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Plasmalogens Activate AKT/mTOR Signaling to Attenuate Reactive Oxygen Species Production in Spinal Cord Injury. 缩醛磷脂激活AKT/mTOR信号减少脊髓损伤中活性氧的产生
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2025-01-20 DOI: 10.2174/0115665232330349241225074627
Mengdan Cheng, Yan Gao, Yiqing Wu, Liangliang Zhang, Bai Xu, Xiaojie Lu

Background: Plasmalogens, the primary phospholipids in the brain, possess intrinsic antioxidant properties and are crucial components of the myelin sheath surrounding neuronal axons. While their neuroprotective effects have been demonstrated in Alzheimer's disease, their potential benefits in spinal cord injury remain unexplored. This study investigates the reparative effects of plasmalogens on spinal cord injury and the underlying mechanisms.

Methods: In vitro, we developed dorsal root ganglion (DRG) and RAW 264.7 cell models under high-reactive oxygen species (ROS) conditions to assess ROS levels, neuronal damage, and inflammatory microenvironment changes before and after plasmalogen application. In vivo, we used a complete mouse spinal cord transection model to evaluate changes in ROS levels, neuronal demyelination, and apoptosis following plasmalogen treatment. Additionally, we assessed sensory and motor function recovery and investigated the regulatory effects of plasmalogens on the AKT/mTOR signaling pathway.

Results: In high-ROS cell models, plasmalogens protected DRG neurons (TUJ-1) from axonal damage and modulated the proinflammatory/anti-inflammatory balance in RAW 264.7 cells. In vivo, plasmalogens significantly reduced ROS levels, improved the immune microenvironment, decreased the proinflammatory (iNOS)/anti-inflammatory (ARG-1) ratio, lowered neuronal (TUJ-1) apoptosis (Caspase-3, BAX), and reduced axonal degeneration while promoting myelin (MBP) regeneration, indicating a neuroprotective effect. These findings are linked to the activation of the AKT/mTOR signaling pathway.

Conclusion: Plasmalogens reduce ROS levels and regulate inflammation-induced damage, contributing to neuroprotection. This study reveals that plasmalogens promote remyelination, reduce axonal degeneration and neuronal apoptosis, and-used here for the first time in spinal cord injury repair- may protect neurons by reducing ROS levels and activating the AKT/mTOR signaling pathway.

背景:缩醛磷脂是大脑中的主要磷脂,具有内在的抗氧化特性,是神经轴突周围髓鞘的重要组成部分。虽然它们对阿尔茨海默病的神经保护作用已被证实,但它们对脊髓损伤的潜在益处仍未被探索。本研究探讨磷脂原对脊髓损伤的修复作用及其机制。方法:在体外建立高活性氧(ROS)条件下的背根神经节(DRG)和RAW 264.7细胞模型,评估应用plasmalogen前后ROS水平、神经元损伤和炎症微环境的变化。在体内,我们使用完整的小鼠脊髓横断模型来评估等离子原治疗后ROS水平、神经元脱髓鞘和细胞凋亡的变化。此外,我们评估了感觉和运动功能恢复,并研究了磷脂原对AKT/mTOR信号通路的调节作用。结果:在高ros细胞模型中,浆磷脂原可保护DRG神经元(TUJ-1)免受轴突损伤,并调节RAW 264.7细胞的促炎/抗炎平衡。在体内,缩醛磷脂显著降低ROS水平,改善免疫微环境,降低促炎(iNOS)/抗炎(ARG-1)比,降低神经元(TUJ-1)凋亡(Caspase-3, BAX),减少轴突变性,促进髓鞘(MBP)再生,表明其具有神经保护作用。这些发现与AKT/mTOR信号通路的激活有关。结论:缩醛磷脂原可降低ROS水平,调节炎症损伤,具有一定的神经保护作用。本研究揭示,磷脂原可能通过降低ROS水平和激活AKT/mTOR信号通路来保护神经元,促进髓鞘再生,减少轴突变性和神经元凋亡,并首次用于脊髓损伤修复。
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引用次数: 0
siRNA Knocking Down in HepG2 Cells Identifies PFKFB4 and HNF4α as Key Genes Important for Cancer Cell Survival. HepG2细胞siRNA敲低鉴定PFKFB4和HNF4α是影响癌细胞存活的关键基因
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2025-01-17 DOI: 10.2174/0115665232337735250101121115
Amer Imraish, Walhan Alshaer, Tuqa Abu-Thiab, Fatima Enaya, Hamzeh J Al-Ameer, Afnan Al-Hunaiti, Mohammad Abumurad, Malek Zihlif

Introduction: Liposomes are versatile delivery systems for encapsulating small interfering RNAs (siRNAs) because they enhance cellular uptake and gene silencing. This study compares the new liposome formula to commercial lipofectamine in delivering siRNAs targeting hepatic carcinoma genes, focusing on HNF4-α and PFKFB4.

Methods: Flow cytometry and confocal microscopy revealed efficient internalization of PE-Rhod- B labeled lipoplexes in HepG2 cells, while cytotoxicity assays demonstrated significant reductions in cell viability, particularly with siHNF4-α and siPFKFB4.

Results: The newly formulated liposomes showed superior efficacy, achieving nearly 93% cytotoxicity at 100 nM, compared to just 50% with lipofectamine at the same concentration. Furthermore, real-time PCR confirmed that the liposome-encapsulated siHNF4-α reduced HNF4-α mRNA expression by tenfold at 100 nM, compared to a twofold reduction with lipofectamine at 200 nM. Similarly, siPFKFB4 delivered via liposomes showed a dose-dependent 35-fold reduction in PFKFB4 mRNA expression at 100 nM, outperforming the maximum reduction achieved by lipofectamine. The IC50 values for all siRNA treatment groups were significantly lower when using the liposome formula, reflecting improved delivery efficiency.

Conclusion: These results demonstrate the potential of liposome formulations for therapeutic siRNA delivery. The encapsulation enhances cellular uptake and gene silencing efficiency, making the liposome formula a promising candidate for targeted gene therapy in hepatic carcinoma. Further research should explore it's in vivo biodistribution and potential combination therapies.

脂质体是封装小干扰rna (sirna)的通用递送系统,因为它们增强细胞摄取和基因沉默。本研究比较了新脂质体配方与商用脂质体在递送靶向肝癌基因的sirna方面的差异,重点是HNF4-α和PFKFB4。方法:流式细胞术和共聚焦显微镜显示PE-Rhod- B标记的脂质体在HepG2细胞中有效内化,而细胞毒性实验显示细胞活力显著降低,特别是siHNF4-α和siPFKFB4。结果:新配制的脂质体表现出优越的功效,在100 nM下达到近93%的细胞毒性,而相同浓度的脂质体仅为50%。此外,实时PCR证实脂质体包裹的siHNF4-α在100 nM时使HNF4-α mRNA的表达减少了10倍,而脂质体在200 nM时使HNF4-α mRNA的表达减少了2倍。同样,通过脂质体递送的siPFKFB4在100 nM时显示PFKFB4 mRNA表达的剂量依赖性降低了35倍,优于脂质体所达到的最大降幅。使用脂质体配方时,所有siRNA处理组的IC50值均显著降低,反映了递送效率的提高。结论:这些结果证明了脂质体制剂治疗siRNA递送的潜力。脂质体的包封增强了细胞摄取和基因沉默效率,使其成为肝癌靶向基因治疗的有希望的候选药物。进一步的研究应探讨其在体内的生物分布和潜在的联合治疗。
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引用次数: 0
Development of Lentiviral Packaging Cells and Scale Up of Production to Meet the Growing Demand in Cell and Gene Therapy. 慢病毒包装细胞的发展和生产规模,以满足细胞和基因治疗日益增长的需求。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2025-01-13 DOI: 10.2174/0115665232332412241118063211
Yasemin van Heuvel, Jörn Stitz

Gamma-Retroviral (RVVs) and lentiviral vectors (LVVs) represent indispensable tools in somatic gene therapy, mediating the efficient, stable transfer of therapeutic genes into a variety of human target cells. LVVs, in contrast to RVVs, are capable of stably genetically modifying non-proliferating target cells, making them the superior instrument in cell and gene therapy. To date, the LVV manufacturing process employs human embryonic kidney cells (HEK293) and derivatives thereof transiently transfected with multiple plasmids encoding the required viral vector components. Alternatively, stable packaging cell lines were developed and engineered to express all vector components in trans. Currently, these cells are mostly cultured in cell stacks, where they grow adherently in 2D layers, limiting the scale-up of vector production. The production of viral vectors using stable suspension cell lines enables larger-scale production and higher yields under controlled conditions. Here, we review the improvements made to enhance vector safety and production yield. Current advancements in the establishment of stable packaging cell lines enabling inducible and constitutive LVV production are summarized and discussed. Manufacturing processes for lentiviral vectors using bioreactors with perfusion systems are required to meet the growing demand in cell and gene therapy and to reduce production and therapy costs.

γ -逆转录病毒(RVVs)和慢病毒载体(LVVs)是体细胞基因治疗中不可或缺的工具,它们介导治疗基因高效、稳定地转移到各种人类靶细胞中。与RVVs相比,LVVs能够稳定地对非增殖靶细胞进行基因修饰,使其成为细胞和基因治疗的优越工具。迄今为止,LVV制造过程使用人胚胎肾细胞(HEK293)及其衍生物,用编码所需病毒载体成分的多个质粒瞬时转染。或者,稳定的包装细胞系被开发和改造,以表达所有的载体成分在trans。目前,这些细胞大多是在细胞堆中培养的,它们在二维层中粘附生长,限制了载体生产的规模。利用稳定的悬浮细胞系生产病毒载体,可以在控制条件下大规模生产和提高产量。在此,我们回顾了为提高病媒安全性和产量所做的改进。目前在建立稳定的包装细胞系,使诱导和本构LVV生产的进展进行了总结和讨论。为了满足细胞和基因治疗日益增长的需求,并降低生产和治疗成本,需要使用生物反应器和灌注系统来制造慢病毒载体。
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引用次数: 0
O-substituted Tertiary Amine-chitosans as Promising Nanocarriers for siRNA Delivery. o取代叔胺-壳聚糖作为siRNA递送的有前途的纳米载体。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2025-01-10 DOI: 10.2174/0115665232335957241122164034
André Miguel Martinez Júnior, Vera Aparecida de Oliveira, Marcio José Tiera

Introduction: The clinical translation of chitosan-based formulations for siRNA delivery has been partially limited by their poor stability/solubility at physiological conditions, although they have good biocompatibility and cost-effectiveness.

Method: In this study, the chitosan was O-substituted with diisopropylethylamine (DIPEA) groups, which improved its solubility at pH 7.4 by increasing the degree of ionization and enhanced the ability of chitosan to load siRNA at very low amine/phosphate (N/P) ratios. The O-DIPEAchitosan/ siRNA nanopolyplexes were self-assembled by complexation and presented positive Zeta potentials (ζ = +8 to +10 mV), spherical-like morphology, 200-300 nm size, low polydispersity index (PDI < 0.2), and were able to protect the siRNA from degradation by RNAse. Also, the resistance to albumin-induced disassembly and aggregation revealed both good structural and colloidal stabilities of the siRNA nanopolyplexes.

Result: The nanopolyplexes displayed low cytotoxicities in RAW 264.7 macrophages and were successfully uptaken by both macrophages and HeLa cells achieving internalization efficiency similar to Lipofectamine. A positive correlation was observed between the physicochemical properties of the siRNA nanocarrier and its transfection efficiency.

Conclusion: A knockdown of about 60-70% of tumor necrosis factor alpha (TNFα) was reached in lipopolysaccharide-stimulated macrophages treated with O-DIPEA-chitosan/siTNFα nanopolyplexes. Overall, the results confirmed that O-DIPEA chitosans are promising carriers for siRNA delivery.

尽管壳聚糖具有良好的生物相容性和成本效益,但其在生理条件下的稳定性/溶解度较差,部分限制了其用于siRNA递送的临床翻译。方法:用二异丙基乙胺(DIPEA)取代壳聚糖,提高其在pH 7.4下的溶解度,提高壳聚糖在极低胺/磷酸盐(N/P)比下负载siRNA的能力。O-DIPEAchitosan/ siRNA纳米复合物通过络合自组装,具有正Zeta电位(ζ = +8 ~ +10 mV),球形,200 ~ 300 nm尺寸,低多分散指数(PDI < 0.2),能够保护siRNA不被RNAse降解。此外,对白蛋白诱导的分解和聚集的抗性表明siRNA纳米复合物具有良好的结构和胶体稳定性。结果:纳米复合物在RAW 264.7巨噬细胞中表现出较低的细胞毒性,并被巨噬细胞和HeLa细胞成功摄取,其内化效率与Lipofectamine相似。siRNA纳米载体的理化性质与其转染效率呈正相关。结论:o - dipea -壳聚糖/siTNFα纳米复合物可使脂多糖刺激的巨噬细胞中肿瘤坏死因子α (TNFα)下调60-70%。总之,结果证实O-DIPEA壳聚糖是siRNA递送的有希望的载体。
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引用次数: 0
Implications of EBV-Encoded and EBV-Related miRNAs in Tumors. ebv编码和ebv相关mirna在肿瘤中的意义。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2025-01-08 DOI: 10.2174/0115665232327174241211075019
Prankur Awasthi, Arjun Singh Kohli, Manish Dwivedi, Saba Hasan

Over 90% of people are infected with the human g-herpesvirus known as the Epstein- Barr virus (EBV). Cancers, such as gastric carcinoma, non-Hodgkin's lymphoma, nasopharyngeal carcinoma, Hodgkin's lymphoma, and Burkitt lymphoma, are thought to be linked with EBV. It is noteworthy that the first virus discovered that encodes microRNAs (miRNAs) was EBV, and these miRNAs show expression at the different phases of EBV infection. There is growing evidence that EBV-encoded miRNAs influence the growth of EBV-associated tumors. These EBV miRNAs, i.e., BamHI-H rightward fragment 1-derived microRNAs (BHRF1miRNA) and BamHI-A rightward fragment-derived microRNAs (BART miRNAs), are crucial for the persistence of viral infection and the avoidance of host defenses. Currently, significant advancements have been made in analyzing the microRNAs that are found in the duration of EBV infection, in vitro studies identified molecular targets of miRNAs and in vivo studies enhanced our understanding regarding the pathophysiology of these molecules. An extensive look into the pro-carcinogenic impact of microRNAs associated with EBV will increase our understanding of the molecular mechanisms of EBV-associated tumors. In this paper, we have highlighted the functions of miRNAs in EBV infection as well as recent developments in miRNA-based therapeutic and diagnostic approaches that could be useful for EBV-related malignancies. Significantly, targeted therapies against EBV miRNAs are advancing rapidly, with emerging approaches such as miRNA sponges, anti-miRNA oligonucleotides, and CRISPR/Cas9 technologies. These innovations indicate the imminent onset of a new era in the treatment of EBV-associated tumors.

超过90%的人感染了人类g-疱疹病毒,即eb病毒(EBV)。胃癌、非霍奇金淋巴瘤、鼻咽癌、霍奇金淋巴瘤和伯基特淋巴瘤等癌症被认为与EBV有关。值得注意的是,第一个发现编码microrna (mirna)的病毒是EBV,这些mirna在EBV感染的不同阶段都有表达。越来越多的证据表明,ebv编码的mirna影响ebv相关肿瘤的生长。这些EBV mirna,即BamHI-H向右片段1衍生的microrna (BHRF1miRNA)和BamHI-A向右片段衍生的microrna (BART mirna),对于病毒感染的持续存在和避免宿主防御至关重要。目前,在分析EBV感染期间发现的microrna方面已经取得了重大进展,体外研究确定了mirna的分子靶点,体内研究增强了我们对这些分子病理生理学的理解。深入研究与EBV相关的microrna的致癌性影响将增加我们对EBV相关肿瘤的分子机制的理解。在本文中,我们强调了mirna在EBV感染中的功能,以及基于mirna的治疗和诊断方法的最新进展,这些方法可能对EBV相关的恶性肿瘤有用。值得注意的是,针对EBV miRNA的靶向治疗正在迅速发展,如miRNA海绵、抗miRNA寡核苷酸和CRISPR/Cas9技术等新兴方法。这些创新预示着ebv相关肿瘤治疗的新时代即将到来。
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引用次数: 0
Untangling the Genetic Threads of Alzheimer's: Insights into Risk Factors and Biomarkers. 解开阿尔茨海默氏症的遗传线索:洞察风险因素和生物标志物。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2025-01-07 DOI: 10.2174/0115665232338503241227111640
Atabak Naiyeri, Amin Moqadami, Mohammad Khalaj-Kondori

Dementia is a comprehensive term that refers to illnesses characterized by a decline in cognitive memory and other cognitive functions, affecting a person's overall ability to operate. The exact causes of dementia are unknown to this day. The heterogeneity of Alzheimer's indicates the contribution of genetic polymorphism to this disease. This disease is the most prevalent and damaging illness. Studies indicate that the global prevalence of Alzheimer's disease (AD) exceeds 26 million individuals. Investigation of variations in many genes indicates that these variations may be linked to the susceptibility to AD. Additional genetic factors could potentially influence AD. Analysis of several single-nucleotide polymorphisms in this context reveals a correlation between certain variants and AD. Regardless, Alzheimer's disease is always influenced by a particular APOE gene allele. The study's findings indicate that risk of Alzheimer's disease (AD) is linked to polymorphisms in the following genes: BDNF, presenilin-1 (PS-1), presenilin-2 (PS-2), LRP, APP, CTSD,5-6HT, TREM2, TNF-α, LPL, Clusterin (CLU), SORL1 (Sortilin-Related Receptor), PICALM, Complement Receptor 1 (CR1), and APOE genes.

痴呆症是一个综合性术语,指的是以认知记忆和其他认知功能下降为特征的疾病,影响了一个人的整体操作能力。痴呆的确切病因至今仍不清楚。阿尔茨海默病的异质性表明遗传多态性对这种疾病的贡献。这种疾病是最普遍和最具破坏性的疾病。研究表明,阿尔茨海默病(AD)的全球患病率超过2600万人。对许多基因变异的研究表明,这些变异可能与阿尔茨海默病的易感性有关。其他遗传因素也可能影响阿尔茨海默病。在这种情况下,对几个单核苷酸多态性的分析揭示了某些变异与AD之间的相关性。无论如何,阿尔茨海默病总是受到特定的APOE基因等位基因的影响。研究结果表明,阿尔茨海默病(AD)的风险与以下基因的多态性有关:BDNF、早老素-1 (PS-1)、早老素-2 (PS-2)、LRP、APP、CTSD、5-6HT、TREM2、TNF-α、LPL、Clusterin (CLU)、SORL1 (sortilin相关受体)、PICALM、补体受体1 (CR1)和APOE基因。
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引用次数: 0
CRISPR/Cas System: A Powerful Strategy to Improve Monogenic Human Diseases as Therapeutic Delivery; Current Applications and Challenges. CRISPR/Cas系统:改善人类单基因疾病治疗的有力策略当前的应用和挑战。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2025-01-07 DOI: 10.2174/0115665232345516241119070150
Fatemeh Saberi, Zeinab Yousefi-Najafabadi, Forough Shams, Zeinab Dehghan, Sepideh Ahmadi, Tayyebeh Pilehchi, Effat Noori, Zeinab Esmaeelzadeh, Maryam Bazgiri, Rezvan Mohammadi, Farzaneh Khani, Marzieh Sameni, Parisa Moradbeigi, Gholam Ali Kardar, Mohammad Salehi, Yong Teng, Vahid Jajarmi

The 5,000 to 8,000 monogenic diseases are inherited disorders leading to mutations in a single gene. These diseases usually appear in childhood and sometimes lead to morbidity or premature death. Although treatments for such diseases exist, gene therapy is considered an effective and targeted method and has been used in clinics for monogenic diseases since 1989. Monogenic diseases are good candidates for novel therapeutic technologies like gene editing approaches to repair gene mutations. Clustered regularly interspaced short palindromic repeats (CRISPR)-based systems, the pioneer and effective gene editing tool, are utilized for ex vivo and in vivo treatment of monogenic diseases. The current review provides an overview of recent therapeutic applications of CRISPR-based gene editing in monogenic diseases in in vivo and ex vivo models. Furthermore, this review consolidates strategies aimed at providing new treatment options with gene therapy, thereby serving as a valuable reference for advancing the treatment landscape for patients with monogenic disorders.

5000到8000种单基因疾病是由单个基因突变引起的遗传性疾病。这些疾病通常出现在儿童时期,有时会导致发病或过早死亡。虽然有治疗这类疾病的方法,但基因疗法被认为是一种有效和有针对性的方法,自1989年以来一直在诊所用于治疗单基因疾病。单基因疾病是新的治疗技术的良好候选者,比如修复基因突变的基因编辑方法。基于聚类规则间隔短回文重复序列(CRISPR)的系统是先驱和有效的基因编辑工具,用于单基因疾病的体外和体内治疗。本文综述了近年来基于crispr的基因编辑在单基因疾病体内和体外模型中的治疗应用。此外,本综述整合了旨在提供新的基因治疗选择的策略,从而为推进单基因疾病患者的治疗前景提供了有价值的参考。
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引用次数: 0
Synergizing CRISPR-Cas9 with Advanced Artificial Intelligence and Machine Learning for Precision Drug Delivery: Technological Nexus and Regulatory Insights.
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2025-01-06 DOI: 10.2174/0115665232342293241120033251
Amrita Arup Roy, Rahul Pokale, Anoushka Mukharya, Ajinkya N Nikam, Kamal Dua, Bola Sadashiva Satish Rao, Raviraja Neelavar Seetharam, Srinivas Mutalik

The evolution of genetic exploration tools, from laborious methods like radiationinduced mutations to the transformative CRISPR-Cas9 system, has fundamentally reshaped genetic research and gene editing capabilities. This journey, initiated by foundational techniques such as ZFNs and TALENs and culminating in the groundbreaking work of Doudna and Charpentier in 2012, has ushered in an era of precise DNA alteration and profound insights into gene functions. The CRISPR/Cas9 system uses the Cas9 enzyme and guides RNA (gRNA) to precisely target and cleave DNA, with subsequent repair via error-prone NHEJ or precise HDR, enabling versatile gene editing. Complementary computational tools like E-CRISP and Azimuth 2.0, alongside advanced deep learning models like DeepCRISPR, have significantly contributed to refining CRISPR experiments, optimizing gRNA efficiency, and predicting outcomes with greater precision. In clinical applications, CRISPR-Cas9 shows great promise for treating complex genetic disorders like sickle cell disease and β-thalassemia, but faces challenges such as off-target effects, immune responses to viral vectors, and ethical issues in germline editing. Overcoming these challenges requires meticulous experimentation and robust regulatory frameworks to ensure responsible and beneficial utilization of the CRISPR-Cas9 technology across diverse fields, including cancer treatment, genetic disease therapies, agriculture, and synthetic biology, while continually addressing ethical, safety, and legal considerations for its advancement and widespread adoption.

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引用次数: 0
The Role of Immunotherapy in Lung Cancer Treatment: Current Strategies, Future Directions, and Insights into Metastasis and Immune Microenvironment. 免疫治疗在肺癌治疗中的作用:当前策略,未来方向,以及对转移和免疫微环境的见解。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2025-01-06 DOI: 10.2174/0115665232340926241105064739
Chen Lu Li, Xin Yuan Ma, Ping Yi

Lung cancer is a leading cause of mortality worldwide. Immunotherapy has emerged as a potentially effective strategy, as traditional medicines have shown minimal success. This review investigates the current state of immunotherapy for lung cancer treatment, focusing on its mechanisms, clinical applications, strategies, and future directions. This study focuses on the different characteristics of non-small and small-cell lung cancer to emphasize the need for targeted treatment strategies. In non-small cell lung cancer, immune checkpoint inhibitors that target PD-1, PDL1, and CTLA-4 have shown a strong therapeutic benefit and increased survival rates. The complex interactions among tumor cells, immune cells, and the tumor microenvironment significantly impact the outcome of immunotherapy. The determination of predicting biomarkers and conquering resistance requires an understanding of the tumor microenvironment. This study addresses a range of immunotherapeutic strategies, such as immune modulators, monoclonal antibodies, and cancer vaccines. The combination approaches are being explored to enhance treatment effectiveness and address resistance mechanisms that integrate immunotherapy with other modalities. Despite advancements, challenges still exist. The identification of reliable biomarkers, regulating immune- related adverse effects, and the overcoming of limitations in treating metastatic disease require more investigation. Future research directions should include exploring the immune microenvironment, developing personalized treatment strategies based on tumor profiles, and integrating new technologies for patient screening. Immunotherapy holds immense potential to modify lung cancer treatment and enhance clinical results.

肺癌是世界范围内导致死亡的主要原因。由于传统药物收效甚微,免疫疗法已成为一种潜在的有效策略。本文就免疫治疗肺癌的机制、临床应用、策略及未来发展方向等方面进行综述。本研究针对非小细胞肺癌和小细胞肺癌的不同特点,强调有针对性的治疗策略的必要性。在非小细胞肺癌中,靶向PD-1、PDL1和CTLA-4的免疫检查点抑制剂显示出很强的治疗效果,并提高了生存率。肿瘤细胞、免疫细胞和肿瘤微环境之间复杂的相互作用显著影响免疫治疗的结果。预测生物标志物和克服耐药性的决定需要了解肿瘤微环境。本研究涉及一系列免疫治疗策略,如免疫调节剂、单克隆抗体和癌症疫苗。目前正在探索联合治疗方法,以提高治疗效果并解决将免疫治疗与其他方式结合起来的耐药机制。尽管取得了进步,但挑战依然存在。确定可靠的生物标志物,调节免疫相关的不良反应,以及克服治疗转移性疾病的局限性需要更多的研究。未来的研究方向应包括探索免疫微环境,根据肿瘤特征制定个性化治疗策略,以及整合新技术进行患者筛查。免疫疗法在改善肺癌治疗和提高临床效果方面具有巨大的潜力。
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引用次数: 0
Identification of the Metabolic Characteristic of Organ Fibrosis Using Microbial Analysis on RNA-seq Data. 利用RNA-seq数据的微生物分析鉴定器官纤维化的代谢特征。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2025-01-03 DOI: 10.2174/0115665232257596231011110813
Zitong Wang, Ping Wang, Guoyou He, Liang Cheng, Tianyu Li, Yan Wang, Hong Li

Background: Fibrosis refers to abnormal deposition of extracellular matrix, which leads to organ dysfunction. Metabolic alterations, especially enhanced glycolysis and suppressed fatty acid oxidation, are recognized as an essential pathogenic process of fibrosis. Recently, several reports indicate that the changes in microbiota composition are associated with metabolic disorders, suggesting microbes may contribute to organ fibrosis by regulating metabolic processes.

Method: In this study, microbial reannotation was carried out on the RNA-seq data of fibrotic organs. Then, the microbial composition differences among healthy and fibrotic organ samples were determined by alpha and beta diversity analysis. Common and specific microbial markers of fibrosis were also identified by LEfSe. After that, the correlation analysis of the characteristic microbe-- gene-functional pathway was conducted to confirm the effects of microbes on host metabolism.

Result: The results showed that the microbial composition significantly differed between healthy and diseased organs. Besides, the common characteristic microbes interacted closely with each other and contributed to fibrosis through symbiosis or inhibition. The largest proportion in fibrosis organs was Proteobacteria, which was the main source of pathogenic microbes.

Conclusion: Further study found that the metabolic alteration driven by common and special characteristic microbes in fibrotic organs focused on the processes related to glycolysis and fatty acid metabolism.

背景:纤维化是指细胞外基质的异常沉积,导致器官功能障碍。代谢改变,特别是糖酵解增强和脂肪酸氧化抑制,被认为是纤维化的必要致病过程。最近,一些报道表明,微生物群组成的变化与代谢紊乱有关,表明微生物可能通过调节代谢过程促进器官纤维化。方法:本研究对纤维化器官的RNA-seq数据进行微生物重注释。然后,通过α和β多样性分析确定健康和纤维化器官样本之间的微生物组成差异。通过LEfSe还鉴定了纤维化的常见和特异性微生物标志物。之后,对特征微生物-基因-功能通路进行相关性分析,确认微生物对宿主代谢的影响。结果:健康脏器与病变脏器的微生物组成差异显著。此外,共同的特征微生物之间相互作用密切,通过共生或抑制作用促进纤维化。在纤维化器官中所占比例最大的是变形菌,它是主要的致病微生物来源。结论:进一步研究发现,纤维化器官中常见和特殊特征微生物驱动的代谢改变主要集中在糖酵解和脂肪酸代谢相关过程。
{"title":"Identification of the Metabolic Characteristic of Organ Fibrosis Using Microbial Analysis on RNA-seq Data.","authors":"Zitong Wang, Ping Wang, Guoyou He, Liang Cheng, Tianyu Li, Yan Wang, Hong Li","doi":"10.2174/0115665232257596231011110813","DOIUrl":"https://doi.org/10.2174/0115665232257596231011110813","url":null,"abstract":"<p><strong>Background: </strong>Fibrosis refers to abnormal deposition of extracellular matrix, which leads to organ dysfunction. Metabolic alterations, especially enhanced glycolysis and suppressed fatty acid oxidation, are recognized as an essential pathogenic process of fibrosis. Recently, several reports indicate that the changes in microbiota composition are associated with metabolic disorders, suggesting microbes may contribute to organ fibrosis by regulating metabolic processes.</p><p><strong>Method: </strong>In this study, microbial reannotation was carried out on the RNA-seq data of fibrotic organs. Then, the microbial composition differences among healthy and fibrotic organ samples were determined by alpha and beta diversity analysis. Common and specific microbial markers of fibrosis were also identified by LEfSe. After that, the correlation analysis of the characteristic microbe-- gene-functional pathway was conducted to confirm the effects of microbes on host metabolism.</p><p><strong>Result: </strong>The results showed that the microbial composition significantly differed between healthy and diseased organs. Besides, the common characteristic microbes interacted closely with each other and contributed to fibrosis through symbiosis or inhibition. The largest proportion in fibrosis organs was Proteobacteria, which was the main source of pathogenic microbes.</p><p><strong>Conclusion: </strong>Further study found that the metabolic alteration driven by common and special characteristic microbes in fibrotic organs focused on the processes related to glycolysis and fatty acid metabolism.</p>","PeriodicalId":10798,"journal":{"name":"Current gene therapy","volume":" ","pages":""},"PeriodicalIF":3.8,"publicationDate":"2025-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142946276","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Current gene therapy
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