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Biosynthesis of iron-chelating terramides A-C and their role in Aspergillus terreus infection 铁螯合萜酰胺 A-C 的生物合成及其在赤霉菌感染中的作用
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-30 DOI: 10.1038/s42004-024-01311-2
Yi Han, Yaojie Guo, Nan Zhang, Fan Xu, Jarukitt Limwachiranon, Zhenzhen Xiong, Liru Xu, Xu-Ming Mao, Daniel H. Scharf
Fungal natural products from various species often feature hydroxamic acid motifs that have the ability to chelate iron. These compounds have an array of medicinally and ecologically relevant activities. Through genome mining, gene deletion in the host Aspergillus terreus, and heterologous expression experiments, this study has revealed that a nonribosomal peptide synthetase (NRPS) TamA and a specialized cytochrome P450 monooxygenase TamB catalyze the sequential biosynthetic reactions in the formation of terramides A-C, a series of diketopiperazines (DKPs) with hydroxamic acid motifs. Feeding experiments showed that TamB catalyzes an unprecedented di-hydroxylation of the amide nitrogens in the diketopiperazine core. This tailoring reaction led to the formation of two bidentate iron-binding sites per molecule with an unusual iron-binding stoichiometry. The structure of the terramide A-Fe complex was characterized by liquid chromatography-mass spectrometry (LC-MS), Fourier transform infrared spectroscopy (FT-IR), Raman spectroscopy and electron paramagnetic resonance spectroscopy (EPR). Antimicrobial assays showed that the iron-binding motifs are crucial for the activity against bacteria and fungi. Murine infection experiments indicated that terramide production is crucial for the virulence of A. terreus and could be a potential antifungal drug target. Terramides A-C are produced by Aspergillus terreus and feature hydroxamic acid motifs in diketopiperazines to chelate iron; however, their biosynthesis is not fully understood. Here, the authors probe the function of two key enzymes TamA and TamB and propose the biosynthesis of terramides A-C as well as their function in the virulence of A. terreus.
来自不同物种的真菌天然产物通常具有羟肟酸基团,能够螯合铁。这些化合物具有一系列药用和生态相关活性。通过基因组挖掘、宿主土曲霉(Aspergillus terreus)中的基因缺失和异源表达实验,本研究揭示了非核糖体肽合成酶(NRPS)TamA 和专门的细胞色素 P450 单加氧酶 TamB 催化了形成特拉米德 A-C 的连续生物合成反应,特拉米德 A-C 是一系列具有羟肟酸基团的二酮哌嗪类化合物(DKPs)。进料实验表明,TamB 催化了二酮哌嗪核心中的酰胺硝基发生前所未有的二羟基化反应。这种定制反应导致每个分子形成两个双齿铁结合位点,并具有不同寻常的铁结合比例。液相色谱-质谱(LC-MS)、傅立叶变换红外光谱(FT-IR)、拉曼光谱和电子顺磁共振光谱(EPR)对 Terramide A-Fe 复合物的结构进行了表征。抗菌试验表明,铁结合基团对细菌和真菌的活性至关重要。小鼠感染实验表明,特拉米德的产生对赤霉病菌的毒力至关重要,可能成为潜在的抗真菌药物靶标。Terramides A-C 由赤曲霉产生,以二酮哌嗪中的羟肟酸基团为特征,可以螯合铁;然而,它们的生物合成尚未完全清楚。在本文中,作者探究了 TamA 和 TamB 这两种关键酶的功能,并提出了赤霉酰胺 A-C 的生物合成及其在赤霉菌毒力中的功能。
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引用次数: 0
The molecular picture of the local environment in a stable model coacervate 稳定模型凝聚态局部环境的分子图谱
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-30 DOI: 10.1038/s42004-024-01304-1
Atanu Baksi, Hasan Zerze, Aman Agrawal, Alamgir Karim, Gül H. Zerze
Complex coacervates play essential roles in various biological processes and applications. Although substantial progress has been made in understanding the molecular interactions driving complex coacervation, the mechanisms stabilizing coacervates against coalescence remain experimentally challenging and not fully elucidated. We recently showed that polydiallyldimethylammonium chloride (PDDA) and adenosine triphosphate (ATP) coacervates stabilize upon their transfer to deionized (DI) water. Here, we perform molecular dynamics simulations of PDDA-ATP coacervates in supernatant and DI water, to understand the ion dynamics and structure within stable coacervates. We found that transferring the coacervates to DI water results in an immediate ejection of a significant fraction of small ions (Na+ and Cl−) from the surface of the coacervates to DI water. We also observed a notable reduction in the mobility of these counterions in coacervates when in DI water, both in the cluster-forming and slab simulations, together with a lowered displacement of PDDA and ATP. These results suggest that the initial ejection of the ions from the coacervates in DI water may induce an interfacial skin layer formation, inhibiting further mobility of ions in the skin layer. Transferring coacervates based on polydiallyldimethylammonium chloride and adenosine triphosphate into deionized water has been experimentally demonstrated to stabilize them against coalescence. Here, molecular modeling and simulations are used to study the coacervation and stabilization of the relevant polyelectrolyte mixture, systematically investigating the structural and dynamic properties that lead to stability.
复合凝聚态在各种生物过程和应用中发挥着至关重要的作用。尽管在理解驱动复合凝聚的分子相互作用方面取得了重大进展,但稳定凝聚体防止凝聚的机制仍具有实验挑战性,尚未完全阐明。我们最近的研究表明,聚二烯丙基二甲基氯化铵(PDDA)和三磷酸腺苷(ATP)凝聚体在转移到去离子水中后会变得稳定。在此,我们对上清液和去离子水中的 PDDA-ATP 凝聚态进行了分子动力学模拟,以了解稳定凝聚态中的离子动力学和结构。我们发现,将共蒸物转移到去离子水中会导致大量小离子(Na+ 和 Cl-)立即从共蒸物表面喷射到去离子水中。在成团模拟和板块模拟中,我们还观察到这些反离子在去离子水中的流动性明显降低,同时 PDDA 和 ATP 的位移也降低了。这些结果表明,离子最初从去离子水中的共凝聚体中喷出时,可能会诱发界面表皮层的形成,从而抑制离子在表皮层中的进一步移动。实验证明,将基于聚二烯丙基二甲基氯化铵和三磷酸腺苷的凝聚态水转移到去离子水中可以使其稳定,防止凝聚。在此,我们利用分子建模和模拟来研究相关聚电解质混合物的凝聚和稳定,系统地研究了导致稳定的结构和动态特性。
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引用次数: 0
On-surface synthesis of porous graphene nanoribbons mediated by phenyl migration 苯基迁移介导的多孔石墨烯纳米带的表面合成
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-29 DOI: 10.1038/s42004-024-01284-2
César Moreno, Xabier Diaz de Cerio, Maria Tenorio, Fei Gao, Manuel Vilas-Varela, Ane Sarasola, Diego Peña, Aran Garcia-Lekue, Aitor Mugarza
Advancements in the on-surface synthesis of atomically precise graphene nanostructures are propelled by the introduction of innovative precursor designs and reaction types. Until now, the latter has been confined to cross-coupling and cyclization reactions that involve the cleavage of specific atoms or groups. In this article, we elucidate how the migration of phenyl substituents attached to graphene nanoribbons can be harnessed to generate arrays of [18]-annulene pores at the edges of the nanostructures. This sequential pathway is revealed through a comprehensive study employing bond-resolved scanning tunneling microscopy and ab-initio computational techniques. The yield of pore formation is maximized by anchoring the graphene nanoribbons at steps of vicinal surfaces, underscoring the potential of these substrates to guide reaction paths. Our study introduces a new reaction to the on-surface synthesis toolbox along with a sequential route, altogether enabling the extension of this strategy towards the formation of other porous nanostructures. The on-surface synthesis of graphene nanoribbons typically relies on Ullmann polymerization followed by an internal cyclodehydrogenation. Here, following these two steps, the authors expand the synthetic protocol by adding controlled phenyl migration and intraribbon aryl-aryl dehydrogenative coupling to afford graphene nanoribbons with periodic arrays of [18]annulene pores at the edges.
创新前驱体设计和反应类型的引入推动了原子精度石墨烯纳米结构的表面合成技术的进步。迄今为止,后者仅限于涉及特定原子或基团裂解的交叉耦合和环化反应。在本文中,我们阐明了如何利用附着在石墨烯纳米带上的苯基取代基的迁移,在纳米结构的边缘生成[18]-annulene 孔阵列。利用键分辨扫描隧道显微镜和非线性计算技术进行的一项综合研究揭示了这一顺序途径。通过将石墨烯纳米带锚定在临近表面的台阶上,孔隙形成的产率达到了最大化,凸显了这些基底引导反应路径的潜力。我们的研究为表面合成工具箱引入了一种新的反应以及一条连续路线,从而使这一策略能够扩展到其他多孔纳米结构的形成。石墨烯纳米带的表面合成通常依赖于乌尔曼聚合,然后是内部环氢化。在这里,作者在这两个步骤之后扩展了合成方案,增加了受控苯基迁移和带内芳基-芳基脱氢偶联,从而得到了边缘具有周期性[18]环烯孔阵列的石墨烯纳米带。
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引用次数: 0
Photoaging enhances the leaching of di(2-ethylhexyl) phthalate and transformation products from polyvinyl chloride microplastics into aquatic environments 光照增强了聚氯乙烯微塑料中邻苯二甲酸二(2-乙基己基)酯和转化产物在水生环境中的沥滤作用
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-27 DOI: 10.1038/s42004-024-01310-3
Charlotte Henkel, Thorsten Hüffer, Ruoting Peng, Xiaoyu Gao, Subhasis Ghoshal, Thilo Hofmann
Increasing chemical pollution is a threat to sustainable water resources worldwide. Plastics and harmful additives released from plastics add to this burden and might pose a risk to aquatic organisms, and human health. Phthalates, which are common plasticizers and endocrine-disrupting chemicals, are released from polyvinyl chloride (PVC) microplastics and are a cause of concern. Therefore, the leaching kinetics of additives, including the influence of environmental weathering, are key to assessing exposure concentrations but remain largely unknown. We show that photoaging strongly enhances the leaching rates of di(2-ethylhexyl) phthalate (DEHP) by a factor of 1.5, and newly-formed harmful transformation products, such as mono(2-ethylhexyl) phthalate (MEHP), phthalic acid, and phthalic anhydride from PVC microplastics into the aquatic environment. Leaching half-lives of DEHP reduced from 449 years for pristine PVC to 121 years for photoaged PVC. Aqueous boundary layer diffusion (ABLD) is the limiting mass transfer process for the release of DEHP from pristine and photoaged PVC microplastics. The leaching of transformation products is limited by intraparticle diffusion (IPD). The calculated mass transfer rates can be used to predict exposure concentrations of harmful additives in the aquatic environment. The environmental weathering of plastics and the leaching kinetics of additives are key to assessing exposure concentrations. Here, the authors show that photoaging enhances the leaching rate of the common additive di(2-ethylhexyl) phthalate (DEHP) by a factor of 1.5, and newly-formed harmful transformation products, such as mono(2-ethylhexyl) phthalate (MEHP), phthalic acid, and phthalic anhydride, are released from PVC microplastics into the aquatic environment.
日益严重的化学污染是对全球可持续水资源的威胁。塑料和塑料中释放的有害添加剂加重了这一负担,并可能对水生生物和人类健康构成威胁。邻苯二甲酸盐是常见的增塑剂和干扰内分泌的化学物质,从聚氯乙烯(PVC)微塑料中释放出来,令人担忧。因此,添加剂的浸出动力学,包括环境风化的影响,是评估暴露浓度的关键,但在很大程度上仍是未知数。我们的研究表明,光老化会使邻苯二甲酸二(2-乙基己基)酯(DEHP)和新生成的有害转化产物(如邻苯二甲酸单(2-乙基己基)酯(MEHP)、邻苯二甲酸和邻苯二甲酸酐)从聚氯乙烯微塑料中浸出到水生环境中的速率提高 1.5 倍。DEHP 的沥滤半衰期从原始 PVC 的 449 年缩短到光老化 PVC 的 121 年。水体边界层扩散(ABLD)是原始和光老化聚氯乙烯微塑料释放 DEHP 的限制性传质过程。转化产物的沥滤受到颗粒内扩散(IPD)的限制。计算得出的传质速率可用于预测水生环境中有害添加剂的暴露浓度。塑料的环境风化和添加剂的浸出动力学是评估暴露浓度的关键。作者在本文中指出,光老化会使常见添加剂邻苯二甲酸二(2-乙基己基)酯(DEHP)的浸出率提高 1.5 倍,新形成的有害转化产物,如邻苯二甲酸单(2-乙基己基)酯(MEHP)、邻苯二甲酸和邻苯二甲酸酐,会从聚氯乙烯微塑料中释放到水生环境中。
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引用次数: 0
Women in chemistry: Q&A with Dr Ritika Gautam-Singh 化学界的女性与 Ritika Gautam-Singh 博士的问答
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-25 DOI: 10.1038/s42004-024-01302-3
Dr Ritika Gautam-Singh is an Assistant Professor at the Indian Institute of Technology Kanpur, India, where she leads a research group focused on medicinal inorganic chemistry.
Ritika Gautam-Singh 博士是印度坎普尔印度理工学院的助理教授,她领导的研究小组主要研究药用无机化学。
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引用次数: 0
Women in chemistry: Q&A with Professor Hyunjoo Lee 化学界的女性与 Hyunjoo Lee 教授的问答
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-25 DOI: 10.1038/s42004-024-01291-3
Prof. Hyunjoo Lee is a Full Professor in the Department of Chemical and Biomolecular Engineering at the Korea Advanced Institute of Science & Technology (KAIST), Korea, and a KAIST Endowed Chair Professor. She also serves as the Director of the Heterogeneous Atomic Catalysts Research Center.
Hyunjoo Lee 教授是韩国科学技术院 (KAIST) 化学与生物分子工程系的全职教授和 KAIST 捐赠讲座教授。她还担任异相原子催化剂研究中心主任。
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引用次数: 0
Women in chemistry: Q&A with Dr. Stefanie Flohr 化学界的女性与 Stefanie Flohr 博士的问答
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-25 DOI: 10.1038/s42004-024-01290-4
Dr. Stefanie Flohr serves as an Associate Director at Novartis Biomedical Research in Basel, Switzerland.
Stefanie Flohr 博士是瑞士巴塞尔诺华生物医学研究公司的副主任。
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引用次数: 0
Women in chemistry: Q&A with Dr Janelle Sauvageau 化学界的女性与 Janelle Sauvageau 博士的问答
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-25 DOI: 10.1038/s42004-024-01277-1
Dr Janelle Sauvageau is a carbohydrate chemist within the Human Health Therapeutics Research Centre at the National Research Council of Canada (NRC).
Janelle Sauvageau 博士是加拿大国家研究理事会人类健康治疗研究中心的碳水化合物化学家。
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引用次数: 0
Women in chemistry: Q&A with Professor Shixuan Du 化学界的女性杜诗璇教授问答
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-19 DOI: 10.1038/s42004-024-01292-2
Shixuan Du is a Professor at the Institute of Physics, Chinese Academy of Sciences, in China. Shixuan’s research focuses on the interface properties and assembly mechanism of molecules on substrates, and the design of novel low-dimensional materials by using first-principle computational methods based on density functional theory as the main research tools.
杜世宣是中国科学院物理研究所教授。杜世宣的研究重点是分子在基底上的界面性质和组装机理,并以基于密度泛函理论的第一性原理计算方法为主要研究工具,设计新型低维材料。
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引用次数: 0
A new electrolyte for molten carbonate decarbonization 用于熔融碳酸盐脱碳的新型电解质
IF 5.9 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-18 DOI: 10.1038/s42004-024-01306-z
Gad Licht, Kyle Hofstetter, Xirui Wang, Stuart Licht
The molten Li2CO3 transformation of CO2 to oxygen and graphene nanocarbons (GNCs), such as carbon nanotubes, is a large scale process of CO2 removal to mitigate climate change. Sustainability benefits include the stability and storage of the products, and the GNC product value is an incentive for carbon removal. However, high Li2CO3 cost and its competitive use as the primary raw material for EV batteries are obstacles. Common alternative alkali or alkali earth carbonates are ineffective substitutes due to impure GNC products or high energy limitations. A new decarbonization chemistry utilizing a majority of SrCO3 is investigated. SrCO3 is much more abundant, and an order of magnitude less expensive, than Li2CO3. The equivalent affinities of SrCO3 and Li2CO3 for absorbing and releasing CO2 are demonstrated to be comparable, and are unlike all the other alkali and alkali earth carbonates. The temperature domain in which the CO2 transformation to GNCs can be effective is <800 °C. Although the solidus temperature of SrCO3 is 1494 °C, it is remarkably soluble in Li2CO3 at temperatures less than 800 °C, and the electrolysis energy is low. High purity CNTs are synthesized from CO2 respectively in SrCO3 based electrolytes containing 30% or less Li2CO3. The transformation of CO2 to oxygen and graphene nanocarbons using lithium carbonate as an electrolyte is a promising, large-scale process for CO2 removal and valorization, but lithium carbonate is already in high demand as an important battery material. Here, the authors report the use of strontium carbonate as an alternative electrolyte in the electrochemical reduction of CO2 to carbon nanotubes.
将二氧化碳转化为氧气和石墨烯纳米碳(GNC)(如碳纳米管)的熔融 Li2CO3 是一种大规模去除二氧化碳以减缓气候变化的工艺。可持续发展的好处包括产品的稳定性和储存,而 GNC 产品的价值则是碳清除的激励因素。然而,高昂的 Li2CO3 成本及其作为电动汽车电池主要原材料的竞争性用途是障碍。由于 GNC 产品不纯或高能量限制,普通的碱或碱土碳酸盐替代品效果不佳。本文研究了一种利用大部分 SrCO3 的新型脱碳化学。SrCO3 的含量比 Li2CO3 高得多,价格也低一个数量级。实验证明,SrCO3 和 Li2CO3 吸收和释放二氧化碳的亲和力相当,与所有其他碱和碱土碳酸盐不同。二氧化碳转化为 GNCs 的有效温度域为 800 °C。虽然 SrCO3 的固相温度为 1494 ℃,但它在低于 800 ℃ 的温度下可明显溶于 Li2CO3,且电解能量较低。在含 30% 或更少的 Li2CO3 的 SrCO3 基电解质中,可分别从 CO2 合成高纯度的 CNT。利用碳酸锂作为电解质将二氧化碳转化为氧气和石墨烯纳米碳,是一种很有前景的大规模二氧化碳脱除和价值化工艺,但碳酸锂作为一种重要的电池材料,需求量已经很大。在此,作者报告了在电化学还原二氧化碳到碳纳米管的过程中使用碳酸锶作为替代电解质的情况。
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引用次数: 0
期刊
Communications Chemistry
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