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High-pressure synthesis and crystal structure of iron sp3-carbonate (Fe2[C4O10]) featuring pyramidal [C4O10]4- anions.
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-05 DOI: 10.1038/s42004-025-01450-0
Valentin Kovalev, Dominik Spahr, Bjoern Winkler, Lkhamsuren Bayarjargal, Lena Wedek, Alena Aslandukova, Anna Pakhomova, Gaston Garbarino, Elena Bykova

The behavior of iron carbonates at high pressures is relevant for geological processes occurring in Earth interiors. Here, cubic iron sp3-carbonate Fe2[C4O10] was synthesized in diamond anvil cell by reacting Fe2O3 and CO2 at 65(4) GPa and 3000(±500) K, simulating the environment of localized thermal anomalies in the mantle. The crystal structure, determined by in situ single-crystal X-ray diffraction, features pyramidal [C4O10]4- anions. The experimental crystal structure corresponds to a structural model from density functional theory calculations. Experimentally determined values for zero-pressure volume V0 and bulk modulus K0 are: V0 = 1059(17) Å3, K0 = 160(18) GPa, The DFT-calculated Raman spectrum, modeled with zinc substituting iron, matches the experimental one, supporting the structural model's accuracy. Fe2[C4O10] remained stable upon decompression down to 25 GPa, below which it amorphized. DFT calculations also reveal a spin crossover of Fe2+ cations at 95 GPa, which is significantly higher than in other Fe2+-containing carbonates.

{"title":"High-pressure synthesis and crystal structure of iron sp<sup>3</sup>-carbonate (Fe<sub>2</sub>[C<sub>4</sub>O<sub>10</sub>]) featuring pyramidal [C<sub>4</sub>O<sub>10</sub>]<sup>4-</sup> anions.","authors":"Valentin Kovalev, Dominik Spahr, Bjoern Winkler, Lkhamsuren Bayarjargal, Lena Wedek, Alena Aslandukova, Anna Pakhomova, Gaston Garbarino, Elena Bykova","doi":"10.1038/s42004-025-01450-0","DOIUrl":"10.1038/s42004-025-01450-0","url":null,"abstract":"<p><p>The behavior of iron carbonates at high pressures is relevant for geological processes occurring in Earth interiors. Here, cubic iron sp<sup>3</sup>-carbonate Fe<sub>2</sub>[C<sub>4</sub>O<sub>10</sub>] was synthesized in diamond anvil cell by reacting Fe<sub>2</sub>O<sub>3</sub> and CO<sub>2</sub> at 65(4) GPa and 3000(±500) K, simulating the environment of localized thermal anomalies in the mantle. The crystal structure, determined by in situ single-crystal X-ray diffraction, features pyramidal [C<sub>4</sub>O<sub>10</sub>]<sup>4-</sup> anions. The experimental crystal structure corresponds to a structural model from density functional theory calculations. Experimentally determined values for zero-pressure volume V<sub>0</sub> and bulk modulus K<sub>0</sub> are: V<sub>0</sub> = 1059(17) Å<sup>3</sup>, K<sub>0</sub> = 160(18) GPa, The DFT-calculated Raman spectrum, modeled with zinc substituting iron, matches the experimental one, supporting the structural model's accuracy. Fe<sub>2</sub>[C<sub>4</sub>O<sub>10</sub>] remained stable upon decompression down to 25 GPa, below which it amorphized. DFT calculations also reveal a spin crossover of Fe<sup>2+</sup> cations at 95 GPa, which is significantly higher than in other Fe<sup>2+</sup>-containing carbonates.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"66"},"PeriodicalIF":5.9,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11883023/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143566286","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Using high pressure to investigate the stability of a high entropy wurtzite structured (MnFeCuAgZnCd)S.
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-05 DOI: 10.1038/s42004-025-01463-9
Mark A Buckingham, Joshua J Shea, Kho Zhi Quan, Pok Man Ethan Lo, Joshua Swindell, Weichen Xiao, David J Lewis, Alex S Eggeman, Simon A Hunt

High entropy metal chalcogenides are an emergent class of materials that have shown exceptional promise in applications such as energy storage, catalysis, and thermoelectric energy conversion. However, the stability of these materials to factors other than temperature are as yet unknown. Here we set out to assess the stability of the high entropy metal sulfide (MnFeCuAgZnCd)S with high pressure (up to 9 GPa), compared to an enthalpically stabilised Ag3CuS2, and a quasi-stable (MnFeZnCd)S. Compression and pressure-annealing of (MnFeCuAgZnCd)S showed diffusion-controlled time and pressure dependent exsolution of jalpaite (Ag3CuS2) from the bulk. Bulk materials characterisation found minor phase impurities and possible elemental localisations in (MnFeCuAgZnCd)S prior to pressure-annealing. To gain deeper understanding of the material pre- and post-pressure annealing at the nanoscale an advanced technique was used which combined machine learning, unsupervised clustering analysis of STEM-EDX mapping with scanning precession electron diffraction (SPED), which revealed a chemically distinct post-pressure annealed jalpaite exsolved from (MnFeCuAgZnCd)S.

{"title":"Using high pressure to investigate the stability of a high entropy wurtzite structured (MnFeCuAgZnCd)S.","authors":"Mark A Buckingham, Joshua J Shea, Kho Zhi Quan, Pok Man Ethan Lo, Joshua Swindell, Weichen Xiao, David J Lewis, Alex S Eggeman, Simon A Hunt","doi":"10.1038/s42004-025-01463-9","DOIUrl":"10.1038/s42004-025-01463-9","url":null,"abstract":"<p><p>High entropy metal chalcogenides are an emergent class of materials that have shown exceptional promise in applications such as energy storage, catalysis, and thermoelectric energy conversion. However, the stability of these materials to factors other than temperature are as yet unknown. Here we set out to assess the stability of the high entropy metal sulfide (MnFeCuAgZnCd)S with high pressure (up to 9 GPa), compared to an enthalpically stabilised Ag<sub>3</sub>CuS<sub>2</sub>, and a quasi-stable (MnFeZnCd)S. Compression and pressure-annealing of (MnFeCuAgZnCd)S showed diffusion-controlled time and pressure dependent exsolution of jalpaite (Ag<sub>3</sub>CuS<sub>2</sub>) from the bulk. Bulk materials characterisation found minor phase impurities and possible elemental localisations in (MnFeCuAgZnCd)S prior to pressure-annealing. To gain deeper understanding of the material pre- and post-pressure annealing at the nanoscale an advanced technique was used which combined machine learning, unsupervised clustering analysis of STEM-EDX mapping with scanning precession electron diffraction (SPED), which revealed a chemically distinct post-pressure annealed jalpaite exsolved from (MnFeCuAgZnCd)S.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"65"},"PeriodicalIF":5.9,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11882918/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143566289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identifying G-quadruplex-interacting proteins in cancer-related gene promoters.
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-01 DOI: 10.1038/s42004-025-01462-w
Simona Marzano, Gabriella Pinto, Anna Di Porzio, Jussara Amato, Antonio Randazzo, Angela Amoresano, Bruno Pagano

G-quadruplexes (G4s) are noncanonical DNA or RNA secondary structures involved in numerous biological processes. Their recognition by G4-related proteins (G4RPs) is essential for modulating biological pathways, particularly those associated with transcription and cancer progression. Identifying G4RPs is crucial for understanding their role in diseases like cancer, as these proteins may represent promising therapeutic targets. In this study, a proteomic-based fishing-for-partners approach was employed to identify putative interactors of G4-forming DNA sequences from the promoter regions of cancer-related genes DAP, HIF-1α, JAZF-1, and PDGF-A. A total of eighty-six G4RPs were identified, including nineteen known RNA and/or DNA G4 interactors. Notably, fourteen proteins were identified as potential interactors of all four investigated G4-forming DNA, seven of which were novel G4RPs. Direct interactions with G4s were validated for five of these proteins (AHNAK, GAPDH, HNRNP M, LMNA, and PPIA) using surface plasmon resonance experiments, which showed nanomolar binding affinities. This study not only validated known G4RPs but also led to the discovery of new G4/protein interactions, providing the basis for further investigation into their biological significance and potential implications in disease-associated pathways.

{"title":"Identifying G-quadruplex-interacting proteins in cancer-related gene promoters.","authors":"Simona Marzano, Gabriella Pinto, Anna Di Porzio, Jussara Amato, Antonio Randazzo, Angela Amoresano, Bruno Pagano","doi":"10.1038/s42004-025-01462-w","DOIUrl":"10.1038/s42004-025-01462-w","url":null,"abstract":"<p><p>G-quadruplexes (G4s) are noncanonical DNA or RNA secondary structures involved in numerous biological processes. Their recognition by G4-related proteins (G4RPs) is essential for modulating biological pathways, particularly those associated with transcription and cancer progression. Identifying G4RPs is crucial for understanding their role in diseases like cancer, as these proteins may represent promising therapeutic targets. In this study, a proteomic-based fishing-for-partners approach was employed to identify putative interactors of G4-forming DNA sequences from the promoter regions of cancer-related genes DAP, HIF-1α, JAZF-1, and PDGF-A. A total of eighty-six G4RPs were identified, including nineteen known RNA and/or DNA G4 interactors. Notably, fourteen proteins were identified as potential interactors of all four investigated G4-forming DNA, seven of which were novel G4RPs. Direct interactions with G4s were validated for five of these proteins (AHNAK, GAPDH, HNRNP M, LMNA, and PPIA) using surface plasmon resonance experiments, which showed nanomolar binding affinities. This study not only validated known G4RPs but also led to the discovery of new G4/protein interactions, providing the basis for further investigation into their biological significance and potential implications in disease-associated pathways.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"64"},"PeriodicalIF":5.9,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11873050/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143536436","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metastable phase-separated droplet generation and long-time DNA enrichment by laser-induced Soret effect. 利用激光诱导的索雷特效应生成可转移的相分离液滴并长时间富集 DNA。
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-02-28 DOI: 10.1038/s42004-025-01438-w
Mika Kobayashi, Yoshihiro Minagawa, Hiroyuki Noji

Spatiotemporally controlled laser-induced phase separation (LIPS) offers unique research avenues and has potential for biological and biomedical applications. However, LIPS conditions often have drawbacks for practical use, which limit their applications. For instance, LIPS droplets are unstable and diminish after the laser is terminated. Here, we developed a novel LIPS method using laser-induced Soret effect with a simple setup to solve these problems. We generate liquid-liquid phase-separated (LLPS) droplets using LIPS in an aqueous two-phase system (ATPS) of dextran (DEX) and polyethylene glycol (PEG). When DEX-rich droplets were generated in the DEX/PEG mix on the phase boundary, the droplets showed unprecedently high longevity; the DEX droplets were retained over 48 h. This counterintuitive behaviour suggests that the droplet is in an unknown metastable state. By exploiting the capability of DEX-rich droplets to enrich nucleic acid polymers, we achieved stable DNA enrichment in LIPS DEX droplets with a high enrichment factor of 1400 ± 400. Further, we patterned DNA-carrying DEX-rich droplets into a designed structure to demonstrate the stability and spatiotemporal controllability of DEX-rich droplet formation. This is the first report for LIPS droplet generation in a DEX/PEG system, opening new avenues for biological and medical applications of LIPS.

{"title":"Metastable phase-separated droplet generation and long-time DNA enrichment by laser-induced Soret effect.","authors":"Mika Kobayashi, Yoshihiro Minagawa, Hiroyuki Noji","doi":"10.1038/s42004-025-01438-w","DOIUrl":"10.1038/s42004-025-01438-w","url":null,"abstract":"<p><p>Spatiotemporally controlled laser-induced phase separation (LIPS) offers unique research avenues and has potential for biological and biomedical applications. However, LIPS conditions often have drawbacks for practical use, which limit their applications. For instance, LIPS droplets are unstable and diminish after the laser is terminated. Here, we developed a novel LIPS method using laser-induced Soret effect with a simple setup to solve these problems. We generate liquid-liquid phase-separated (LLPS) droplets using LIPS in an aqueous two-phase system (ATPS) of dextran (DEX) and polyethylene glycol (PEG). When DEX-rich droplets were generated in the DEX/PEG mix on the phase boundary, the droplets showed unprecedently high longevity; the DEX droplets were retained over 48 h. This counterintuitive behaviour suggests that the droplet is in an unknown metastable state. By exploiting the capability of DEX-rich droplets to enrich nucleic acid polymers, we achieved stable DNA enrichment in LIPS DEX droplets with a high enrichment factor of 1400 ± 400. Further, we patterned DNA-carrying DEX-rich droplets into a designed structure to demonstrate the stability and spatiotemporal controllability of DEX-rich droplet formation. This is the first report for LIPS droplet generation in a DEX/PEG system, opening new avenues for biological and medical applications of LIPS.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"61"},"PeriodicalIF":5.9,"publicationDate":"2025-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11871339/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143531225","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Author Correction: Proteome-wide non-cleavable crosslink identification with MS Annika 3.0 reveals the structure of the C. elegans Box C/D complex.
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-02-27 DOI: 10.1038/s42004-025-01461-x
Micha J Birklbauer, Fränze Müller, Sowmya Sivakumar Geetha, Manuel Matzinger, Karl Mechtler, Viktoria Dorfer
{"title":"Author Correction: Proteome-wide non-cleavable crosslink identification with MS Annika 3.0 reveals the structure of the C. elegans Box C/D complex.","authors":"Micha J Birklbauer, Fränze Müller, Sowmya Sivakumar Geetha, Manuel Matzinger, Karl Mechtler, Viktoria Dorfer","doi":"10.1038/s42004-025-01461-x","DOIUrl":"10.1038/s42004-025-01461-x","url":null,"abstract":"","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"62"},"PeriodicalIF":5.9,"publicationDate":"2025-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11868604/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143522634","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Revealing the molecular interplay of coverage, wettability, and capacitive response at the Pt(111)-water solution interface under bias.
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-02-24 DOI: 10.1038/s42004-025-01446-w
Federico Raffone, Rémi Khatib, Marialore Sulpizi, Clotilde Cucinotta

While electrified interfaces are crucial for electrocatalysis and corrosion, their molecular morphology remains largely unknown. Through highly realistic ab initio molecular dynamics simulations of the Pt(111)-water solution interface in reducing conditions, we reveal a deep interconnection among electrode coverage, wettability, capacitive response, and catalytic activity. We identify computationally the experimentally hypothesised states for adsorbed hydrogen on Pt, HUPD and HOPD, revealing their role in governing interfacial water reorientation and hydrogen evolution. The transition between these two H states with increasing potential, induces a shift from a hydrophobic to a hydrophilic interface and correlates with a change in the primary electrode screening mechanism. This results in a slope change in differential capacitance, marking the onset of the experimentally observed peak around the potential of zero charge. Our work produces crucial insights for advancing electrocatalytic energy conversion, developing deep understanding of electrified interfaces.

{"title":"Revealing the molecular interplay of coverage, wettability, and capacitive response at the Pt(111)-water solution interface under bias.","authors":"Federico Raffone, Rémi Khatib, Marialore Sulpizi, Clotilde Cucinotta","doi":"10.1038/s42004-025-01446-w","DOIUrl":"10.1038/s42004-025-01446-w","url":null,"abstract":"<p><p>While electrified interfaces are crucial for electrocatalysis and corrosion, their molecular morphology remains largely unknown. Through highly realistic ab initio molecular dynamics simulations of the Pt(111)-water solution interface in reducing conditions, we reveal a deep interconnection among electrode coverage, wettability, capacitive response, and catalytic activity. We identify computationally the experimentally hypothesised states for adsorbed hydrogen on Pt, H<sub>UPD</sub> and H<sub>OPD</sub>, revealing their role in governing interfacial water reorientation and hydrogen evolution. The transition between these two H states with increasing potential, induces a shift from a hydrophobic to a hydrophilic interface and correlates with a change in the primary electrode screening mechanism. This results in a slope change in differential capacitance, marking the onset of the experimentally observed peak around the potential of zero charge. Our work produces crucial insights for advancing electrocatalytic energy conversion, developing deep understanding of electrified interfaces.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"58"},"PeriodicalIF":5.9,"publicationDate":"2025-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11850831/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143491038","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Author Correction: Structural phase transition in NH4F under extreme pressure conditions.
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-02-24 DOI: 10.1038/s42004-025-01457-7
Umbertoluca Ranieri, Christophe Bellin, Lewis J Conway, Richard Gaal, John S Loveday, Andreas Hermann, Abhay Shukla, Livia E Bove
{"title":"Author Correction: Structural phase transition in NH<sub>4</sub>F under extreme pressure conditions.","authors":"Umbertoluca Ranieri, Christophe Bellin, Lewis J Conway, Richard Gaal, John S Loveday, Andreas Hermann, Abhay Shukla, Livia E Bove","doi":"10.1038/s42004-025-01457-7","DOIUrl":"10.1038/s42004-025-01457-7","url":null,"abstract":"","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"57"},"PeriodicalIF":5.9,"publicationDate":"2025-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11850805/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143491034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nanomolar inhibitor of the galectin-8 N-terminal domain binds via a non-canonical cation-π interaction. galectin-8 N 端结构域的纳摩尔抑制剂通过非典型阳离子-π相互作用结合。
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-02-24 DOI: 10.1038/s42004-025-01458-6
Edvin Purić, Mujtaba Hassan, Fredrik Sjövall, Tihomir Tomašič, Mojca Pevec, Jurij Lah, Jaume Adrover Forteza, Anders Sundin, Hakon Leffler, Ulf J Nilsson, Derek T Logan, Marko Anderluh

Galectin-8 is a tandem-repeat galectin consisting of two distinct carbohydrate recognition domains and is a potential drug target. We have developed a library of galectin-8N inhibitors that exhibit high nanomolar Kd values as determined by a competitive fluorescence polarization assay. A detailed thermodynamic analysis of the binding of D-galactosides to galectin-8N by isothermal titration calorimetry reveals important differences in enthalpic and/or entropic contributions to binding. Contrary to expectations, the binding of 2-O-propargyl-D-galactoside was found to strongly increase the binding enthalpy, whereas the binding of 2-O-carboxymethylene-D-galactoside was surprisingly less enthalpy-driven. The results of our work suggest that the ethynyl group can successfully replace the carboxylate group when targeting the water-exposed guanidine moiety of a critical arginine residue. This results in only a minor loss of affinity and an adjusted enthalpic contribution to the overall binding due to non-canonical cation-π interactions, as evidenced by the obtained crystal structure of 2-O-propargyl-D-galactoside in complex with the N-terminal domain of galectin-8. Such an interaction has neither been identified nor discussed to date in a small-molecule ligand-protein complex.

{"title":"Nanomolar inhibitor of the galectin-8 N-terminal domain binds via a non-canonical cation-π interaction.","authors":"Edvin Purić, Mujtaba Hassan, Fredrik Sjövall, Tihomir Tomašič, Mojca Pevec, Jurij Lah, Jaume Adrover Forteza, Anders Sundin, Hakon Leffler, Ulf J Nilsson, Derek T Logan, Marko Anderluh","doi":"10.1038/s42004-025-01458-6","DOIUrl":"10.1038/s42004-025-01458-6","url":null,"abstract":"<p><p>Galectin-8 is a tandem-repeat galectin consisting of two distinct carbohydrate recognition domains and is a potential drug target. We have developed a library of galectin-8N inhibitors that exhibit high nanomolar K<sub>d</sub> values as determined by a competitive fluorescence polarization assay. A detailed thermodynamic analysis of the binding of D-galactosides to galectin-8N by isothermal titration calorimetry reveals important differences in enthalpic and/or entropic contributions to binding. Contrary to expectations, the binding of 2-O-propargyl-D-galactoside was found to strongly increase the binding enthalpy, whereas the binding of 2-O-carboxymethylene-D-galactoside was surprisingly less enthalpy-driven. The results of our work suggest that the ethynyl group can successfully replace the carboxylate group when targeting the water-exposed guanidine moiety of a critical arginine residue. This results in only a minor loss of affinity and an adjusted enthalpic contribution to the overall binding due to non-canonical cation-π interactions, as evidenced by the obtained crystal structure of 2-O-propargyl-D-galactoside in complex with the N-terminal domain of galectin-8. Such an interaction has neither been identified nor discussed to date in a small-molecule ligand-protein complex.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"59"},"PeriodicalIF":5.9,"publicationDate":"2025-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11850616/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143491037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mechanisms of electrochemical hydrogenation of aromatic compound mixtures over a bimetallic PtRu catalyst.
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-02-23 DOI: 10.1038/s42004-025-01413-5
Cesar Catizane, Ying Jiang, Joy Sumner

Efficient electrochemical hydrogenation (ECH) of organic compounds is essential for sustainability, promoting chemical feedstock circularity and synthetic fuel production. This study investigates the ECH of benzoic acid, phenol, guaiacol, and their mixtures, key components in upgradeable oils, using a carbon-supported PtRu catalyst under varying initial concentrations, temperatures, and current densities. Phenol achieved the highest conversion (83.17%) with a 60% Faradaic efficiency (FE). In mixtures, benzoic acid + phenol yielded the best performance (64.19% conversion, 74% FE), indicating a synergistic effect. Notably, BA consistently exhibited 100% selectivity for cyclohexane carboxylic acid (CCA) across all conditions. Density functional theory (DFT) calculations revealed that parallel adsorption of BA on the cathode (-1.12 eV) is more stable than perpendicular positioning (-0.58 eV), explaining the high selectivity for CCA. These findings provide a foundation for future developments in ECH of real pyrolysis oil.

{"title":"Mechanisms of electrochemical hydrogenation of aromatic compound mixtures over a bimetallic PtRu catalyst.","authors":"Cesar Catizane, Ying Jiang, Joy Sumner","doi":"10.1038/s42004-025-01413-5","DOIUrl":"10.1038/s42004-025-01413-5","url":null,"abstract":"<p><p>Efficient electrochemical hydrogenation (ECH) of organic compounds is essential for sustainability, promoting chemical feedstock circularity and synthetic fuel production. This study investigates the ECH of benzoic acid, phenol, guaiacol, and their mixtures, key components in upgradeable oils, using a carbon-supported PtRu catalyst under varying initial concentrations, temperatures, and current densities. Phenol achieved the highest conversion (83.17%) with a 60% Faradaic efficiency (FE). In mixtures, benzoic acid + phenol yielded the best performance (64.19% conversion, 74% FE), indicating a synergistic effect. Notably, BA consistently exhibited 100% selectivity for cyclohexane carboxylic acid (CCA) across all conditions. Density functional theory (DFT) calculations revealed that parallel adsorption of BA on the cathode (-1.12 eV) is more stable than perpendicular positioning (-0.58 eV), explaining the high selectivity for CCA. These findings provide a foundation for future developments in ECH of real pyrolysis oil.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"56"},"PeriodicalIF":5.9,"publicationDate":"2025-02-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11847916/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143482406","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Women in chemistry: Q&A with Professor Carolina Horta Andrade.
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-02-22 DOI: 10.1038/s42004-025-01452-y
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Communications Chemistry
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