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Technologies for Decoding Cancer Metabolism with Spatial Resolution. 以空间分辨率解码癌症代谢的技术。
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-16 DOI: 10.1101/cshperspect.a041553
Walter W Chen, Michael E Pacold, David M Sabatini, Naama Kanarek

It is increasingly appreciated that cancer cells adapt their metabolic pathways to support rapid growth and proliferation as well as survival, often even under the poor nutrient conditions that characterize some tumors. Cancer cells can also rewire their metabolism to circumvent chemotherapeutics that inhibit core metabolic pathways, such as nucleotide synthesis. A critical approach to the study of cancer metabolism is metabolite profiling (metabolomics), the set of technologies, usually based on mass spectrometry, that allow for the detection and quantification of metabolites in cancer cells and their environments. Metabolomics is a burgeoning field, driven by technological innovations in mass spectrometers, as well as novel approaches to isolate cells, subcellular compartments, and rare fluids, such as the interstitial fluid of tumors. Here, we discuss three emerging metabolomic technologies: spatial metabolomics, single-cell metabolomics, and organellar metabolomics. The use of these technologies along with more established profiling methods, like single-cell transcriptomics and proteomics, is likely to underlie new discoveries and questions in cancer research.

人们越来越认识到,癌细胞会调整其代谢途径,以支持快速生长、增殖和存活,即使在某些肿瘤所特有的恶劣营养条件下也是如此。癌细胞还能重新构建新陈代谢,以规避抑制核苷酸合成等核心代谢途径的化疗药物。研究癌症代谢的一个重要方法是代谢组学(metabolomics),这是一套通常以质谱为基础的技术,可以检测和量化癌细胞及其环境中的代谢物。代谢组学是一个蓬勃发展的领域,质谱仪的技术创新以及分离细胞、亚细胞区和罕见体液(如肿瘤间质)的新方法推动了这一领域的发展。在此,我们将讨论三种新兴的代谢组学技术:空间代谢组学、单细胞代谢组学和细胞器代谢组学。这些技术与更成熟的分析方法(如单细胞转录组学和蛋白质组学)一起使用,很可能会为癌症研究带来新的发现和问题。
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引用次数: 0
The Teplizumab Saga: The Challenge of Not Getting Lost in Clinical Translation. 特普利珠单抗传奇:不迷失在临床转化中的挑战。
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-16 DOI: 10.1101/cshperspect.a041600
Lucienne Chatenoud, Kevan C Herold, Jean-François Bach, Jeffrey A Bluestone

In November 2022, teplizumab became the first drug approved to delay the course of any autoimmune disease and to change the course of type 1 diabetes (T1D) since the discovery of insulin. The path to its approval took more than 30 years with both successes and failures along the way that would have normally led to its abandonment in other circumstances. Development of the drug was based on studies in preclinical models and parallels efforts in transplantation. From a series of innovative adaptations in response to issues related to adverse events and immunogenicity, humanized Fc receptors (FcR) nonbinding antibodies were developed with improved clinical outcomes and safety as well as new mechanisms. Importantly, as a result of these developments, teplizumab has been able to achieve efficacy over extended periods of time without global immune suppression. The approval of teplizumab represents a significant first step toward achieving escape from T1D and, in the future, reversal of the disease.

2022 年 11 月,替普利珠单抗(teplizumab)成为自胰岛素发现以来首个获批用于延缓自身免疫性疾病病程和改变 1 型糖尿病(T1D)病程的药物。该药的获批之路历时 30 多年,一路上有成功也有失败,在其他情况下,这些失败通常会导致该药被放弃。该药物的开发以临床前模型研究为基础,与移植方面的努力相似。针对与不良反应和免疫原性有关的问题进行了一系列创新性调整,开发出了人源化 Fc 受体(FcR)非结合抗体,改善了临床效果和安全性,并建立了新的机制。重要的是,由于取得了这些进展,替普利珠单抗能够在没有全面免疫抑制的情况下长期发挥疗效。teplizumab 的获批标志着向摆脱 T1D 以及将来逆转该疾病迈出了重要的第一步。
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引用次数: 0
Autoantigen-Specific Immunotherapies for the Prevention and Treatment of Type 1 Diabetes. 预防和治疗 1 型糖尿病的自身抗原特异性免疫疗法。
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-16 DOI: 10.1101/cshperspect.a041598
Mark Peakman, Pere Santamaria

Type 1 diabetes (T1D) is driven by an immunologically complex, diverse, and self-sustaining immune response directed against tissue autoantigens, leading to loss or dysfunction of β cells. To date, the single approved immune intervention in T1D is based on a strategy that is similar to that used in other related autoimmune diseases, namely, the attenuation of immune cell activation. As a next-generation approach that is more focused on underlying mechanisms of loss of tolerance, antigen-specific immunotherapy is designed to establish or restore bystander immunoregulation in a highly tissue- and target-specific fashion. Here, we describe the basis for this alternative approach, which could also have potential for complementarity if used in combination with more conventional immune modulators, and highlight recent advances, knowledge gaps, and next steps in clinical development.

1 型糖尿病(T1D)是由针对组织自身抗原的复杂、多样和自我维持的免疫反应驱动的,这种免疫反应会导致 β 细胞丢失或功能障碍。迄今为止,唯一获得批准的治疗 T1D 的免疫干预措施是基于一种与其他相关自身免疫性疾病类似的策略,即抑制免疫细胞的活化。抗原特异性免疫疗法是一种更注重耐受性丧失潜在机制的下一代方法,旨在以高度组织特异性和靶点特异性的方式建立或恢复旁观者免疫调节。在此,我们将介绍这种替代方法的基础,如果与更传统的免疫调节剂结合使用,这种方法还可能具有互补性,并重点介绍临床开发的最新进展、知识差距和下一步计划。
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引用次数: 0
Imaging Approaches in Cancer Biology. 癌症生物学中的成像方法。
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-03 DOI: 10.1101/cshperspect.a041349
Nirakar Rajbhandari, Emily Diaz, Marcie Kritzik, Tannishtha Reya

A majority of cancer research is focused on defining the cellular and molecular basis of cancer cells and the signals that control oncogenic transformation; as a consequence, we know very little about the dynamic behavior of cancer cells in vivo. To begin to view and understand the mechanisms and interactions that control cancer initiation, growth, and metastatic progression and how these processes are influenced by the microenvironment and the signals derived from it, it is essential to develop strategies that allow imaging of the cancer cells in the context of the living microenvironment. Here, we discuss emerging work designed to visualize how cancer cells function within the microenvironment to discover how these interactions act coordinately to enable aberrant growth and to understand how they could be targeted to design new approaches to intercept the disease.

大部分癌症研究都集中在确定癌细胞的细胞和分子基础以及控制致癌转化的信号上;因此,我们对癌细胞在体内的动态行为知之甚少。要开始观察和了解控制癌症发生、生长和转移的机制和相互作用,以及这些过程如何受到微环境和来自微环境的信号的影响,就必须开发能在活体微环境中对癌细胞进行成像的策略。在此,我们将讨论新出现的旨在观察癌细胞如何在微环境中发挥作用的工作,以发现这些相互作用如何协调地促成异常生长,并了解如何针对这些相互作用设计新的方法来阻断疾病。
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引用次数: 0
History of Finding Genes and Mutations Causing Inherited Retinal Diseases. 发现导致遗传性视网膜疾病的基因和突变的历史。
IF 7.8 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-03 DOI: 10.1101/cshperspect.a041287
Stephen P Daiger, Lori S Sullivan, Elizabeth L Cadena, Sara J Bowne

This is a brief history of the work by many investigators throughout the world to find genes and mutations causing inherited retinal diseases (IRDs). It largely covers 40 years, from the late-1980s through today. Perhaps the best reason to study history is to better understand the present. The "present" for IRDs is exceptionally complex. Mutations in hundreds of genes are known to cause IRDs; tens of thousands of disease-causing mutations have been reported; clinical consequences are highly variable, even within the same family; and genetic testing, counseling, and clinical care are highly advanced but technically challenging. The aim of this review is to account for how we have come to know and understand, at least partly, this complexity.

这是世界各地许多研究人员寻找导致遗传性视网膜疾病(IRD)的基因和突变的工作简史。它主要涵盖了从20世纪80年代末到今天的40年。也许研究历史的最好理由是更好地了解当下。IRD的“礼物”异常复杂。已知数百个基因的突变会导致IRD;已经报道了数以万计的致病突变;临床后果是高度可变的,即使在同一家族中也是如此;基因检测、咨询和临床护理非常先进,但在技术上具有挑战性。这篇综述的目的是说明我们是如何了解和理解这种复杂性的,至少在一定程度上是这样。
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引用次数: 0
The Pathogenesis of Type 1 Diabetes 1 型糖尿病的发病机制
IF 5.4 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-08-12 DOI: 10.1101/cshperspect.a041623
Kevan C. Herold, Jeffrey P. Krischer
Type 1 diabetes (T1D) is a chronic autoimmune disease with a metabolic outcome. Studies over the past decades, have identified the contributions of genetics, environmental factors, and disorders of innate and adaptive immunity that collectively cause β-cell killing. The risk for T1D can be genetically identified but genotypes alone do not identify factors that lead to disease progression. The incidence of T1D has been increasing in the past few decades, which may be due to reduced exposure to infections and other environmental factors that can reduce autoimmunity (hygiene hypothesis). Once initiated, the disease pathogenesis progresses through stages that have been defined on the bases of immunologic (i.e., autoantibodies) and metabolic markers (glucose tolerance). The stages only loosely capture the risk for the time to diagnosis of disease, do not directly reflect disease activity, and there may be variance in the rate of progression within stages. In a general way, the stages can be used to identify patients at risk in whom interventions may be considered to modulate progression. This was achieved with the approval of teplizumab, a humanized anti-CD3 monoclonal antibody, for delaying the diagnosis of T1D.
1 型糖尿病(T1D)是一种慢性自身免疫性疾病,会导致新陈代谢紊乱。过去几十年的研究发现,遗传、环境因素以及先天性和适应性免疫紊乱共同导致了β细胞杀伤。T1D的风险可以从基因上确定,但仅凭基因型并不能确定导致疾病进展的因素。在过去几十年中,T1D 的发病率一直在上升,这可能是由于接触感染和其他环境因素的机会减少,从而降低了自身免疫力(卫生假说)。一旦发病,疾病的发病机制就会经历几个阶段,这些阶段是根据免疫学指标(即自身抗体)和代谢指标(葡萄糖耐量)确定的。这些阶段只是粗略地反映了疾病诊断时间的风险,并不能直接反映疾病的活动性,而且阶段内的进展速度可能存在差异。一般来说,分期可用于确定有风险的患者,对这些患者可考虑采取干预措施以控制病情发展。随着人源化抗 CD3 单克隆抗体 teplizumab 获得批准用于延迟 T1D 的诊断,这一目标已经实现。
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引用次数: 0
The Human Pancreas in Type 1 Diabetes: Lessons Learned from the Network of Pancreatic Organ Donors with Diabetes 1 型糖尿病患者的人体胰腺:从糖尿病胰腺器官捐赠者网络中汲取的经验教训
IF 5.4 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-08-12 DOI: 10.1101/cshperspect.a041588
Irina Kusmartseva, Amanda Posgai, Mingder Yang, Richard Oram, Mark Atkinson, Alberto Pugliese, Carmella Evans-Molina
The Network for Pancreatic Organ Donors with Diabetes (nPOD) has helped shape the contemporary understanding of type 1 diabetes (T1D) pathogenesis in humans through the procurement, distribution to scientists, and collaborative study of human pancreata and disease-related tissues from organ donors with T1D and islet autoantibody positivity. Since its inception in 2007, nPOD has collected tissues from 600 donors, and these resources have been distributed across 22 countries to more than 290 projects, resulting in nearly 350 publications. Research projects supported by nPOD span the breadth of diabetes research, including studies on T1D immunology and β-cell biology, and have uniquely unveiled abnormalities in other pancreatic cell types. In this article, we will detail the history and programmatic features of nPOD, as well as highlight key scientific findings from nPOD studies. We will present our view for the future of nPOD and discuss how the success of the program has established a precedent whereby knowledge gaps in biomedical research can be addressed through the study of human tissues.
糖尿病胰腺器官捐献者网络(nPOD)通过从患有 T1D 和胰岛自身抗体阳性的器官捐献者那里获取人体胰腺和疾病相关组织,并将其分发给科学家和进行合作研究,帮助当代人了解 1 型糖尿病(T1D)的发病机制。自 2007 年成立以来,nPOD 已从 600 名捐献者那里收集了组织,这些资源已在 22 个国家分配给 290 多个项目,发表了近 350 篇论文。由 nPOD 支持的研究项目涉及糖尿病研究的方方面面,包括 T1D 免疫学和 β 细胞生物学研究,并独特地揭示了其他胰腺细胞类型的异常。在本文中,我们将详细介绍 nPOD 的历史和计划特点,并重点介绍 nPOD 研究的主要科学发现。我们将介绍我们对 nPOD 未来的看法,并讨论该计划的成功如何开创了一个先例,即通过研究人体组织来解决生物医学研究中的知识空白。
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引用次数: 0
Genetics and Epigenetics of Type 1 Diabetes Self-Reactive T Cells 1 型糖尿病自反应 T 细胞的遗传学和表观遗传学
IF 5.4 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-08-12 DOI: 10.1101/cshperspect.a041586
Tae Gun Kang, Benjamin Youngblood
Type 1 diabetes (T1D) serves as an exemplar of chronic autoimmune disease characterized by insulin deficiency due to pancreatic β-cell destruction, leading to hyperglycemia and progressive organ failure. Until recently, therapeutic efforts to mitigate the root cause of disease have been limited by the challenges in studying mechanisms involved in immune tolerance in humans. The current clinical advances, and existing challenges, highlight a need to incorporate new insights into mechanisms into correlative studies that assess immune tolerance in the setting of delayed β-cell destruction. Among several factors known to promote T1D, autoreactive T cells play a critical role in initiating and sustaining disease through their direct recognition and destruction of β cells. Emerging research defining the genetic and epigenetic etiology of long-lived β-cell-specific T cells is providing new insight into mechanisms that promote lifelong disease and future opportunities for targeted therapeutic intervention. This article will provide an overview of recent progress toward understanding the development of autoreactive T cells and epigenetic mechanisms stabilizing their developmental state during T1D pathogenesis.
1 型糖尿病(T1D)是慢性自身免疫性疾病的典范,其特点是胰岛β细胞破坏导致胰岛素缺乏,从而引发高血糖和渐进性器官衰竭。直到最近,由于在研究人体免疫耐受机制方面存在挑战,缓解疾病根源的治疗工作一直受到限制。目前的临床进展和现有的挑战突出表明,有必要将对机制的新认识纳入相关研究,以评估延迟β细胞破坏情况下的免疫耐受性。在已知的几种促进 T1D 的因素中,自反应 T 细胞通过直接识别和破坏 β 细胞,在引发和维持疾病方面起着至关重要的作用。界定长寿命 β 细胞特异性 T 细胞的遗传和表观遗传学病因学的新兴研究为了解促进终生疾病的机制和未来靶向治疗干预的机会提供了新的视角。本文将概述最近在了解自反应性 T 细胞的发育以及在 T1D 发病过程中稳定其发育状态的表观遗传学机制方面取得的进展。
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引用次数: 0
Genetics of Parkinson's Disease: From Causes to Treatment 帕金森病的遗传学:从病因到治疗
IF 5.4 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-08-12 DOI: 10.1101/cshperspect.a041774
Ana Westenberger, Norbert Brüggemann, Christine Klein
The genetic architecture of Parkinson's disease (PD) comprises five autosomal dominantly inherited forms with a clinical picture overall resembling idiopathic disease (PARK-SNCA, PARK-LRRK2, PARK-VPS35, PARK-CHCHD2, and PARK-RAB32) and three recessive types (PARK-PRKN, PARK-PINK1, and PARK-PARK7), several monogenic forms causing atypical parkinsonism, as well as a plethora of known genetic risk factors, most notably SNCA and GBA1 including a recently discovered risk variant unique to individuals of African descent, as well as polygenic scores. The Movement Disorder Society Genetic mutation database (MDSGene) (www.mdsgene.org) provides PD genotype–phenotype relationships, whereas global PD genetics networks, such as the Global Parkinson's Genetics Program (www.gp2.org) elucidate PD genetic factors at an unprecedented scale. Two large studies in relatively unselected, multicenter PD samples estimate the frequency of genetic forms, including PARK-GBA1, at ∼15%. PD genetics are becoming increasingly actionable, with the first gene-targeted clinical trials underway. Furthermore, PD genetics has recently been incorporated into a new biological classification of PD.
帕金森病(PD)的遗传结构包括五种常染色体显性遗传类型(PARK-SNCA、PARK-LRRK2、PARK-VPS35、PARK-CHCHD2 和 PARK-RAB32)和三种隐性遗传类型(PARK-PRKN、PARK-PINK1和PARK-PARK7)、几种导致非典型帕金森病的单基因型,以及大量已知的遗传风险因素,其中最主要的是SNCA和GBA1,包括最近发现的一种非洲后裔特有的风险变异,以及多基因评分。运动障碍协会基因突变数据库(MDSGene)(www.mdsgene.org)提供了帕金森病基因型与表型的关系,而全球帕金森病遗传学网络,如全球帕金森病遗传学计划(www.gp2.org),则以前所未有的规模阐明了帕金森病的遗传因素。在相对未经选择的多中心帕金森病样本中进行的两项大型研究估计,包括 PARK-GBA1 在内的遗传形式的频率为 15%。帕金森病遗传学越来越具有可操作性,首批基因靶向临床试验正在进行中。此外,帕金森病遗传学最近已被纳入新的帕金森病生物学分类中。
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引用次数: 0
The Role of B Lymphocytes in Type 1 Diabetes B 淋巴细胞在 1 型糖尿病中的作用
IF 5.4 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-08-12 DOI: 10.1101/cshperspect.a041593
Mia J. Smith, Joanne Boldison, F. Susan Wong
While autoreactive T cells are known to induce β-cell death in type 1 diabetes (T1D), self-reactive B cells also play an important role in the pathogenesis of T1D. Studies have shown that individuals living with T1D have an increased frequency of self-reactive B cells that escape from the bone marrow and populate peripheral organs, become activated, and participate in disease. These failed tolerance mechanisms may be attributed to genetic risk alleles that are associated with the development of T1D. Once in the periphery, these self-reactive B cells act as important antigen-presenting cells to autoreactive T cells and produce autoantibodies that are used to predict individuals at risk for or diagnosed with T1D. Here, we discuss the evidence that B cells are important in the pathogenesis of T1D, how these cells escape normal tolerance mechanisms, their role in disease progression, and how targeting these cells and/or monitoring them as biomarkers for response to therapy will be of clinical benefit.
众所周知,自身反应性 T 细胞会诱导 1 型糖尿病(T1D)β 细胞死亡,而自身反应性 B 细胞在 T1D 的发病机制中也扮演着重要角色。研究表明,T1D 患者体内自我反应性 B 细胞的出现频率增加,这些 B 细胞从骨髓中逃逸出来,在外周器官中增殖、活化并参与疾病的发生。这些失效的耐受机制可能与 T1D 发病相关的遗传风险等位基因有关。一旦进入外周,这些自我反应性 B 细胞就会成为自反应性 T 细胞的重要抗原递呈细胞,并产生自身抗体,用于预测有 T1D 风险或被诊断为 T1D 的个体。在这里,我们将讨论 B 细胞在 T1D 发病机制中起重要作用的证据、这些细胞如何逃避正常的耐受机制、它们在疾病进展中的作用,以及靶向这些细胞和/或监测它们作为治疗反应的生物标志物将如何对临床有益。
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引用次数: 0
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