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Segmentation of Thoracic Organs through Distributed Extraction of Visual Feature Patterns Utilizing Resio-Inception U-Net and Deep Cluster Recognition Techniques. 利用 Resio-Inception U-Net 和深度聚类识别技术,通过分布式提取视觉特征模式分割胸腔脏器
IF 3.6 4区 医学 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2024-01-01 DOI: 10.2174/0115665232262165231201113932
Karthikeyan Saminathan, Tathagat Banerjee, Devi Priya Rangasamy, Meenalosini Vimal Cruz

Background: Segmentation of medical images plays a key role in the correct identification and management of different diseases. In this study, we present a new segmentation method that meets the difficulties posed by sophisticated organ shapes in computed tomography (CT) images, particularly targeting lung, breast, and gastric cancers.

Methods: Our suggested methods, Resio-Inception U-Net and Deep Cluster Recognition (RIUDCR), use a Residual Inception Architecture, which combines the power of residual connections and inception blocks to achieve cutting-edge segmentation performance while reducing the risk of overfitting.

Results: We present mathematical equations and functions that describe the design, including the encoding and decoding steps within the UC-Net system. Furthermore, we provide strong testing results that show the effectiveness of our method. Through thorough testing on varied datasets, our method regularly beats current techniques, achieving amazing precision and stability in organ task segmentation. These results show the promise of our residual inception architecture in better medical picture analysis.

Conclusion: In summary, our research not only shows a state-of-the-art segment methodology but also reinforces its usefulness through thorough testing. The inclusion of residual inception architecture in medical picture segmentation offers good possibilities for improving the identification and management of disease planning.

医学图像的分割在正确识别和治疗不同疾病方面起着关键作用。在这项研究中,我们提出了一种新的分割方法,以应对计算机断层扫描(CT)图像中复杂器官形状带来的困难,尤其是针对肺癌、乳腺癌和胃癌。我们建议的方法--残差截取 U 网和深度簇识别(RIUDCR)--使用残差截取架构,该架构结合了残差连接和截取块的力量,在降低过拟合风险的同时实现了最先进的分割性能。我们提出了描述设计的数学公式和函数,包括 UC-Net 系统内的编码和解码步骤。此外,我们还提供了有力的测试结果,证明了我们方法的有效性。通过对不同数据集的全面测试,我们的方法经常击败现有技术,在器官任务分割方面实现了惊人的精确性和稳定性。这些结果表明,我们的残差阈值架构有望更好地进行医学图片分析。总之,我们的研究不仅展示了最先进的分割方法,还通过全面测试加强了其实用性。在医学图片分割中加入残留萌芽结构为改善疾病规划的识别和管理提供了良好的可能性。
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引用次数: 0
Hemophilia Healing with AAV: Navigating the Frontier of Gene Therapy. 用 AAV 治疗血友病:探索基因疗法的前沿。
IF 3.6 4区 医学 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2024-01-01 DOI: 10.2174/0115665232279893231228065540
Safir Ullah Khan, Munir Ullah Khan, Muhammad Suleman, Amrah Inam, Muhammad Azhar Ud Din

Gene therapy for hemophilia has advanced tremendously after thirty years of continual study and development. Advancements in medical science have facilitated attaining normal levels of Factor VIII (FVIII) or Factor IX (FIX) in individuals with haemophilia, thereby offering the potential for their complete recovery. Despite the notable advancements in various countries, there is significant scope for further enhancement in haemophilia gene therapy. Adeno-associated virus (AAV) currently serves as the primary vehicle for gene therapy in clinical trials targeting haemophilia. Subsequent investigations will prioritize enhancing viral capsid structures, transgene compositions, and promoters to achieve heightened transduction efficacy, diminished immunogenicity, and more predictable therapeutic results. The present study indicates that whereas animal models have transduction efficiency that is over 100% high, human hepatocytes are unable to express clotting factors and transduction efficiency to comparable levels. According to the current study, achieving high transduction efficiency and high levels of clotting factor expression in human hepatocytes is still insufficient. It is also crucial to reduce the risk of cellular stress caused by protein overload. Despite encountering various hurdles, the field of haemophilia gene therapy holds promise for the future. As technology continues to advance and mature, it is anticipated that a personalized therapeutic approach will be developed to cure haemophilia effectively.

经过三十年的不断研究和发展,血友病基因疗法取得了巨大进步。医学科学的进步促进了血友病患者体内因子 VIII (FVIII) 或因子 IX (FIX) 达到正常水平,从而为他们的完全康复提供了可能。尽管各国都取得了显著进展,但血友病基因疗法仍有很大的发展空间。目前,在针对血友病的临床试验中,腺相关病毒(AAV)是基因治疗的主要载体。后续研究将优先考虑加强病毒外壳结构、转基因成分和启动子,以提高转导效率,降低免疫原性,实现更可预测的治疗效果。本研究表明,动物模型的转导效率高达 100%以上,而人类肝细胞却无法表达凝血因子,转导效率也无法达到同等水平。根据目前的研究,在人类肝细胞中实现高转导效率和高水平的凝血因子表达仍是不够的。此外,降低蛋白质超载造成的细胞压力风险也至关重要。血友病基因治疗领域尽管遇到了各种障碍,但未来大有可为。随着技术的不断进步和成熟,预计将开发出一种个性化的治疗方法来有效治愈血友病。
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引用次数: 0
Splicing DNA Damage Adaptations for the Management of Cancer Cells 剪接DNA损伤对癌细胞管理的适应性
IF 3.6 4区 医学 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-11-29 DOI: 10.2174/0115665232258528231018113410
Arun Kumar Singh, Deepika Yadav, Rishabha Malviya
: Maintaining a tumour cell's resistance to apoptosis (organized cell death) is essential for cancer to metastasize. Signal molecules play a critical function in the tightly regulated apoptotic process. Apoptosis may be triggered by a wide variety of cellular stresses, including DNA damage, but its ultimate goal is always the same: the removal of damaged cells that might otherwise develop into tumours. Many chemotherapy drugs rely on cancer cells being able to undergo apoptosis as a means of killing them. The mechanisms by which DNA-damaging agents trigger apoptosis, the interplay between pro- and apoptosis-inducing signals, and the potential for alteration of these pathways in cancer are the primary topics of this review.
维持肿瘤细胞对细胞凋亡(有组织的细胞死亡)的抵抗力是癌症转移的必要条件。信号分子在严格调控的细胞凋亡过程中起着关键作用。细胞凋亡可能由多种细胞应激触发,包括DNA损伤,但其最终目标始终是相同的:清除受损细胞,否则可能发展成肿瘤。许多化疗药物依赖于癌细胞能够经历凋亡作为杀死它们的一种手段。本文综述了dna损伤剂触发细胞凋亡的机制、促凋亡和诱导凋亡信号之间的相互作用以及这些途径在癌症中的潜在改变。
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引用次数: 0
Acknowledgements to Reviewers 审稿人致谢
4区 医学 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-10-01 DOI: 10.2174/156652322305230816165521
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引用次数: 0
HCST Expression Distinguishes Immune-hot and Immune-cold Subtypes in Pancreatic Ductal Adenocarcinoma 撤回: HCST表达可区分胰腺导管腺癌中的免疫热亚型和免疫冷亚型
IF 3.6 4区 医学 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-07-20 DOI: 10.2174/1566523223666230720101531
Boyi Ma, Dai-Jun Zhang, Yabin Hu, Xianghan Chen, Ruining Gong, Ke Lei, Qian Yu, He Ren

Introduction: Pancreatic ductal adenocarcinoma (PDAC) is the most prevalent malignancyof the pancreas, and the incidence of this disease is approximately equivalent to the mortality rate.Immunotherapy has made a remarkable breakthrough in numerous cancers, while its efficacy inPDAC remains limited due to the immunosuppressive microenvironment. Immunotherapy efficacy ishighly correlated with the abundance of immune cells, particularly cytotoxic T cells. Therefore, molecular classifier is needed to identify relatively hot tumors that may benefit from immunotherapy

Method: In this study, we carried out a transcriptome analysis of 145 pancreatic tumors to define the underlying immune regulatory mechanism driving the PDAC immunosuppressive microenvironment. Theimmune subtype was identified by consensus clustering, and the underlying PDAC immune activationmechanism was thoroughly examined using single sample gene set enrichment analysis (ssGSEA). Areaunder the curve (AUC) of the receiver operating characteristic (ROC) curve was used to assess the accuracy of the molecular classifier in differentiating immunological subgroups of PDAC.5

Result: The protein level of molecular classifier was verified by immunohistochemistry in humanPDAC tissue. Immune-hot tumors displayed higher levels of immune cell infiltration and immunecheckpoint, in line with enriched immune escape pathways. Hematopoietic cell signal transducer(HCST), a molecular classifier used to differentiate immunological subtypes of PDAC, has shown asubstantial link with the expression levels of cytotoxic markers, such as CD8A and CD8B. At the single cell level, we found that HCST was predominantly expressed in CD8T cells. By immunohistochemistry and survival analysis, we further demonstrated the prognostic value of HCST in PDAC.

Conclusion: We identified HCST as a molecular classifier to distinguish PDAC immune subtypes,which may be useful for early diagnosis and targeted therapy of PDAC.

由于作者没有回应编辑的要求以满足编辑要求,因此文章已被撤稿。《Bentham Science》对由此造成的不便向本刊读者致歉。《Bentham 编辑部关于文章撤稿的政策》可在 https://benthamscience.com/editorial-policies-main.phpBentham Science 免责声明:向本刊投稿的稿件未曾在其他地方发表过,也不会同时在其他地方投稿或发表,这是发表的条件之一。此外,任何已在其他地方发表的数据、插图、结构或表格都必须报告,并且必须获得复制的版权许可。严禁剽窃,一旦发现剽窃或捏造信息,作者同意出版商有法律权利对作者采取适当措施。提交稿件即表示作者同意,如果文章被接受发表,其版权即转让给出版商。
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引用次数: 0
Effective Combination of Single Cell Analysis and Gene Therapy 单细胞分析与基因治疗的有效结合
IF 3.6 4区 医学 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-02-01 DOI: 10.2174/156652322301221113224009
Liang Cheng
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引用次数: 0
Meet the Editorial Board Member 与编辑委员会成员见面
4区 医学 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-02-01 DOI: 10.2174/156652322301221113224455
Lei Chen
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引用次数: 0
The Role of RNA m6A Modification in Cancer Glycolytic Reprogramming. RNA m6A修饰在癌症糖酵解重编程中的作用。
IF 3.6 4区 医学 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1566523222666220830150446
Yuanqi Li, Hao Huang, Shaoxian Wu, You Zhou, Tao Huang, Jingting Jiang

As one of the main characteristics of neoplasia, metabolic reprogramming provides nutrition and energy to enhance cell proliferation and maintain environment homeostasis. Glycolysis is one of the most important components of cancer metabolism and the Warburg effect contributes to the competitive advantages of cancer cells in the threatened microenvironment. Studies show strong links between N6-methyladenosine (m6A) modification and metabolic recombination of cancer cells. As the most abundant modification in eukaryotic RNA, m6A methylation plays important roles in regulating RNA processing, including splicing, stability, transportation, translation and degradation. The aberration of m6A modification can be observed in a variety of diseases such as diabetes, neurological diseases and cancers. This review describes the mechanisms of m6A on cancer glycolysis and their applications in cancer therapy and prognosis evaluation, aiming to emphasize the importance of targeting m6A in modulating cancer metabolism.

代谢重编程是肿瘤的主要特征之一,为细胞增殖和维持环境稳态提供营养和能量。糖酵解是肿瘤代谢中最重要的组成部分之一,Warburg效应有助于癌细胞在受威胁的微环境中获得竞争优势。研究表明n6 -甲基腺苷(m6A)修饰与癌细胞代谢重组之间存在密切联系。作为真核RNA中最丰富的修饰,m6A甲基化在RNA的剪接、稳定性、运输、翻译和降解等加工过程中起着重要的调节作用。m6A修饰的畸变可以在多种疾病中观察到,如糖尿病、神经系统疾病和癌症。本文就m6A在肿瘤糖酵解中的作用机制及其在肿瘤治疗和预后评价中的应用进行综述,旨在强调靶向m6A在调节肿瘤代谢中的重要性。
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引用次数: 2
Lentiviral Micro-dystrophin Gene Treatment into Late-stage mdx Mice for Duchenne Muscular Dystrophy Disease. 慢病毒微营养不良蛋白基因治疗晚期mdx小鼠杜氏肌营养不良症。
IF 3.6 4区 医学 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1566523223666230407091317
Selen Abanuz Eren, Cihan Tastan, Kevser Buse Karadeniz, Raife Dilek Turan, Didem Cakirsoy, Derya Dilek Kancagi, Sevdican Ustun Yilmaz, Mustafa Oztatlici, Hulya Oztatlici, Samed Ozer, Gamze Tumentemur, Ahmet Tarık Baykal, Ercument Ovali

Aim: Duchenne Muscular Dystrophy (DMD) results in a deficiency of dystrophin expression in patient muscle fibers, leading to progressive muscle degeneration. Treatment of DMD has undertaken current transformation with the advancement of novel gene therapy and molecular biology techniques, which are secure, well-tolerated, and effective therapeutic approaches.

Introduction: DMD gene therapies have mainly focused on young DMD patients as in vivo animal model trials have been performed in 0-1-month DMD mice. However, it has not yet been answered how micro-dystrophin encoding lentiviral treatment affects Dystrophin expression and DMD symptoms in 10-month mdx mice.

Methods: We planned to integrate the micro-Dystrophin gene sequence into the muscle cells by viral transfer, using micro-Dystrophin-encoding lentivirus to reduce the dystrophic pathology in late-stage dmd mice. The histopathological and physiological-functional regeneration activities of the lentiviralmicro- Dystrophin gene therapy methods were compared, along with changes in temporal Dystrophin expression and their functionality, toxicity, and gene expression level.

Results: Here, we showed that the micro-dystrophin transgene transfers intramuscularly and intraperitoneally in late-stage dmd-mdx-4cv mice restored dystrophin expression in the skeletal and cardiac muscle (p <0.001). Furthermore, motor performance analysis, including hanging and tracking tests, improved statistically significantly after the treatment (p <0.05).

Conclusion: Consequently, this study suggests that patients in the late stages of muscular dystrophy can benefit from lentiviral micro-dystrophin gene therapies to present an improvement in dystrophic muscle pathology.

目的:杜氏肌营养不良症(DMD)导致患者肌纤维中肌营养不良蛋白表达不足,导致进行性肌肉变性。随着新的基因治疗和分子生物学技术的进步,DMD的治疗已经发生了当前的转变,这些技术是安全、耐受性良好、有效的治疗方法。简介:DMD基因治疗主要集中在年轻DMD患者身上,在0-1月龄DMD小鼠中进行了体内动物模型试验。然而,在10个月大的mdx小鼠中,微肌营养不良蛋白编码慢病毒治疗是如何影响肌营养不良蛋白表达和DMD症状的,目前还没有答案。方法:我们计划通过病毒转移将微肌营养不良蛋白基因序列整合到肌细胞中,使用编码微肌营养不良蛋白的慢病毒来减少晚期dmd小鼠的营养不良病理。比较慢病毒微肌营养不良蛋白基因治疗方法的组织病理学和生理功能再生活性,以及时间肌营养不良蛋白表达的变化及其功能、毒性和基因表达水平。结果:本研究表明,在dmd-mdx-4cv晚期小鼠中,微肌营养不良蛋白转基因肌内和腹腔内转移恢复了骨骼肌和心肌中肌营养不良蛋白的表达(p p)。结论:因此,本研究表明,肌营养不良晚期患者可以受益于慢病毒微肌营养不良蛋白基因治疗,改善肌营养不良病理。
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引用次数: 1
microRNA-based Genetic Therapy in Leukemia: Properties, Delivery, and Experimental Models. 基于微rna的白血病基因治疗:特性、传递和实验模型。
IF 3.6 4区 医学 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1566523223666230426153622
Nayra Oliveira Prado, Denise Kusma Wosniaki, Anelis Maria Marin, Carolina Mathias, Heloisa Bruna Soligo Sanchuki, Dalila Luciola Zanette, Mateus Nóbrega Aoki

Leukemia is a type of cancer that affects white blood cells. In this disease, immature blood cells undergo genetic mutations, leading to excessive replication and reduced cell death compared to healthy cells. In cancer, there may be the activation of oncogenes and the deactivation of tumor suppressor genes that control certain cellular functions. Despite the undeniable contribution to the patient's recovery, conventional cancer treatments may have some not-so-beneficial effects. In this case, gene therapy appears as an alternative to classical treatments. Gene therapy delivers genetic material to cells to replace or modify dysfunctional genes, a safe method for neoplasms. One of the types of nucleic acids explored in gene therapy is microRNA (miRNA), a group of endogenous, non-proteincoding, small single-stranded RNA molecules involved in the regulation of gene expression, cell division, differentiation, angiogenesis, migration, apoptosis, and carcinogenesis. This review aims to bring together the most recent advances found in the literature on cancer gene therapy based on microRNAs in the oncological context, focusing on leukemia.

白血病是一种影响白细胞的癌症。在这种疾病中,未成熟的血细胞发生基因突变,导致与健康细胞相比过度复制和减少细胞死亡。在癌症中,可能存在致癌基因的激活和控制某些细胞功能的肿瘤抑制基因的失活。尽管对病人的康复有不可否认的贡献,但传统的癌症治疗可能有一些不那么有益的影响。在这种情况下,基因治疗似乎是传统治疗的替代方案。基因治疗将遗传物质传递到细胞中,以取代或修饰功能失调的基因,这是治疗肿瘤的一种安全方法。在基因治疗中探索的核酸类型之一是microRNA (miRNA),这是一组内源性、非蛋白质编码的小单链RNA分子,参与基因表达、细胞分裂、分化、血管生成、迁移、凋亡和癌变的调控。本综述旨在汇集基于microRNAs的肿瘤基因治疗的最新进展,重点是白血病。
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引用次数: 0
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Current gene therapy
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