存在显著差异(E = 19.77;P < .01)。在排除非传播者中检测不到HIV RNA水平的人群后,这一差异依然存在:精液细胞因子谱与受感染的 MSM 向其性伴侣传播或不传播 HIV 相关,与精液病毒载量无关。精液细胞因子谱可能是艾滋病毒性传播的一个决定因素,从而为制定预防艾滋病毒传播的策略提供了新的方向。
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引用次数: 0
Tuberculosis in Hospitalized Patients With Human Immunodeficiency Virus: Clinical Characteristics, Mortality, and Implications From the Rapid Urine-based Screening for Tuberculosis to Reduce AIDS Related Mortality in Hospitalized Patients in Africa. 住院人类免疫缺陷病毒感染者中的结核病:基于尿液的肺结核快速筛查对降低非洲住院病人艾滋病相关死亡率的临床特征、死亡率及启示》(Rapid Urine-based Screening for Tuberculosis to Reduce AIDS Related Mortality in Hospitalized Patients in Africa)。
Ankur Gupta-Wright, Katherine Fielding, Douglas Wilson, Joep J van Oosterhout, Daniel Grint, Henry C Mwandumba, Melanie Alufandika-Moyo, Jurgens A Peters, Lingstone Chiume, Stephen D Lawn, Elizabeth L Corbett

Background: Tuberculosis (TB) is the major killer of people living with human immunodeficiency virus (HIV) globally, with suboptimal diagnostics and management contributing to high case-fatality rates.

Methods: A prospective cohort of patients with confirmed TB (Xpert MTB/RIF and/or Determine TB-LAM Ag positive) identified through screening HIV-positive inpatients with sputum and urine diagnostics in Malawi and South Africa (Rapid urine-based Screening for Tuberculosis to reduce AIDS Related Mortality in hospitalized Patients in Africa [STAMP] trial). Urine was tested prospectively (intervention) or retrospectively (standard of care arm). We defined baseline clinical phenotypes using hierarchical cluster analysis, and also used Cox regression analysis to identify associations with early mortality (≤56 days).

Results: Of 322 patients with TB confirmed between October 2015 and September 2018, 78.0% had ≥1 positive urine test. Antiretroviral therapy (ART) coverage was 80.2% among those not newly diagnosed, but with median CD4 count 75 cells/µL and high HIV viral loads. Early mortality was 30.7% (99/322), despite near-universal prompt TB treatment. Older age, male sex, ART before admission, poor nutritional status, lower hemoglobin, and positive urine tests (TB-LAM and/or Xpert MTB/RIF) were associated with increased mortality in multivariate analyses. Cluster analysis (on baseline variables) defined 4 patient subgroups with early mortality ranging from 9.8% to 52.5%. Although unadjusted mortality was 9.3% lower in South Africa than Malawi, in adjusted models mortality was similar in both countries (hazard ratio, 0.9; P = .729).

Conclusions: Mortality following prompt inpatient diagnosis of HIV-associated TB remained unacceptably high, even in South Africa. Intensified management strategies are urgently needed, for which prognostic indicators could potentially guide both development and subsequent use.

背景:结核病(TB)是全球人类免疫缺陷病毒(HIV)感染者的主要杀手,而诊断和管理不理想是导致高病死率的原因之一:在马拉维和南非,通过对 HIV 阳性住院病人进行痰液和尿液诊断筛查(基于尿液的结核病快速筛查以降低非洲住院病人艾滋病相关死亡率 [STAMP] 试验),确定了确诊结核病(Xpert MTB/RIF 和/或 Determine TB-LAM Ag 阳性)患者的前瞻性队列。对尿液进行了前瞻性检测(干预)或回顾性检测(标准治疗组)。我们利用分层聚类分析确定了基线临床表型,并利用 Cox 回归分析确定了与早期死亡率(≤56 天)的关系:在2015年10月至2018年9月期间确诊的322名肺结核患者中,78.0%的患者尿检≥1次阳性。抗逆转录病毒疗法(ART)在非新确诊患者中的覆盖率为 80.2%,但 CD4 细胞计数中位数为 75 cells/µL,HIV 病毒载量较高。尽管结核病几乎得到了普遍及时的治疗,但早期死亡率为 30.7%(99/322)。在多变量分析中,年龄较大、性别为男性、入院前接受抗逆转录病毒疗法、营养状况差、血红蛋白较低以及尿检(TB-LAM 和/或 Xpert MTB/RIF)阳性与死亡率升高有关。聚类分析(基于基线变量)确定了 4 个患者亚组,其早期死亡率从 9.8% 到 52.5% 不等。虽然南非的未调整死亡率比马拉维低9.3%,但在调整模型中,两国的死亡率相似(危险比为0.9;P = .729):结论:即使在南非,住院病人被及时诊断为艾滋病毒相关肺结核后的死亡率仍然高得令人无法接受。急需加强管理策略,而预后指标有可能为这些策略的制定和后续使用提供指导。
{"title":"Tuberculosis in Hospitalized Patients With Human Immunodeficiency Virus: Clinical Characteristics, Mortality, and Implications From the Rapid Urine-based Screening for Tuberculosis to Reduce AIDS Related Mortality in Hospitalized Patients in Africa.","authors":"Ankur Gupta-Wright, Katherine Fielding, Douglas Wilson, Joep J van Oosterhout, Daniel Grint, Henry C Mwandumba, Melanie Alufandika-Moyo, Jurgens A Peters, Lingstone Chiume, Stephen D Lawn, Elizabeth L Corbett","doi":"10.1093/cid/ciz1133","DOIUrl":"10.1093/cid/ciz1133","url":null,"abstract":"<p><strong>Background: </strong>Tuberculosis (TB) is the major killer of people living with human immunodeficiency virus (HIV) globally, with suboptimal diagnostics and management contributing to high case-fatality rates.</p><p><strong>Methods: </strong>A prospective cohort of patients with confirmed TB (Xpert MTB/RIF and/or Determine TB-LAM Ag positive) identified through screening HIV-positive inpatients with sputum and urine diagnostics in Malawi and South Africa (Rapid urine-based Screening for Tuberculosis to reduce AIDS Related Mortality in hospitalized Patients in Africa [STAMP] trial). Urine was tested prospectively (intervention) or retrospectively (standard of care arm). We defined baseline clinical phenotypes using hierarchical cluster analysis, and also used Cox regression analysis to identify associations with early mortality (≤56 days).</p><p><strong>Results: </strong>Of 322 patients with TB confirmed between October 2015 and September 2018, 78.0% had ≥1 positive urine test. Antiretroviral therapy (ART) coverage was 80.2% among those not newly diagnosed, but with median CD4 count 75 cells/µL and high HIV viral loads. Early mortality was 30.7% (99/322), despite near-universal prompt TB treatment. Older age, male sex, ART before admission, poor nutritional status, lower hemoglobin, and positive urine tests (TB-LAM and/or Xpert MTB/RIF) were associated with increased mortality in multivariate analyses. Cluster analysis (on baseline variables) defined 4 patient subgroups with early mortality ranging from 9.8% to 52.5%. Although unadjusted mortality was 9.3% lower in South Africa than Malawi, in adjusted models mortality was similar in both countries (hazard ratio, 0.9; P = .729).</p><p><strong>Conclusions: </strong>Mortality following prompt inpatient diagnosis of HIV-associated TB remained unacceptably high, even in South Africa. Intensified management strategies are urgently needed, for which prognostic indicators could potentially guide both development and subsequent use.</p>","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744971/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86365147","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Safety and Efficacy of Fidaxomicin and Vancomycin in Children and Adolescents with Clostridioides (Clostridium) difficile Infection: A Phase 3, Multicenter, Randomized, Single-blind Clinical Trial (SUNSHINE). 菲达霉素和万古霉素治疗儿童和青少年艰难梭菌感染的安全性和有效性:3期、多中心、随机、单盲临床试验(SUNSHINE)。
Joshua Wolf, Krisztina Kalocsai, Claudia Fortuny, Stefan Lazar, Samantha Bosis, Bartosz Korczowski, Arnaud Petit, Daniel Bradford, Rodney Croos-Dabrera, Elodie Incera, Joost Melis, Rob van Maanen

Background: Fidaxomicin, a narrow-spectrum antibiotic approved for Clostridioides (Clostridium) difficile infection (CDI) in adults, is associated with lower rates of recurrence than vancomycin; however, pediatric data are limited. This multicenter, investigator-blind, phase 3, parallel-group trial assessed the safety and efficacy of fidaxomicin in children.

Methods: Patients aged <18 years with confirmed CDI were randomized 2:1 to 10 days of treatment with fidaxomicin (suspension or tablets, twice daily) or vancomycin (suspension or tablets, 4 times daily). Safety assessments included treatment-emergent adverse events. The primary efficacy end point was confirmed clinical response (CCR), 2 days after the end of treatment (EOT). Secondary end points included global cure (GC; CCR without CDI recurrence) 30 days after EOT (end of study; EOS). Plasma and stool concentrations of fidaxomicin and its active metabolite OP-1118 were measured.

Results: Of 148 patients randomized, 142 were treated (30 <2 years old). The proportion of participants with treatment-emergent adverse events was similar with fidaxomicin (73.5%) and vancomycin (75.0%). Of 3 deaths in the fidaxomicin arm during the study, none were CDI or treatment related. The rate of CCR at 2 days after EOT was 77.6% (76 of 98 patients) with fidaxomicin and 70.5% (31 of 44) with vancomycin, whereas the rate of GC at EOS was significantly higher in participants receiving fidaxomicin (68.4% vs 50.0%; adjusted treatment difference, 18.8%; 95% confidence interval, 1.5%-35.3%). Systemic absorption of fidaxomicin and OP-1118 was minimal, and stool concentrations were high.

Conclusions: Compared with vancomycin, fidaxomicin was well tolerated and demonstrated significantly higher rates of GC in children and adolescents with CDI.

Clinical trials registration: NCT02218372.

背景:菲达霉素是一种获准用于治疗成人艰难梭菌感染(CDI)的窄谱抗生素,其复发率低于万古霉素;但儿科数据有限。这项多中心、研究者盲法、3期、平行组试验评估了非达霉素在儿童中的安全性和有效性:患者年龄 结果结果:在 148 名随机患者中,142 人接受了治疗(30 人得出结论):与万古霉素相比,非达霉素的耐受性良好,在儿童和青少年CDI患者中的GC率明显更高:临床试验注册:NCT02218372。
{"title":"Safety and Efficacy of Fidaxomicin and Vancomycin in Children and Adolescents with Clostridioides (Clostridium) difficile Infection: A Phase 3, Multicenter, Randomized, Single-blind Clinical Trial (SUNSHINE).","authors":"Joshua Wolf, Krisztina Kalocsai, Claudia Fortuny, Stefan Lazar, Samantha Bosis, Bartosz Korczowski, Arnaud Petit, Daniel Bradford, Rodney Croos-Dabrera, Elodie Incera, Joost Melis, Rob van Maanen","doi":"10.1093/cid/ciz1149","DOIUrl":"10.1093/cid/ciz1149","url":null,"abstract":"<p><strong>Background: </strong>Fidaxomicin, a narrow-spectrum antibiotic approved for Clostridioides (Clostridium) difficile infection (CDI) in adults, is associated with lower rates of recurrence than vancomycin; however, pediatric data are limited. This multicenter, investigator-blind, phase 3, parallel-group trial assessed the safety and efficacy of fidaxomicin in children.</p><p><strong>Methods: </strong>Patients aged <18 years with confirmed CDI were randomized 2:1 to 10 days of treatment with fidaxomicin (suspension or tablets, twice daily) or vancomycin (suspension or tablets, 4 times daily). Safety assessments included treatment-emergent adverse events. The primary efficacy end point was confirmed clinical response (CCR), 2 days after the end of treatment (EOT). Secondary end points included global cure (GC; CCR without CDI recurrence) 30 days after EOT (end of study; EOS). Plasma and stool concentrations of fidaxomicin and its active metabolite OP-1118 were measured.</p><p><strong>Results: </strong>Of 148 patients randomized, 142 were treated (30 <2 years old). The proportion of participants with treatment-emergent adverse events was similar with fidaxomicin (73.5%) and vancomycin (75.0%). Of 3 deaths in the fidaxomicin arm during the study, none were CDI or treatment related. The rate of CCR at 2 days after EOT was 77.6% (76 of 98 patients) with fidaxomicin and 70.5% (31 of 44) with vancomycin, whereas the rate of GC at EOS was significantly higher in participants receiving fidaxomicin (68.4% vs 50.0%; adjusted treatment difference, 18.8%; 95% confidence interval, 1.5%-35.3%). Systemic absorption of fidaxomicin and OP-1118 was minimal, and stool concentrations were high.</p><p><strong>Conclusions: </strong>Compared with vancomycin, fidaxomicin was well tolerated and demonstrated significantly higher rates of GC in children and adolescents with CDI.</p><p><strong>Clinical trials registration: </strong>NCT02218372.</p>","PeriodicalId":10421,"journal":{"name":"Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744996/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81994940","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Tuberculosis in Hospitalized Patients With Human Immunodeficiency Virus: Clinical Characteristics, Mortality, and Implications From the Rapid Urine-based Screening for Tuberculosis to Reduce AIDS Related Mortality in Hospitalized Patients in Africa. 感染人类免疫缺陷病毒的住院患者的结核病:临床特征、死亡率和基于尿的结核病快速筛查降低非洲住院患者艾滋病相关死亡率的意义
Ankur Gupta-Wright, Katherine Fielding, Douglas Wilson, Joep J van Oosterhout, Daniel Grint, Henry C Mwandumba, Melanie Alufandika-Moyo, Jurgens A Peters, Lingstone Chiume, Stephen D Lawn, Elizabeth L Corbett

Background: Tuberculosis (TB) is the major killer of people living with human immunodeficiency virus (HIV) globally, with suboptimal diagnostics and management contributing to high case-fatality rates.

Methods: A prospective cohort of patients with confirmed TB (Xpert MTB/RIF and/or Determine TB-LAM Ag positive) identified through screening HIV-positive inpatients with sputum and urine diagnostics in Malawi and South Africa (Rapid urine-based Screening for Tuberculosis to reduce AIDS Related Mortality in hospitalized Patients in Africa [STAMP] trial). Urine was tested prospectively (intervention) or retrospectively (standard of care arm). We defined baseline clinical phenotypes using hierarchical cluster analysis, and also used Cox regression analysis to identify associations with early mortality (≤56 days).

Results: Of 322 patients with TB confirmed between October 2015 and September 2018, 78.0% had ≥1 positive urine test. Antiretroviral therapy (ART) coverage was 80.2% among those not newly diagnosed, but with median CD4 count 75 cells/µL and high HIV viral loads. Early mortality was 30.7% (99/322), despite near-universal prompt TB treatment. Older age, male sex, ART before admission, poor nutritional status, lower hemoglobin, and positive urine tests (TB-LAM and/or Xpert MTB/RIF) were associated with increased mortality in multivariate analyses. Cluster analysis (on baseline variables) defined 4 patient subgroups with early mortality ranging from 9.8% to 52.5%. Although unadjusted mortality was 9.3% lower in South Africa than Malawi, in adjusted models mortality was similar in both countries (hazard ratio, 0.9; P = .729).

Conclusions: Mortality following prompt inpatient diagnosis of HIV-associated TB remained unacceptably high, even in South Africa. Intensified management strategies are urgently needed, for which prognostic indicators could potentially guide both development and subsequent use.

背景:结核病(TB)是全球人类免疫缺陷病毒(HIV)感染者的主要杀手,不理想的诊断和管理导致了高病死率。方法:一项前瞻性队列研究,通过筛查马拉维和南非的hiv阳性住院患者,通过痰和尿诊断发现确诊结核病患者(Xpert MTB/RIF和/或确定TB- lam Ag阳性)(基于快速尿液筛查结核病以降低非洲住院患者艾滋病相关死亡率[STAMP]试验)。前瞻性尿液检测(干预组)或回顾性尿液检测(标准护理组)。我们使用分层聚类分析定义基线临床表型,并使用Cox回归分析确定与早期死亡率(≤56天)的关联。结果:2015年10月至2018年9月期间确诊的322例结核病患者中,78.0%的患者尿检≥1阳性。抗逆转录病毒治疗(ART)覆盖率在非新诊断患者中为80.2%,但中位CD4细胞计数为75细胞/µL, HIV病毒载量高。早期死亡率为30.7%(99/322),尽管结核病得到了近乎普遍的及时治疗。在多因素分析中,年龄较大、男性、入院前接受抗逆转录病毒治疗、营养状况不佳、血红蛋白较低和尿检阳性(TB-LAM和/或Xpert MTB/RIF)与死亡率增加相关。聚类分析(基于基线变量)确定了4个患者亚组,其早期死亡率从9.8%到52.5%不等。尽管南非未经调整的死亡率比马拉维低9.3%,但在调整后的模型中,两国的死亡率相似(风险比,0.9;P = .729)。结论:即使在南非,及时住院诊断hiv相关结核病后的死亡率仍然高得令人无法接受。迫切需要加强管理战略,其预测指标可能指导开发和后续使用。
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引用次数: 0
Long-Term Persistence of Spike Protein Antibody and Predictive Modeling of Antibody Dynamics After Infection With Severe Acute Respiratory Syndrome Coronavirus 2 冠状病毒感染后刺突蛋白抗体的长期持续及抗体动力学的预测模型
L. Grandjean, Anja Saso, A. Ortiz, Tanya Lam, J. Hatcher, Rosie Thistlethwayte, M. Harris, T. Best, Marina Johnson, H. Wagstaffe, E. Ralph, Annabelle Mai, C. Colijn, J. Breuer, M. Buckland, K. Gilmour, D. Goldblatt
Background: Antibodies to Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) have been shown to neutralize the virus in-vitro. Similarly, animal challenge models suggest that neutralizing antibodies isolated from SARS-CoV-2 infected individuals prevent against disease upon re-exposure to the virus. Understanding the nature and duration of the antibody response following SARS-CoV-2 infection is therefore critically important. Methods: Between April and October 2020 we undertook a prospective cohort study of 3555 healthcare workers in order to elucidate the duration and dynamics of antibody responses following infection with SARS-CoV-2. After a formal performance evaluation against 169 PCR confirmed cases and negative controls, the Meso-Scale Discovery assay was used to quantify in parallel, antibody titers to the SARS-CoV-2 nucleoprotein (N), spike (S) protein and the receptor-binding-domain (RBD) of the S-protein. All seropositive participants were followed up monthly for a maximum of 7 months; those participants that were symptomatic, with known dates of symptom-onset, seropositive by the MSD assay and who provided 2 or more monthly samples were included in the analysis. Survival analysis was used to determine the proportion of sero-reversion (switching from positive to negative) from the raw data. In order to predict long-term antibody dynamics, two hierarchical longitudinal Gamma models were implemented to provide predictions for the lower bound (continuous antibody decay to zero, 'Gamma-decay') and upper bound (decay-to-plateau due to long lived plasma cells, 'Gamma-plateau') long-term antibody titers. Results: A total of 1163 samples were provided from 349 of 3555 recruited participants who were symptomatic, seropositive by the MSD assay, and were followed up with 2 or more monthly samples. At 200 days post symptom onset, 99% of participants had detectable S-antibody whereas only 75% of participants had detectable N-antibody. Even under our most pessimistic assumption of persistent negative exponential decay, the S-antibody was predicted to remain detectable in 95% of participants until 465 days [95% CI 370-575] after symptom onset. Under the Gamma-plateau model, the entire posterior distribution of S-antibody titers at plateau remained above the threshold for detection indefinitely. Surrogate neutralization assays demonstrated a strong positive correlation between antibody titers to the S-protein and blocking of the ACE-2 receptor in-vitro [R2=0.72, p<0.001]. By contrast, the N-antibody waned rapidly with a half-life of 60 days [95% CI 52-68]. Discussion: This study has demonstrated persistence of the spike antibody in 99% of participants at 200 days following SARS-CoV-2 symptoms and rapid decay of the nucleoprotein antibody. Diagnostic tests or studies that rely on the N-antibody as a measure of seroprevalence must be interpreted with caution. Our lowest bound prediction for duration of the spike antibody was 465 days and our upp
背景:严重急性呼吸综合征冠状病毒-2 (SARS-CoV-2)抗体已被证明能在体外中和该病毒。同样,动物攻击模型表明,从SARS-CoV-2感染个体中分离的中和抗体在再次接触该病毒时可以预防疾病。因此,了解SARS-CoV-2感染后抗体反应的性质和持续时间至关重要。方法:在2020年4月至10月期间,我们对3555名医护人员进行了前瞻性队列研究,以阐明感染SARS-CoV-2后抗体反应的持续时间和动态。在对169例PCR确诊病例和阴性对照进行正式性能评估后,使用Meso-Scale Discovery法平行定量SARS-CoV-2核蛋白(N)、刺突(S)蛋白和S蛋白的受体结合域(RBD)的抗体滴度。所有血清阳性的参与者每月随访最多7个月;那些有症状、已知症状出现日期、经MSD检测血清呈阳性、每月提供2次或更多样本的参与者被纳入分析。生存分析用于确定原始数据中血清逆转(从阳性转为阴性)的比例。为了预测长期抗体动态,实施了两个分层纵向Gamma模型,以提供下限(连续抗体衰减到零,“Gamma衰减”)和上限(由于长寿命浆细胞衰减到平台,“Gamma平台”)长期抗体滴度的预测。结果:招募的3555名参与者中有349名有症状,MSD检测呈血清阳性,共提供了1163份样本,并随访了2个月或更长时间的样本。在症状出现后200天,99%的参与者检测到s抗体,而只有75%的参与者检测到n抗体。即使在我们最悲观的持续负指数衰减假设下,预计95%的参与者在症状出现后465天内仍可检测到s抗体[95% CI 370-575]。在gamma -平台模型下,s抗体滴度在平台上的整个后验分布无限期地保持在检测阈值之上。替代中和试验表明,s蛋白抗体滴度与体外阻断ACE-2受体之间存在很强的正相关[R2=0.72, p<0.001]。相比之下,n抗体迅速消退,半衰期为60天[95% CI 52-68]。讨论:这项研究表明,在SARS-CoV-2症状出现200天后,99%的参与者体内的刺突抗体持续存在,核蛋白抗体迅速衰减。诊断测试或研究依赖于n抗体作为血清流行率的测量必须谨慎解释。我们对刺突抗体持续时间的下限预测为465天,我们的上限预测刺突抗体无限期地保持与报告的SARS-CoV感染的长期血清阳性一致。s抗体的长期存在,以及s抗体与体外病毒替代物中和之间的强正相关,对SARS-CoV-2感染后功能性免疫的持续时间具有重要意义。
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引用次数: 27
期刊
Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America
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