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SLC2A3 is a Potential Factor for Head and Neck Squamous Cancer Development through Tumor Microenvironment Alteration. SLC2A3 是通过肿瘤微环境改变导致头颈部鳞癌发展的潜在因素
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2025-01-01 DOI: 10.2174/0115665232291300240509104344
Wei Jiang, Sheng Xu, Ping Li

Introduction: Tumor immunity has garnered increasing attention in cancer treatment and progression. However, there is still a challenge in understanding the mechanisms of specific molecules affecting the clinical prognosis and tumor microenvironment (TME).

Methods: Here, we applied the ESTIMATE algorithm to calculate the immune and stromal scores in 504 HNSC cases from TCGA. Patients were grouped according to the median value of the immune and stromal. Clinicopathological characteristics and differentially expressed genes (DEG) were analyzed. Subsequently, LASSO, COX regression, survival analysis, and clinicopathological characteristics were conducted. Subsequently, SLC2A3 was determined as a predictive factor that high expression of SLC2A3 at the mRNA and protein levels predicted a worse clinical prognosis. GSEA25099 was utilized for external validation of immune infiltration, while tissue PCR, IHC, and Western Blot were used to confirm the expression levels of SLC2A3.

Results: A series of immune-infiltration analyses showed that SLC2A3 expression was negatively correlated with CD8+ T cells, significantly affecting the survival prognosis of HNSC. In the GSEA analysis, the high expression of SLC2A3 was mainly enriched for immune-related biological processes. Meanwhile, high expression of SLC2A3 possessed higher TIDE scores and was also strongly positively correlated with a series of immune checkpoints affecting survival prognosis, thus causing greater susceptibility to immune escape.

Conclusion: Conclusively, SLC2A3 is a potential oncogene and factor of HNSC development, notably by an altered state of the immune microenvironment, immune-suppressive regulation, and immune escape.

简介肿瘤免疫在癌症治疗和进展中日益受到关注。然而,了解特定分子影响临床预后和肿瘤微环境(TME)的机制仍是一项挑战:在此,我们应用ESTIMATE算法计算了TCGA中504例HNSC病例的免疫和基质评分。根据免疫和基质评分的中位值对患者进行分组。对临床病理特征和差异表达基因(DEG)进行了分析。随后进行了LASSO、COX回归、生存分析和临床病理特征分析。随后,SLC2A3 被确定为一个预测因素,即 SLC2A3 在 mRNA 和蛋白水平的高表达预示着较差的临床预后。GSEA25099用于免疫浸润的外部验证,组织PCR、IHC和Western Blot用于确认SLC2A3的表达水平:一系列免疫浸润分析表明,SLC2A3的表达与CD8+ T细胞呈负相关,显著影响HNSC的生存预后。在GSEA分析中,SLC2A3的高表达主要富集于免疫相关的生物学过程。同时,SLC2A3的高表达具有更高的TIDE评分,还与一系列影响生存预后的免疫检查点呈强正相关,从而导致更易发生免疫逃逸:结论:SLC2A3是一种潜在的癌基因,也是HNSC发展的一个因素,主要通过改变免疫微环境状态、免疫抑制调节和免疫逃逸来实现。
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引用次数: 0
Neurotrophins as Potential Gene Therapy Targets for Huntington's Disease. 作为亨廷顿氏病潜在基因治疗靶点的神经营养素。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2025-01-01 DOI: 10.2174/0115665232348486241025084202
Sagor Kumar Roy, Ashima Barman, Kumary Labone Sarkar, Seidu A Richard, Bijal Arvinkumar Lacmane

"Huntington's disease" (HD) is an autosomal dominant hereditary neurodegenerative disease characterized by defects in efferent striatal neurons, cortical neurons, and the basal ganglia. The pathogenesis of HD is still unclear, and there is currently no curative therapy for this disorder. This review emphasizes the potential beneficial effects of various neurotrophic factors in HD. PubMed, Web of Science, Embase, and google scholar databases were used to search for all studies on the efficacy of neurotrophic factors in HD. Several gene therapy strategies have been employed to treat HD, including gene therapy with a variety of neuroprotective factors. Moreover, a wide variability of gene therapy approaches such as a neurotrophin, has shown promising results for both prevention and neuroprotection in HD, which may be due to their potential to prevent neuronal cell death or decrease neurodegeneration, thereby promoting the growth of innovative axons, dendrites, and synapses leading to improvement of HD. Neurotrophic factors may be suitable as neuroprotective therapy agents in HD. Therefore, substantial research on gene therapy should be conducted to provide better treatment options for HD in the future.

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引用次数: 0
From DNA Editing to RNA Regulation: The Breakthroughs of CRISPR and Mega-CRISPR. 从DNA编辑到RNA调控:CRISPR和Mega-CRISPR的突破。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-12-04 DOI: 10.2174/0115665232347515241128111207
Dinesh Kumar, Debayan Sil, Komal, Balak Das Kurmi, Manish Kumar
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引用次数: 0
Unraveling Glioblastoma: TME Implication and Gene Therapy Advances. 揭开胶质母细胞瘤的神秘面纱:TME 影响与基因疗法进展。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-11-14 DOI: 10.2174/0115665232351747241113050243
Rohith Raali, Suresh P K

Glioblastoma is a malignant manifestation of a solid brain tumour with a very dismal prognosis due to an overall median survival of 14 months. The currently administered Standard treatment plan, the STUPP regimen, is not very effective in tackling this neoplasia. A major concern that affects the development of new drug formulations, specifically for Glioma, is the inherent sub-clonal heterogeneity, which includes the dynamic and intricate nature of the Tumour Microenvironment (TME). Targeting the cellular niche using personalized medication for glioma specifically gene therapy, seems to be promising, with most studies in preclinical models yielding optimistic results. This paper analyses the great headways made in glioma gene therapy in the last 10 years while looking into different therapeutic strategies. That said, certain challenges do plague the clinical use of gene therapy which have been highlighted in the hopes that future researchers will address these concerns and further propel gene therapy in its journey from the Lab to the bedside.

胶质母细胞瘤是一种恶性实体瘤,预后极差,中位生存期仅为 14 个月。目前采用的标准治疗方案--STUPP 方案,对这种肿瘤的治疗效果不佳。影响新药研发(尤其是针对胶质瘤)的一个主要问题是其固有的亚克隆异质性,包括肿瘤微环境(TME)的动态和复杂性。针对胶质瘤的个性化药物治疗,特别是基因治疗,似乎很有前景,大多数临床前模型研究都取得了乐观的结果。本文分析了过去十年中胶质瘤基因疗法取得的巨大进步,同时探讨了不同的治疗策略。尽管如此,基因疗法的临床应用仍面临着一些挑战,本文对此进行了强调,希望未来的研究人员能解决这些问题,进一步推动基因疗法从实验室走向临床。
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引用次数: 0
Comprehensive Analysis and Experimental Validation of HEPACAM2 as a Potential Prognosis Biomarker and Immunotherapy Target in Colorectal Cancer. HEPACAM2 作为结直肠癌潜在预后生物标记物和免疫疗法靶点的综合分析和实验验证
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-11-01 DOI: 10.2174/0115665232325395241018103006
Shouguang Wang, Lijuan Zhang, Dongbing Li, Miaomiao Gou

Background: The role of HEPACAM family member 2 (HEPACAM2) is unclear in colorectal cancer (CRC).

Objective: The objective of this study was to perform an extensive examination of HEPACAM2 and validate it experimentally in CRC.

Methods: This study investigated the significance of HEPACAM2 in CRC and its potential diagnostic utility utilizing data from the Cancer Genome Atlas (TCGA) database. Additionally, the study examined potential regulatory networks involving HEPACAM2, including its associations with immune infiltration, immune checkpoint genes, tumor mutational burden (TMB), microsatellite instability (MSI), mRNA expression-based stemness index (mRNAsi), and drug sensitivity in CRC. The expression of HEPACAM2 was further validated using the GSE89076 dataset, and quantitative reverse transcription PCR (qRT-PCR) was employed to confirm HEPACAM2 expression levels in six pairs of CRC tissue samples.

Results: HEPACAM2 exhibited abnormal expression patterns in various types of cancer, including CRC. A decrease in HEPACAM2 expression levels in CRC was found to be significantly correlated with the T stage (p < 0.001). Reduced HEPACAM2 expression in CRC patients was also linked to poorer overall survival (OS) (p = 0.007). The expression levels of HEPACAM2 in CRC patients were identified as an independent prognostic factor (p = 0.016). Furthermore, HEPACAM2 was associated with TCF-dependent signaling in response to WNT, G2/M checkpoints, and other pathways. The expression of HEPACAM2 in CRC was found to be associated with immune infiltration, immune checkpoint genes, TMB / MSI, and mRNAsi. Additionally, the expression of HEPACAM2 in CRC was significantly and inversely correlated with the drug sensitivities to gw772405x and 6-phenyl-6h-indeno[1,2-c]isoquinoline-5,11-dione. qRT-PCR confirmed that the expression level of HEPACAM2 was found to be lowly expressed in CRC tissues.

Conclusion: These findings suggest that HEPACAM2 may serve as a potential prognostic biomarker and immunotherapeutic target for CRC patients.

背景:HEPACAM 家族成员 2(HEPACAM2)在大肠癌(CRC)中的作用尚不明确:HEPACAM家族成员2(HEPACAM2)在结直肠癌(CRC)中的作用尚不明确:本研究的目的是对 HEPACAM2 进行广泛检查,并在 CRC 中进行实验验证:本研究利用癌症基因组图谱(TCGA)数据库中的数据,研究了HEPACAM2在CRC中的重要性及其潜在的诊断作用。此外,该研究还考察了涉及HEPACAM2的潜在调控网络,包括其与免疫浸润、免疫检查点基因、肿瘤突变负荷(TMB)、微卫星不稳定性(MSI)、基于mRNA表达的干性指数(mRNAsi)和药物敏感性的关联。利用GSE89076数据集进一步验证了HEPACAM2的表达,并采用定量反转录PCR(qRT-PCR)技术确认了6对CRC组织样本中HEPACAM2的表达水平:结果:HEPACAM2在包括CRC在内的多种癌症中均有异常表达。研究发现,CRC 中 HEPACAM2 表达水平的降低与 T 分期有显著相关性(p < 0.001)。HEPACAM2 在 CRC 患者中的表达减少还与总生存期(OS)较差有关(p = 0.007)。HEPACAM2在CRC患者中的表达水平被认为是一个独立的预后因素(p = 0.016)。此外,HEPACAM2 还与 TCF 依赖性信号转导、WNT、G2/M 检查点和其他通路有关。研究发现,HEPACAM2 在 CRC 中的表达与免疫浸润、免疫检查点基因、TMB / MSI 和 mRNAsi 相关。此外,HEPACAM2在CRC中的表达与对gw772405x和6-苯基-6h-茚并[1,2-c]异喹啉-5,11-二酮的药物敏感性显著成反比:这些研究结果表明,HEPACAM2 可作为 CRC 患者潜在的预后生物标志物和免疫治疗靶点。
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引用次数: 0
Probing the Depths of Molecular Complexity: STAT3 as a Key Architect in Colorectal Cancer Pathogenesis. 探索分子复杂性的深渊:STAT3是结直肠癌发病机制的关键架构师
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-28 DOI: 10.2174/0115665232336447241010094744
Muhammad Suleman, Safir Ullah Khan, Shahid Ali, Abdullah Alghamdi, Mohammed Alissa, Rayan Y Mushtaq, Sergio Crovella

Colorectal cancer (CRC) has become a significant threat in recent decades, and its incidence is predicted to continue rising. Despite notable advancements in therapeutic strategies, managing CRC poses complex challenges, primarily due to the lack of clinically feasible therapeutic targets. Among the myriad molecules implicated in CRC, the signal transducer and activator of transcription 3 (STAT3) stands out as a promising target tightly regulated by various genes. This intracellular transcription factor, spanning 750-795 amino acids and weighing approximately 92 kDa, is crucial in key cellular activities such as growth, migration, invasion, inflammation, and angiogenesis. Aberrant activation of STAT3 signaling has been linked to various cancers, including CRC. Therefore, targeting this signaling pathway holds significance for potential CRC treatment strategies.STAT3, as a central intracellular transcription factor, is implicated in colorectal cancer development by activating aberrant signaling pathways. Numerous studies have demonstrated that the abnormal hyperactivation of STAT3 in CRC tissues enhances cell proliferation, suppresses apoptosis, promotes angiogenesis, and facilitates tumor invasion and metastasis. As a focal point in colorectal cancer research, STAT3 emerges as a promising candidate for detecting and treating CRC. This review aims to present recent data on STAT3, emphasizing the activation and functions of STAT3 inhibitors in CRC. Indeed, STAT3 inhibitors have been identified to have therapeutic potential in CRC, especially inhibitors targeting the DNA-binding domain (DBD). Indeed, STAT3 inhibitors have been identified to have a therapeutic potential in CRC, especially the inhibitors targeting the DNA binding domain (DBD). For example, imatinib acts by targeting cell surface receptors, and these inhibitors have shown potential for the control and treatment of tumor growth, angiogenesis, and metastasis. Imatinib, for example acts by targeting cell surface receptors, and these inhibitors have shown the future direction toward the control and treatment of tumor growth, angiogenesis, and metastasis.

近几十年来,结直肠癌(CRC)已成为一种严重威胁,预计其发病率还将继续上升。尽管治疗策略取得了显著进展,但 CRC 的治疗仍面临着复杂的挑战,这主要是由于缺乏临床上可行的治疗靶点。在与 CRC 有关的众多分子中,信号转导和激活转录因子 3(STAT3)是一个很有希望的靶点,它受到各种基因的严格调控。这种细胞内转录因子有 750-795 个氨基酸,重约 92 kDa,在生长、迁移、侵袭、炎症和血管生成等关键细胞活动中起着至关重要的作用。STAT3 信号的异常激活与包括 CRC 在内的多种癌症有关。STAT3作为细胞内的核心转录因子,通过激活异常信号通路与结直肠癌的发生发展有关。大量研究表明,STAT3 在 CRC 组织中的异常过度激活会增强细胞增殖、抑制细胞凋亡、促进血管生成,并有利于肿瘤的侵袭和转移。作为结直肠癌研究的一个焦点,STAT3 成为检测和治疗 CRC 的一个有希望的候选对象。本综述旨在介绍有关 STAT3 的最新数据,强调 STAT3 抑制剂在 CRC 中的激活和功能。事实上,STAT3 抑制剂已被确认对 CRC 具有治疗潜力,尤其是针对 DNA 结合域(DBD)的抑制剂。事实上,STAT3 抑制剂已被确认对 CRC 具有治疗潜力,尤其是针对 DNA 结合域(DBD)的抑制剂。例如,伊马替尼通过靶向细胞表面受体发挥作用,这些抑制剂已显示出控制和治疗肿瘤生长、血管生成和转移的潜力。例如,伊马替尼通过靶向细胞表面受体发挥作用,这些抑制剂已显示出控制和治疗肿瘤生长、血管生成和转移的未来方向。
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引用次数: 0
Gene Augmentation Techniques to Stimulate Wound Healing Process: Progress and Prospects. 刺激伤口愈合过程的基因增强技术:进展与前景。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-23 DOI: 10.2174/0115665232316799241008073042
Jyotsana Dwivedi, Shubhi Kaushal, D Jeslin, L Karpagavalli, Rajesh Kumar, Dhruv Dev, Pranay Wal

Gene therapy has traditionally been used to treat individuals with late-stage cancers or congenital abnormalities. Numerous prospects for therapeutic genetic modifications have emerged with the discovery that gene therapy applications are far more extensive, particularly in skin and exterior wounds. Cutaneous wound healing is a complex, multistep process involving multiple steps and mediators that operate in a network of activation and inhibition processes. This setting presents a unique obstacle for gene delivery. Many gene delivery strategies have been developed, including liposomal administration, high-pressure injection, viral transfection, and the application of bare DNA. Among several gene transfer techniques, categorical polymers, nanoparticles, and liposomalbased constructs show great promise for non-viral gene transfer in wounds. Clinical experiments have shown that efficient transportation of certain polypeptides to the intended wound location is a crucial factor in wound healing. Genetically engineered cells can be used to produce and control the delivery of specific growth factors, thereby addressing the drawbacks of mechanically administered recombinant growth factors. We have discussed how repair mechanisms are based on molecules and cells, as well as their breakdown, and provided an overview of the methods and research conducted on gene transmission in tissue regeneration.

基因疗法传统上用于治疗晚期癌症患者或先天性畸形患者。随着人们发现基因治疗的应用范围更为广泛,尤其是在皮肤和外部伤口方面,治疗性基因修饰的前景更加广阔。皮肤伤口愈合是一个复杂的多步骤过程,涉及多个步骤和介质,这些步骤和介质在激活和抑制过程的网络中运作。这种情况给基因递送带来了独特的障碍。目前已开发出许多基因传递策略,包括脂质体给药、高压注射、病毒转染和裸 DNA 应用。在几种基因转移技术中,分类聚合物、纳米颗粒和脂质体构建物在伤口非病毒基因转移方面前景广阔。临床实验表明,将某些多肽有效运送到伤口的预定位置是伤口愈合的关键因素。基因工程细胞可用于生产和控制特定生长因子的输送,从而解决机械给药重组生长因子的缺点。我们讨论了修复机制如何以分子和细胞为基础,以及它们的分解,并概述了在组织再生中进行基因传输的方法和研究。
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引用次数: 0
Immune Modulation Strategies in Gene Therapy: Overcoming Immune Barriers and Enhancing Efficacy. 基因疗法中的免疫调节策略:克服免疫障碍,提高疗效。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-02 DOI: 10.2174/0115665232305409240918040639
Sivaprakasam S Amsaveni, Radha Mahendran, Vidhya C S, Dilip Kumar Chanchal, Sojomon Mathew, Mukesh Chandra Sharma, Jailani S, Syed Salman Ali

The immune system presents significant obstacles to gene therapy, which has limited its use in treating many illnesses. New approaches are needed to overcome these problems and improve the effectiveness of gene therapy. This study explores several techniques to immune regulation within gene therapy, a cutting-edge discipline that aims to optimise results by fine-tuning the immune response. We cover new ways to control the immune system and deliver therapeutic genes just where they are needed, including influencing immunological checkpoints, causing immunotolerance, and making smart use of immunomodulatory drugs. In addition, the study provides insight into new developments in the design of less immunogenic gene delivery vectors, which allow for the extension of transgene expression with minimal adverse immune reactions. In order to maximise the efficacy of gene-based therapies, this review analyses these novel approaches and gives a thorough overview of the present state of the art by addressing obstacles and pointing the way toward future developments in immune regulation. Not only does their integration provide new opportunities for the creation of safer and more effective gene treatments, but it also contains the key to overcome current obstacles.

免疫系统是基因疗法的重大障碍,这限制了它在治疗许多疾病方面的应用。我们需要新的方法来克服这些问题,提高基因治疗的效果。本研究探讨了基因疗法中的几种免疫调节技术,这是一门旨在通过微调免疫反应优化治疗效果的前沿学科。我们介绍了控制免疫系统并将治疗基因传递到所需位置的新方法,包括影响免疫检查点、引起免疫耐受以及巧妙利用免疫调节药物。此外,这项研究还深入探讨了免疫原性较低的基因递送载体设计方面的新进展,这种载体可以延长转基因表达的时间,同时将不良免疫反应降至最低。为了最大限度地提高基因疗法的疗效,这篇综述分析了这些新方法,并通过解决免疫调节方面的障碍和指明未来发展方向,全面概述了目前的技术水平。这些方法的整合不仅为创造更安全、更有效的基因疗法提供了新的机遇,而且还包含了克服当前障碍的关键。
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引用次数: 0
Identification of Gene Signatures Associated with COVID-19 across Children, Adolescents, and Adults in the Nasopharynx and Peripheral Blood by Using a Machine Learning Approach. 利用机器学习方法识别儿童、青少年和成人鼻咽部和外周血中与 COVID-19 相关的基因特征。
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-09-27 DOI: 10.2174/0115665232316769240912061652
YuSheng Bao, JingXin Ren, Lei Chen, Wei Guo, KaiYan Feng, Tao Huang, Yu-Dong Cai

Background: Significant variations in immune profiles across different age groups manifest distinct clinical symptoms and prognoses in Coronavirus Disease 2019 (COVID-19) patients. Predominantly, severe COVID-19 cases that require hospitalization occur in the elderly, with the risk of severe illness escalating with age among young adults, children, and adolescents.

Objective: This study aimed to delineate the unique immune characteristics of COVID-19 across various age groups and evaluate the feasibility of detecting COVID-19-induced immune alterations through peripheral blood analysis.

Methods: By employing a machine learning approach, we analyzed gene expression data from nasopharyngeal and peripheral blood samples of COVID-19 patients across different age brackets. Nasopharyngeal data reflected the immune response to COVID-19 in the upper respiratory tract, while peripheral blood samples provided insights into the overall immune system status. Both datasets encompassed COVID-19 patients and healthy controls, with patients divided into children, adolescents, and adult age groups. The analysis included the expression levels of 62,703 genes per patient. Then, 9 feature-sequencing methods (least absolute shrinkage and selection operator, light gradient boosting machine, Monte Carlo feature selection, random forest, ridge regression, adaptive boosting, categorical boosting, extremely randomized trees, and extreme gradient boosting) were employed to evaluate the association of the genes with COVID-19. Key genes were then utilized to develop efficient classification models.

Results: The findings identified specific markers: insulin-like growth factor binding protein 3 (downregulated in the peripheral blood of COVID-19 patients), interferon alpha-inducible protein 27 (upregulated), and SERPING1 (upregulated in nasopharyngeal tissues). In addition, fibulin-2 was downregulated in adolescent patients, but upregulated in the other groups, while epoxide hydrolase 3 was upregulated in healthy controls, but downregulated in children and adolescents.

Conclusion: This study offers valuable insights into the local and systemic immune responses of COVID-19 patients across age groups, aiding in identifying potential therapeutic targets and formulating personalized treatment strategies.

背景:冠状病毒病 2019(COVID-19)患者的临床症状和预后在不同年龄段的免疫特征方面存在显著差异。需要住院治疗的 COVID-19 重症病例主要发生在老年人身上,而在青壮年、儿童和青少年中,重症风险随着年龄的增长而上升:本研究旨在描述不同年龄组 COVID-19 的独特免疫特征,并评估通过外周血分析检测 COVID-19 引起的免疫改变的可行性:通过采用机器学习方法,我们分析了不同年龄段COVID-19患者鼻咽和外周血样本的基因表达数据。鼻咽部数据反映了上呼吸道对 COVID-19 的免疫反应,而外周血样本则提供了对整体免疫系统状态的洞察。这两个数据集包括 COVID-19 患者和健康对照组,患者分为儿童、青少年和成人三个年龄组。分析包括每位患者 62703 个基因的表达水平。然后,采用 9 种特征测序方法(最小绝对收缩和选择算子、轻梯度提升机、蒙特卡洛特征选择、随机森林、脊回归、自适应提升、分类提升、极端随机树和极端梯度提升)来评估基因与 COVID-19 的关联。然后利用关键基因开发出高效的分类模型:结果:研究结果确定了特定的标记:胰岛素样生长因子结合蛋白 3(在 COVID-19 患者外周血中下调)、干扰素α诱导蛋白 27(上调)和 SERPING1(在鼻咽组织中上调)。此外,青少年患者的纤维素-2 下调,而其他组别则上调;健康对照组的环氧化物水解酶 3 上调,而儿童和青少年则下调:本研究为了解不同年龄组 COVID-19 患者的局部和全身免疫反应提供了宝贵的信息,有助于确定潜在的治疗靶点和制定个性化的治疗策略。
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引用次数: 0
Pan-Cancer Single-Cell Analysis Revealing the Heterogeneity of Cancer-Associated Fibroblasts in Skin Tumors. 泛癌单细胞分析揭示皮肤肿瘤中癌症相关成纤维细胞的异质性
IF 3.8 4区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-09-25 DOI: 10.2174/0115665232331353240911080642
Yichi Zhang, Zhijie Zhao, Wenyi Huang, Byeong Seop Kim, Li Lin, Xin Li, Mengyuan Hou, Li Li, Yan Zhang, Wenjing Xi, Gang Chai

Background: Cancer-Associated Fibroblasts (CAFs) constitute a heterogeneous group of cells critical for the remodeling of the tumor microenvironment (TME). Given their significant impact on tumor progression, particularly in skin cancers, a deeper understanding of their characteristics and functions is essential.

Methods: This study employed a single-cell transcriptomic analysis to explore the diversity of CAFs within three major types of skin cancer: basal cell carcinoma, melanoma, and head and neck squamous cell carcinoma. We applied analytical techniques, including Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), Gene Set Enrichment Analysis (GSEA), pseudotime tracking, metabolic profiling, and stemness assessment to delineate and define the functional attributes of identified CAF subgroups.

Results: Our analysis successfully delineated nine distinct CAF subgroups across the studied tumor types. Of particular interest, we identified a novel CAF subtype, designated as C0, exclusive to basal cell carcinoma. This subtype exhibits phenotypic traits associated with invasive and destructive capabilities, significantly correlating with the progression of basal cell carcinoma. The identification of this subgroup provides new insights into the role of CAFs in cancer biology and opens avenues for targeted therapeutic strategies.

Conclusion: A pan-cancer analysis was performed on three cancers, BCC, MA, and HNSCC, focusing on tumor fibroblasts in TME. Unsupervised clustering categorized CAF into nine subpopulations, among which the C0 subpopulation had a strong correspondence with BCC-CAF and an invasive- destructive-related phenotype.

背景:癌症相关成纤维细胞(CAFs)是一类异质性细胞,对肿瘤微环境(TME)的重塑至关重要。鉴于它们对肿瘤进展的重大影响,尤其是在皮肤癌中,深入了解它们的特征和功能至关重要:本研究采用单细胞转录组分析方法,探讨了基底细胞癌、黑色素瘤和头颈部鳞状细胞癌这三大类皮肤癌中 CAFs 的多样性。我们应用了基因本体(GO)、京都基因和基因组百科全书(KEGG)、基因组富集分析(GSEA)、伪时间追踪、代谢谱分析和干性评估等分析技术来划分和定义已确定的CAF亚群的功能属性:我们的分析在所研究的肿瘤类型中成功划分出九个不同的CAF亚群。特别值得关注的是,我们发现了一种新的 CAF 亚型,命名为 C0,是基底细胞癌的专属亚型。该亚型表现出与侵袭和破坏能力相关的表型特征,与基底细胞癌的进展密切相关。该亚群的确定为了解 CAFs 在癌症生物学中的作用提供了新的视角,并为靶向治疗策略开辟了途径:我们对 BCC、MA 和 HNSCC 这三种癌症进行了泛癌症分析,重点研究了 TME 中的肿瘤成纤维细胞。无监督聚类将CAF分为九个亚群,其中C0亚群与BCC-CAF有很强的对应性,并具有侵袭性-破坏性相关表型。
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Current gene therapy
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