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Approximating lattice similarity. 近似网格相似性
IF 1.9 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2023-09-01 Epub Date: 2023-07-24 DOI: 10.1107/S2053273323003200
Lawrence C Andrews, Herbert J Bernstein, Nicholas K Sauter

A method is proposed for choosing unit cells for a group of crystals so that they all appear as nearly similar as possible to a selected cell. Related unit cells with varying cell parameters or indexed with different lattice centering can be accommodated.

本文提出了一种为一组晶体选择单元晶胞的方法,使它们看起来都尽可能地与所选晶胞相似。可以容纳具有不同晶胞参数或以不同晶格中心划分的相关晶胞。
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引用次数: 0
Perfect precise colorings of plane semiregular tilings. 完美精确的平面半规则瓷砖着色。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2023-09-01 DOI: 10.1107/S2053273323006630
Manuel Joseph C Loquias, Rovin B Santos

A coloring of a planar semiregular tiling {cal T} is an assignment of a unique color to each tile of {cal T}. If G is the symmetry group of {cal T}, the coloring is said to be perfect if every element of G induces a permutation on the finite set of colors. If {cal T} is k-valent, then a coloring of {cal T} with k colors is said to be precise if no two tiles of {cal T} sharing the same vertex have the same color. In this work, perfect precise colorings are obtained for some families of k-valent semiregular tilings in the plane, where k ≤ 6.

平面半正则平铺{ T}的上色是对{ T}的每个平铺{ T}的一个唯一的颜色赋值。如果G是{cal T}的对称群,则如果G的每个元素在颜色的有限集合上引起一个排列,则称该着色是完全的。如果{cal T}是k价的,那么如果{cal T}的两个砖块共用同一个顶点,没有相同的颜色,那么用k种颜色对{cal T}着色就是精确的。本文在k≤6的平面上,得到了若干k价半正则铺层族的完美精确着色。
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引用次数: 0
Distances in the face-centered cubic crystalline structure applying operational research. 面心立方晶体结构中距离的应用运筹学研究。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2023-09-01 DOI: 10.1107/S2053273323004837
Gergely Stomfai, Gergely Kovács, Benedek Nagy, Neşet Deniz Turgay, Béla Vizvári

The f.c.c. (face-centered cubic) grid is the structure of many crystals and minerals. It consists of four cubic lattices. It is supposed that there are two types of steps between two grid points. It is possible to step to one of the nearest neighbors of the same cubic lattice (type 1) or to step to one of the nearest neighbors of another cubic lattice (type 2). Steps belonging to the same type have the same length (weight). However, the two types have different lengths and thus may have different weights. This paper discusses the minimal path between any two points of the f.c.c. grid. The minimal paths are explicitly given, i.e. to obtain a minimal path one is required to perform only O(1) computations. The mathematical problem can be the model of different spreading phenomena in crystals having the f.c.c. structure.

面心立方网格是许多晶体和矿物的结构。它由四个立方晶格组成。假设两个网格点之间有两种步长。可以步进到同一立方体晶格的最近邻居之一(类型1)或步进到另一个立方体晶格的最近邻居之一(类型2)。属于同一类型的步具有相同的长度(权重)。然而,这两种类型具有不同的长度,因此可能具有不同的权重。本文讨论了fcc网格任意两点之间的最小路径。最小路径是显式给出的,即要获得最小路径,只需进行O(1)次计算。数学问题可以是具有fcc结构的晶体中不同扩散现象的模型。
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引用次数: 0
Patch frequencies in rhombic Penrose tilings. 菱形彭罗斯平铺中的贴片频率。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2023-09-01 DOI: 10.1107/S2053273323004990
Jan Mazáč

This exposition presents an efficient algorithm for an exact calculation of patch frequencies for rhombic Penrose tilings. A construction of Penrose tilings via dualization is recalled and, by extending the known method for obtaining vertex configurations, the desired algorithm is obtained. It is then used to determine the frequencies of several particularly large patches which appear in the literature. An analogous approach works for a particular class of tilings and this is also explained in detail for the Ammann-Beenker tiling.

本文提出了一种有效的算法,用于精确计算菱形彭罗斯平铺的贴片频率。回顾了利用二值化构造彭罗斯平铺的方法,并通过扩展已知的获取顶点构型的方法,得到了所需的算法。然后用它来确定文献中出现的几个特别大的斑块的频率。类似的方法适用于一类特殊的瓷砖,这也详细解释了Ammann-Beenker瓷砖。
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引用次数: 1
Background optimization of powder electron diffraction for implementation of the e-PDF technique and study of the local structure of iron oxide nanocrystals. 粉末电子衍射背景优化,实现e-PDF技术,研究氧化铁纳米晶的局部结构。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2023-09-01 DOI: 10.1107/S2053273323005107
Naga Vishnu Vardhan Mogili, Nathália Carolina Verissimo, A M Milinda Abeykoon, Emil S Bozin, Jefferson Bettini, Edson Roberto Leite, João Batista Souza Junior

The local structural characterization of iron oxide nanoparticles is explored using a total scattering analysis method known as pair distribution function (PDF) (also known as reduced density function) analysis. The PDF profiles are derived from background-corrected powder electron diffraction patterns (the e-PDF technique). Due to the strong Coulombic interaction between the electron beam and the sample, electron diffraction generally leads to multiple scattering, causing redistribution of intensities towards higher scattering angles and an increased background in the diffraction profile. In addition to this, the electron-specimen interaction gives rise to an undesirable inelastic scattering signal that contributes primarily to the background. The present work demonstrates the efficacy of a pre-treatment of the underlying complex background function, which is a combination of both incoherent multiple and inelastic scatterings that cannot be identical for different electron beam energies. Therefore, two different background subtraction approaches are proposed for the electron diffraction patterns acquired at 80 kV and 300 kV beam energies. From the least-square refinement (small-box modelling), both approaches are found to be very promising, leading to a successful implementation of the e-PDF technique to study the local structure of the considered nanomaterial.

利用一种称为对分布函数(PDF)(也称为约密度函数)分析的全散射分析方法,探讨了氧化铁纳米颗粒的局部结构特征。PDF轮廓是由背景校正的粉末电子衍射图(e-PDF技术)导出的。由于电子束与样品之间存在强烈的库仑相互作用,电子衍射通常会导致多次散射,导致强度向更高的散射角重新分布,并增加衍射剖面中的背景。除此之外,电子-试样的相互作用产生了一个不希望的非弹性散射信号,主要有助于背景。目前的工作证明了对潜在的复杂背景函数进行预处理的有效性,该背景函数是对不同电子束能量不可能相同的非相干多重和非弹性散射的组合。因此,本文针对80kv和300kv束流能量下的电子衍射图,提出了两种不同的背景减法。从最小二乘细化(小盒建模)来看,这两种方法都非常有前途,从而成功地实现了e-PDF技术来研究所考虑的纳米材料的局部结构。
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引用次数: 0
Combinatorial aspects of the Löwenstein avoidance rule. Part III: the relational system of configurations. Löwenstein回避规则的组合方面。第三部分:配置关系体系。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2023-09-01 DOI: 10.1107/S2053273323006174
Montauban Moreira de Oliveira, Jean Guillaume Eon

This paper introduces a new method of determining the independence ratio of periodic nets, based on the observation that, in any maximum independent set of the whole net, be it periodic or not, the vertices of every unit cell should constitute an independent set, called here a configuration. For 1-periodic graphs, a configuration digraph represents possible sequences of configurations of the unit cell along the periodic line. It is shown that maximum independent sets of the periodic graph are based on directed cycles with the largest ratio. In the case of 2-periodic nets, it is necessary to draw a different configuration digraph for each crystallographic direction defining a linkage between neighbouring cells, a concept known as a binary relational system. The two possible systems are analysed in this paper: overrightarrow{bf{sql}} is associated to nets displaying linkages between unit cells along the directions 10 and 01, and overrightarrow{bf{hxl}} is associated to nets also displaying linkages between cells along the direction 11. For both kinds of nets, a maximum independent set is obtained as a homomorphic image from overrightarrow{bf{sql}} or overrightarrow{bf{hxl}} to the respective configuration system. The method is illustrated with some of the 2-periodic nets listed on the Reticular Chemistry Structure Resource site; it is shown that it provides a rigorous solution to the case of the net sdh that was not satisfactorily solved in Part II [Moreira de Oliveira, de Abreu Mendes & Eon (2022). Acta Cryst. A78, 115-127]. The method is extended to relational systems based on non-translational symmetry operations. The successive steps are then summarized and a simple application to the 3-periodic net qtz is discussed; analysis of zeolites and aluminosilicates may proceed along the same lines. It is shown that the new method enables the analysis of disordered distributions in periodic nets.

本文提出了一种确定周期网独立比的新方法,该方法基于这样的观察,即在整个网的任意最大独立集中,无论是否为周期网,每个单元格的顶点都应构成一个独立集,这里称之为构形。对于1周期图,构型有向图表示沿周期线的单元格可能的构型序列。证明了周期图的最大独立集是基于具有最大比值的有向环。在2周期网络的情况下,有必要为每个晶体学方向绘制不同的构型有向图,以定义相邻细胞之间的连接,这是一个称为二元关系系统的概念。本文对这两种可能的系统进行了分析:overrightarrow{bf{sql}}与显示单元格之间沿10和01方向连接的网络相关联,overrightarrow{bf{hxl}}与显示单元格之间沿11方向连接的网络相关联。对于这两种网络,得到一个最大独立集,作为从overrightarrow{bf{sql}}或overrightarrow{bf{hxl}}到各自组态系统的同态映像。以网络化学结构资源网站上列出的一些2周期网为例说明了该方法;它表明,它提供了一个严格的解决方案,在第二部分中没有令人满意地解决净sdh的情况[Moreira de Oliveira, de Abreu Mendes & Eon(2022)]。Acta结晶。A78, 115 - 127]。将该方法推广到基于非平移对称操作的关系系统。然后总结了连续的步骤,并讨论了在三周期净qtz中的简单应用;沸石和硅铝酸盐的分析可以沿着同样的路线进行。结果表明,该方法能够对周期网络中的无序分布进行分析。
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引用次数: 0
Optimal estimated standard uncertainties of reflection intensities for kinematical refinement from 3D electron diffraction data. 三维电子衍射数据运动学精化中反射强度的最优估计标准不确定度。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2023-09-01 DOI: 10.1107/S2053273323005053
Malak Khouchen, Paul Benjamin Klar, Hrushikesh Chintakindi, Ashwin Suresh, Lukas Palatinus

Estimating the error in the merged reflection intensities requires a full understanding of all the possible sources of error arising from the measurements. Most diffraction-spot integration methods focus mainly on errors arising from counting statistics for the estimation of uncertainties associated with the reflection intensities. This treatment may be incomplete and partly inadequate. In an attempt to fully understand and identify all the contributions to these errors, three methods are examined for the correction of estimated errors of reflection intensities in electron diffraction data. For a direct comparison, the three methods are applied to a set of organic and inorganic test cases. It is demonstrated that applying the corrections of a specific model that include terms dependent on the original uncertainty and the largest intensity of the symmetry-related reflections improves the overall structure quality of the given data set and improves the final Rall factor. This error model is implemented in the data reduction software PETS2.

估计合并反射强度的误差需要充分了解测量产生的所有可能的误差来源。大多数衍射点积分方法主要集中在计数统计引起的误差上,用于估计与反射强度相关的不确定性。这种治疗可能是不完整的,部分是不充分的。为了充分理解和确定这些误差的所有贡献,我们研究了三种方法来校正电子衍射数据中反射强度的估计误差。为了进行直接比较,将这三种方法应用于一组有机和无机测试用例。结果表明,应用特定模型的校正,包括依赖于原始不确定性和对称相关反射的最大强度的项,可以改善给定数据集的整体结构质量,并提高最终的Rall因子。该误差模型在数据约简软件PETS2中实现。
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引用次数: 0
Algorithms for magnetic symmetry operation search and identification of magnetic space group from magnetic crystal structure. 基于磁晶体结构的磁对称运算搜索与磁空间群识别算法。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2023-09-01 DOI: 10.1107/S2053273323005016
Kohei Shinohara, Atsushi Togo, Isao Tanaka

A crystal symmetry search is crucial for computational crystallography and materials science. Although algorithms and implementations for the crystal symmetry search have been developed, their extension to magnetic space groups (MSGs) remains limited. In this paper, algorithms for determining magnetic symmetry operations of magnetic crystal structures, identifying magnetic space-group types of given MSGs, searching for transformations to a Belov-Neronova-Smirnova (BNS) setting, and symmetrizing the magnetic crystal structures using the MSGs are presented. The determination of magnetic symmetry operations is numerically stable and is implemented with minimal modifications from the existing crystal symmetry search. Magnetic space-group types and transformations to the BNS setting are identified by a two-step approach combining space-group-type identification and the use of affine normalizers. Point coordinates and magnetic moments of the magnetic crystal structures are symmetrized by projection operators for the MSGs. An implementation is distributed with a permissive free software license in spglib v2.0.2: https://github.com/spglib/spglib.

晶体对称搜索对于计算晶体学和材料科学是至关重要的。虽然晶体对称搜索的算法和实现已经开发出来,但它们在磁空间群(msg)上的扩展仍然有限。本文给出了确定磁晶体结构的磁对称操作、确定给定磁晶体的磁空间群类型、搜索到Belov-Neronova-Smirnova (BNS)设置的变换以及利用磁晶体结构实现磁晶体结构对称的算法。磁对称运算的确定在数值上是稳定的,并且对现有的晶体对称搜索进行了最小的修改。磁空间群类型和对BNS设置的变换通过结合空间群类型识别和使用仿射归一化的两步方法进行识别。用投影算子对磁晶体结构的点坐标和磁矩进行对称。实现是在spglib v2.0.2: https://github.com/spglib/spglib中与宽松的自由软件许可证一起发布的。
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引用次数: 0
Double-slit X-ray dynamical diffraction in curved crystals. 弯曲晶体中的双缝x射线动态衍射。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2023-07-01 DOI: 10.1107/S2053273323004345
Minas K Balyan

The theoretical investigation of double-slit X-ray dynamical diffraction in curved crystals shows that Young's interference fringes are formed. An expression for the period of the fringes has been established which is polarization sensitive. The position of the fringes in the cross section of the beam depends on the deviation from the Bragg exact orientation for a perfect crystal, on the curvature radius and on the thickness of the crystal. This type of diffraction can be used for determination of the curvature radius by measuring the shift of the fringes from the centre of the beam.

对弯曲晶体中双缝x射线动态衍射的理论研究表明,存在杨氏干涉条纹。建立了偏振敏感的条纹周期表达式。条纹在光束横截面上的位置取决于完美晶体与布拉格精确方向的偏差、曲率半径和晶体的厚度。这种类型的衍射可以通过测量条纹从光束中心的位移来确定曲率半径。
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引用次数: 0
Crystallography of homophase twisted bilayers: coincidence, union lattices and space groups. 同相扭曲双分子层的晶体学:巧合、联合晶格和空间群。
IF 1.9 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2023-07-01 Epub Date: 2023-06-02 DOI: 10.1107/S2053273323003662
Denis Gratias, Marianne Quiquandon

This paper presents the basic tools used to describe the global symmetry of so-called bilayer structures obtained when two differently oriented crystalline monoatomic layers of the same structure are superimposed and displaced with respect to each other. The 2D nature of the layers leads to the use of complex numbers that allows for simple explicit analytical expressions of the symmetry properties involved in standard bicrystallography [Gratias & Portier (1982). J. Phys. Colloq. 43, C6-15-C6-24; Pond & Vlachavas (1983). Proc. R. Soc. Lond. Ser. A, 386, 95-143]. The focus here is on the twist rotations such that the superimposition of the two layers generates a coincidence lattice. The set of such coincidence rotations plotted as a function of the lengths of their coincidence lattice unit-cell nodes exhibits remarkable arithmetic properties. The second part of the paper is devoted to determination of the space groups of the bilayers as a function of the rigid-body translation associated with the coincidence rotation. These general results are exemplified with a detailed study of graphene bilayers, showing that the possible symmetries of graphene bilayers with a coincidence lattice, whatever the rotation and the rigid-body translation, are distributed in only six distinct types of space groups. The appendix discusses some generalized cases of heterophase bilayers with coincidence lattices due to specific lattice constant ratios, and mechanical deformation by elongation and shear of a layer on top of an undeformed one.

本文介绍了用于描述所谓双层结构的全局对称性的基本工具,当两个不同取向的相同结构的单原子晶体层叠加并相互移位时,就会产生双层结构。层的二维性质导致了复数的使用,从而可以简单明确地分析表达标准双晶学所涉及的对称特性[Gratias & Portier (1982)。J. Phys.43, C6-15-C6-24; Pond & Vlachavas (1983).Proc.R. Soc. Lond.A, 386, 95-143].这里的重点是扭曲旋转,即两层叠加产生重合晶格。这种重合旋转的集合作为其重合晶格单元结点长度的函数而绘制,表现出显著的算术特性。论文的第二部分致力于确定与重合旋转相关的刚体平移函数的双层空间群。这些一般结果通过对石墨烯双层膜的详细研究得到了例证,表明具有重合晶格的石墨烯双层膜的可能对称性,无论旋转和刚体平移如何,都只分布在六种不同类型的空间群中。附录讨论了具有重合晶格的异相双层层的一些广义情况,这些情况是由于特定的晶格常数比,以及在未变形层上对一层进行拉伸和剪切的机械变形造成的。
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引用次数: 0
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Acta Crystallographica Section A: Foundations and Advances
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