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Chemical Synthesis and Enzymatic Modification of Mangostins: A Comprehensive Review on Structural Modifications for Drug Discover. 芒果苷的化学合成和酶促修饰:药物发现中的结构改造综述》。
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.2174/0109298673312728241014025846
Jordan Joon-Yip Lew, Yeun-Mun Choo

Mangosteens, a prominent component of Garcinia mangostana, have been ex-tensively studied for their biological activities and structural modifications. Chemical methods, including cyclization reactions under acidic conditions, have yielded many de-rivatives, which often exhibit enhanced pharmacological properties compared to itself. Enzymatic biotransformation, such as glycosylation and oxidation mediated by fungal species and enzymes like horseradish peroxidase, have provided regioselective pathways to functionalized mangostin derivatives. These studies highlight the versatility of mangos-tin as a scaffold for designing compounds with tailored biological functions. Overall, mangosteen represents a promising platform for developing compounds with enhanced pharmacological activities, paving the way for innovative approaches in biomedicine and pharmaceutical sciences. This review provides a comprehensive examination of the chem-istry of mangosteens, detailing their total synthesis and the derivatives obtained through both chemical and enzymatic methodologies.

山竹果是藤黄科植物山竹果的主要成分,人们对其生物活性和结构改造进行了深入研究。化学方法,包括酸性条件下的环化反应,已经产生了许多去铆剂,这些去铆剂的药理特性往往比其本身更强。酶促生物转化(如由真菌和辣根过氧化物酶等酶介导的糖基化和氧化)为功能化芒果苷衍生物提供了区域选择性途径。这些研究凸显了山竹素作为设计具有定制生物功能的化合物支架的多功能性。总之,山竹素是开发具有更强药理活性的化合物的一个前景广阔的平台,为生物医学和制药科学的创新方法铺平了道路。本综述全面研究了山竹果的化学性质,详细介绍了山竹果的全合成以及通过化学和酶解方法获得的衍生物。
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引用次数: 0
Idebenone Attenuates Diabetic Retinopathy by Modulating Autophagy Via Targeting Akt Signaling. 艾地苯醌通过靶向 Akt 信号调节自噬作用减轻糖尿病视网膜病变
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.2174/0109298673339172241017114810
Zhenqian Yu, Gang Liu

Introduction: Diabetic Retinopathy (DR) is a common microvascular issue caused by diabetes. Idebenone (IDE) is a coenzyme Q10 analog and antioxidant that has been utilized in the treatment of neurodegenerative diseases.

Method: Our goal was to investigate how IDE might treat diabetic retinopathy. An in vivo DR model was established by injecting a single dose of streptozotocin (STZ). Rats were treated with IDE, and their vascular function was measured by ultrasound. The retina structure was checked by haematoxylin and eosin (HE) staining. The expression of biomarkers of autophagy and apoptosis was measured by western blotting assay. The retina endothelial cell line RF/6A was stimulated with high glucose (HG) and treated with IDE. Cell proliferation and apoptosis were assessed using the Edu assay, TUNEL assay, and flow cytometry, respectively.

Result: Reduced peak systolic velocity (PSV), mean velocity (MV), end-diastolic velocity (EDV), and increased pulsatility index (PI) and resistance index (RI) were observed in diabetic rats; however, these traits were reversed by IDE therapy. IDE alleviated the STZ-induced disordered retina structure. The IDE administration suppressed DR-induced apoptosis and autophagy both in vivo and in vitro. IDE suppressed the activation of Phosphatidylinositol 3 kinase (PI3K) signaling. Activation of PI3K abolished the IDE-alleviated retina damage and cell death.

Conclusion: IDE regulated the autophagy of retina cells to alleviate diabetic retinopathy via regulating the PI3K signaling pathway.

导言糖尿病视网膜病变(DR)是由糖尿病引起的常见微血管问题。艾地苯醌(IDE)是一种辅酶Q10类似物和抗氧化剂,已被用于治疗神经退行性疾病:我们的目标是研究 IDE 如何治疗糖尿病视网膜病变。通过注射单剂量链脲佐菌素(STZ),建立了体内 DR 模型。大鼠接受 IDE 治疗,并通过超声波测量其血管功能。通过血红素和伊红(HE)染色检查视网膜结构。自噬和细胞凋亡生物标志物的表达通过 Western 印迹法进行检测。用高糖(HG)刺激视网膜内皮细胞系 RF/6A,并用 IDE 处理。分别使用 Edu 试验、TUNEL 试验和流式细胞术评估细胞增殖和凋亡:结果:在糖尿病大鼠体内观察到收缩期峰值速度(PSV)、平均速度(MV)和舒张末期速度(EDV)降低,搏动指数(PI)和阻力指数(RI)升高,但 IDE 治疗可逆转这些特征。IDE 缓解了 STZ 引起的视网膜结构紊乱。在体内和体外,IDE都能抑制DR诱导的细胞凋亡和自噬。IDE抑制了磷脂酰肌醇3激酶(PI3K)信号的激活。PI3K的激活可消除IDE减轻的视网膜损伤和细胞死亡:结论:IDE通过调节PI3K信号通路来调节视网膜细胞的自噬,从而缓解糖尿病视网膜病变。
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引用次数: 0
Elucidating the Mechanisms of Astragalus Membranaceus in Colorectal Cancer Patients through Bioinformatics Analysis. 通过生物信息学分析阐明黄芪对结直肠癌患者的作用机制
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-31 DOI: 10.2174/0109298673344265241014114804
Shuwei Wang, Jiandong Tang, Gan Li, Songbing He

Background: Astragalus membranaceus has shown positive clinical efficacy in treating colorectal cancer (CRC).

Objective: This study aimed to identify the key active components of Astragalus and determine effective targets of these components in CRC patients.

Methods: We identified active components of Astragalus membranaceus and differentially expressed genes in traditional Chinese medicine systems pharmacology database and The Cancer Genome Atlas. Additionally, the enrichment analysis of differential target genes (DTGs) was performed using the R-package clusterProfiler. Immunocyte correlation analysis and non-coding regulatory network construction were performed for biomarkers using Spearman's method and NetworkAnalyst. Finally, molecular docking of biomarkers and their corresponding molecule drugs was done with Autodock Vina software.

Results: We identified 20 active components of Astragalus membranaceus and 1 403 target genes through screening. A total of 2 300 differentially expressed genes, and 3 035 hub genes in CRC were screened. The integration of the target genes with the significantly differentially expressed genes and Hub genes identified resulted in a total of 86 DTGs. Subsequently, the results showed 828 enriched GO biological processes, 184 enriched GO molecular functions, 59 enriched GO cellular components, and 46 enriched KEGG pathways. We also obtained a total of 143 PPI pairs involving 67 nodes. Additionally, we constructed 45 mRNA-TF pairs, 101 miRNA-mRNA pairs, and 200 miRNA- mRNA-TF triplets. Finally, molecular docking was performed for the active component quercetin with F2 and UGT1A1 and formic acid with FGA, AHSG, and KNG1.

Conclusion: This study identified the active components of Astragalus membranaceus and their corresponding targets in CRC. These findings provide robust evidence for precision drug therapy in patients with CRC.

背景黄芪在治疗结直肠癌(CRC)方面具有积极的临床疗效:本研究旨在确定黄芪的主要活性成分,并确定这些成分在 CRC 患者中的有效靶点:方法:我们在中药系统药理学数据库和癌症基因组图谱中鉴定了黄芪的活性成分和差异表达基因。此外,我们还使用 R 软件包 clusterProfiler 对差异靶基因(DTGs)进行了富集分析。利用斯皮尔曼法和 NetworkAnalyst 对生物标志物进行了免疫细胞相关性分析和非编码调控网络构建。最后,使用 Autodock Vina 软件对生物标志物及其相应的分子药物进行了分子对接:结果:通过筛选,我们发现了黄芪中的 20 种活性成分和 1 403 个靶基因。共筛选出 2 300 个差异表达基因和 3 035 个 CRC 中心基因。将目标基因与所发现的显著差异表达基因和枢纽基因整合后,共产生了 86 个 DTGs。随后,研究结果显示了 828 个富集的 GO 生物过程、184 个富集的 GO 分子功能、59 个富集的 GO 细胞组分和 46 个富集的 KEGG 通路。我们还获得了涉及 67 个节点的 143 对 PPI。此外,我们还构建了 45 个 mRNA-TF 对、101 个 miRNA-mRNA 对和 200 个 miRNA- mRNA-TF 三联体。最后,对活性成分槲皮素与 F2 和 UGT1A1 以及甲酸与 FGA、AHSG 和 KNG1 进行了分子对接:本研究确定了黄芪的活性成分及其在 CRC 中的相应靶点。这些发现为 CRC 患者的精准药物治疗提供了有力的证据。
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引用次数: 0
LNX1-AS2 as a Key Prognostic and Immunotherapy Response Biomarker for Lung Adenocarcinoma. LNX1-AS2是肺腺癌的关键预后和免疫疗法反应生物标记物
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-31 DOI: 10.2174/0109298673321029241015153958
Xiuxiu Wang, Guanzhong Yan, Xiaoying Zhang, Dongbing Li, Guangyi Li

Background: The role of LNX1 antisense RNA 2 (LNX1-AS2) in lung adenocarcinoma (LUAD) remains unclear.

Objective: This study aimed to investigate the association between LNX1-AS2 and LUAD by employing bioinformatics analysis and experimental validation.

Methods: Statistical analysis and database interrogation were utilized to assess correlations among LNX1-AS2 expression, clinical characteristics of LUAD patients, prognostic factors, regulatory networks, and immune infiltration. LNX1-AS2 expression in LUAD cell lines was quantified using quantitative real-time polymerase chain reaction (qRT-PCR).

Results: The study found significantly elevated levels of LNX1-AS2 expression in patients with LUAD. Furthermore, elevated LNX1-AS2 expression in LUAD patients did not significantly correlate with gender (p = 0.041) or race (p = 0.049). Importantly, high LNX1-AS2 expression levels were associated with poorer overall survival (OS, p = 0.042) and disease-specific survival (DSS, p = 0.040) in LUAD patients. Additionally, high LNX1-AS2 expression (p = 0.015) was independently correlated with OS in LUAD patients. The phenotype characterized by high LNX1-AS2 expression was also found to be enriched for asthma, allograft rejection, drug metabolism cytochrome P450, metabolism of xenobiotics by cytochrome P450, olfactory transduction, renin-angiotensin system, retinol metabolism, pentose and glucuronate interconversions, and porphyrin and chlorophyll metabolism. A significant correlation was identified between the expression levels of LNX1-AS2 and immune infiltration in the context of LUAD. Elevated expression of LNX1-AS2 was notably detected in LUAD cell lines as opposed to Beas-2B.

Conclusion: A noteworthy relationship was established among increased LNX1-AS2 expression in LUAD patients, unfavorable prognosis, and heightened immune infiltration. These findings suggest that the LNX1-AS2 gene could serve as a valuable prognostic indicator for LUAD and a potential predictor of response to immunotherapy.

背景:LNX1反义RNA 2(LNX1-AS2)在肺腺癌(LUAD)中的作用尚不清楚:LNX1反义RNA 2(LNX1-AS2)在肺腺癌(LUAD)中的作用仍不清楚:本研究旨在通过生物信息学分析和实验验证,研究 LNX1-AS2 与 LUAD 之间的关联:方法:利用统计分析和数据库查询评估LNX1-AS2表达、LUAD患者临床特征、预后因素、调控网络和免疫浸润之间的相关性。使用定量实时聚合酶链反应(qRT-PCR)对LUAD细胞系中LNX1-AS2的表达进行量化:结果:研究发现,LUAD 患者的 LNX1-AS2 表达水平明显升高。此外,LUAD 患者 LNX1-AS2 表达的升高与性别(p = 0.041)或种族(p = 0.049)无明显相关性。重要的是,LNX1-AS2的高表达水平与LUAD患者较差的总生存期(OS,p = 0.042)和疾病特异性生存期(DSS,p = 0.040)相关。此外,LNX1-AS2的高表达(p = 0.015)与LUAD患者的OS独立相关。以 LNX1-AS2 高表达为特征的表型还富集于哮喘、异体移植排斥反应、药物代谢细胞色素 P450、细胞色素 P450 对异种生物的代谢、嗅觉传导、肾素-血管紧张素系统、视黄醇代谢、戊糖和葡萄糖醛酸的相互转化以及卟啉和叶绿素代谢。研究发现,LNX1-AS2 的表达水平与 LUAD 的免疫浸润之间存在明显的相关性。与 Beas-2B 细胞系相比,LNX1-AS2 在 LUAD 细胞系中的表达明显升高:结论:LUAD 患者 LNX1-AS2 表达增加、预后不良和免疫浸润加剧之间存在显著关系。这些研究结果表明,LNX1-AS2 基因可作为 LUAD 有价值的预后指标,也是预测免疫疗法反应的潜在指标。
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引用次数: 0
Exosomal Delivery of miR-155 Inhibitor can Suppress Migration, Invasion, and Angiogenesis Via PTEN and DUSP14 in Triple-negative Breast Cancer. 外泌体输送 miR-155 抑制剂可通过 PTEN 和 DUSP14 抑制三阴性乳腺癌的迁移、侵袭和血管生成
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-31 DOI: 10.2174/0109298673341499241016110341
Javad Razaviyan, Majid Sirati-Sabet, Razie Hadavi, Saeed Karima, Masoumeh Rajabi Bazl, Samira Mohammadi-Yeganeh

Introduction: Triple-Negative Breast Cancer (TNBC) is the most common type of breast cancer (BC). In order to develop effective treatments for TNBC, it is vital to identify potential therapeutic targets. Angiogenesis stimulates tumor growth and metastasis in TNBC, and miR-155 plays a crucial role in this process. The exosome is a nano-sized vesicle that carries many cargoes, including miRNAs. The present study investigated the effect of exosomal delivery of miR-155 antagomir on tumor migration, invasion, and angiogenesis in TNBC.

Materials and methods: From MDA-MB-231 cells, exosomes were extracted, characterized, and loaded with miR-155 antagomir using electroporation. The expression of miR-155 and its target genes, including PTEN and DUSP14, was analyzed using RTqPCR. The wound-healing and transwell assays were used to measure cell migration and invasion. Furthermore, angiogenesis was evaluated by tube formation and chorioallantoic membrane (CAM) assays.

Results: The results indicated that exosomal delivery of miR-155 antagomir to HUVEC cells significantly suppressed miR-155 expression while upregulating PTEN and DUSP14. The tube formation properties of HUVEC cells were also significantly reduced following treatment with exosomes containing miR-155 antagomirs, and these results were confirmed using CAM assay. The migration and invasion of MDA-MB-231 cells were significantly reduced after treatment with miR-155 antagomir-loaded exosomes.

Conclusion: It was found that miR-155 antagomir delivery using exosomes can inhibit migration, invasion, and angiogenesis viaPTEN and DUSP14 in TNBC.

导言三阴性乳腺癌(TNBC)是最常见的乳腺癌(BC)类型。为了开发 TNBC 的有效治疗方法,确定潜在的治疗靶点至关重要。血管生成会刺激 TNBC 中肿瘤的生长和转移,而 miR-155 在这一过程中起着至关重要的作用。外泌体是一种纳米大小的囊泡,可携带多种货物,包括 miRNA。本研究探讨了外泌体递送 miR-155 antagomir 对 TNBC 肿瘤迁移、侵袭和血管生成的影响:从 MDA-MB-231 细胞中提取外泌体,对其进行表征,并使用电穿孔法装载 miR-155 antagomir。使用 RTqPCR 分析了 miR-155 及其靶基因(包括 PTEN 和 DUSP14)的表达。伤口愈合和跨孔试验用于测量细胞迁移和侵袭。此外,还通过管形成和绒毛膜(CAM)试验评估了血管生成:结果表明,向 HUVEC 细胞外泌体递送 miR-155 antagomir 能显著抑制 miR-155 的表达,同时上调 PTEN 和 DUSP14。用含有 miR-155 antagomirs 的外泌体处理 HUVEC 细胞后,其管形成特性也明显降低,这些结果在 CAM 试验中得到了证实。用含有 miR-155 抗配体的外泌体处理后,MDA-MB-231 细胞的迁移和侵袭能力显著降低:结论:研究发现,利用外泌体递送miR-155抗配体可以通过PTEN和DUSP14抑制TNBC细胞的迁移、侵袭和血管生成。
{"title":"Exosomal Delivery of miR-155 Inhibitor can Suppress Migration, Invasion, and Angiogenesis Via PTEN and DUSP14 in Triple-negative Breast Cancer.","authors":"Javad Razaviyan, Majid Sirati-Sabet, Razie Hadavi, Saeed Karima, Masoumeh Rajabi Bazl, Samira Mohammadi-Yeganeh","doi":"10.2174/0109298673341499241016110341","DOIUrl":"https://doi.org/10.2174/0109298673341499241016110341","url":null,"abstract":"<p><strong>Introduction: </strong>Triple-Negative Breast Cancer (TNBC) is the most common type of breast cancer (BC). In order to develop effective treatments for TNBC, it is vital to identify potential therapeutic targets. Angiogenesis stimulates tumor growth and metastasis in TNBC, and miR-155 plays a crucial role in this process. The exosome is a nano-sized vesicle that carries many cargoes, including miRNAs. The present study investigated the effect of exosomal delivery of miR-155 antagomir on tumor migration, invasion, and angiogenesis in TNBC.</p><p><strong>Materials and methods: </strong>From MDA-MB-231 cells, exosomes were extracted, characterized, and loaded with miR-155 antagomir using electroporation. The expression of miR-155 and its target genes, including PTEN and DUSP14, was analyzed using RTqPCR. The wound-healing and transwell assays were used to measure cell migration and invasion. Furthermore, angiogenesis was evaluated by tube formation and chorioallantoic membrane (CAM) assays.</p><p><strong>Results: </strong>The results indicated that exosomal delivery of miR-155 antagomir to HUVEC cells significantly suppressed miR-155 expression while upregulating PTEN and DUSP14. The tube formation properties of HUVEC cells were also significantly reduced following treatment with exosomes containing miR-155 antagomirs, and these results were confirmed using CAM assay. The migration and invasion of MDA-MB-231 cells were significantly reduced after treatment with miR-155 antagomir-loaded exosomes.</p><p><strong>Conclusion: </strong>It was found that miR-155 antagomir delivery using exosomes can inhibit migration, invasion, and angiogenesis viaPTEN and DUSP14 in TNBC.</p>","PeriodicalId":10984,"journal":{"name":"Current medicinal chemistry","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142557370","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
TLR2 Activation as a Marker of Severe COVID-19 and a Potential Therapeutic Target. TLR2 激活是严重 COVID-19 的标记和潜在治疗靶点。
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-31 DOI: 10.2174/0109298673327301241016063917
Xianxian Mao, Yijia Wu, Xinyi Zhang, Tian Zhou, Houda Huang, Mingui Fu, Yisong Qian

SARS-CoV-2-induced COVID-19 has been a serious public health problem, resulting in millions of lives lost over the previous three years. Although the direct infection caused by virus invasion is important for the pathobiology of COVID-19, the hyperinflammatory response and tissue injury are major contributors in critically ill patients. As a host sensor, toll-like receptor 2 (TLR2) recognizes multiple pathogen-associated molecular patterns (PAMPs) or damage-associated molecular patterns (DAMPs), producing various inflammatory cytokines and inflammatory cell death signals, which are central to the inflammatory pathology observed in COVID-19. The objectives of this narrative review are to summarize the role of TLR2 activation during SARS-CoV-2 infection and emphasize the importance of SARS-CoV-2 viral proteins in TLR2 activation. Additionally, we presented some compounds related to TLR2 regulation clinically or experimentally, which may provide new insights into targets for pharmaceutical discovery and development.

由 SARS-CoV-2 引发的 COVID-19 一直是一个严重的公共卫生问题,在过去三年中导致数百万人丧生。虽然病毒入侵造成的直接感染对 COVID-19 的病理生物学非常重要,但在重症患者中,高炎症反应和组织损伤也是主要的致病因素。作为宿主传感器,类收费受体 2(TLR2)可识别多种病原体相关分子模式(PAMPs)或损伤相关分子模式(DAMPs),产生各种炎症细胞因子和炎症细胞死亡信号,这是 COVID-19 中观察到的炎症病理学的核心。本综述旨在总结 TLR2 在 SARS-CoV-2 感染过程中的激活作用,并强调 SARS-CoV-2 病毒蛋白在 TLR2 激活过程中的重要性。此外,我们还介绍了临床或实验中与 TLR2 调节有关的一些化合物,这些化合物可能为药物发现和开发的靶点提供新的见解。
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引用次数: 0
Diagnostic Potential of NEAT1, hsa-let-7a-5p, and miR-506-3p in Early-stage Parkinson's Disease. NEAT1、hsa-let-7a-5p 和 miR-506-3p 在早期帕金森病中的诊断潜力
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-31 DOI: 10.2174/0109298673336756241016063552
Ali Samareh, Mohammad Hadi Nematollahi, Hossein Pourghadamyari, Hossein Ali Ebrahimi Meimand, Mohammad Shabani, Gholamreza Asadikaram

Background: Parkinson's disease (PD) is a multifaceted disease that is influenced by both genetic and environmental parameters. Non-coding RNAs have been shown to be ideal biomarkers for several diseases, including PD. This study was conducted to evaluate the expression levels of NEAT1, hsa-let-7a-5p, and miR-506-3p in individuals with PD to assess their efficacy for early-stage PD diagnosis.

Methods: Twenty-four patients with PD and 29 healthy individuals participated in this study. The IntaRNA tool was used to predict potential base pairings between NEAT1 and let-7a-5p, and NEAT1 and miR-506-3p. RT-qPCR was employed to measure the relative expression of tyrosine hydroxylase (TH), as well as nuclear enriched abundant transcript 1 (NEAT1), hsa-let-7a-5p, and miR-506-3p levels in both groups. The area under the receiver operating characteristic curve (AUC) was calculated to evaluate the diagnostic value.

Results: The PD group exhibited significantly elevated NEAT1 expression levels compared to the healthy control group. While the PD group exhibited an insignificant decreased TH expression level relative to the healthy group. Furthermore, the levels of hsa-let-7a-5p and miR-506-3p expression were seen to be decreased in patients with PD in comparison to the control group. Integration of NEAT1, hsa-let-7a-5p, and miR-506-3p levels significantly enhanced diagnostic capabilities and increased the AUC to 0.9501 (95% confidence interval: 0.8978-1.000, p < .0001).

Conclusions: The elevated NEAT1 expression and the decreased expression of hsalet- 7a-5p and miR-506-3p in PD patients indicate that these factors might contribute to the disease's pathogenesis. Combining the ROC curves of NEAT1 and hsa-let-7a-5p with miR-506-3p showed improved sensitivity and specificity, facilitating more accurate PD diagnosis. More importantly, they may contribute as promising non-invasive biomarkers for PD diagnosis.

背景:帕金森病(PD)是一种受遗传和环境因素影响的多发性疾病。非编码 RNA 已被证明是包括帕金森病在内的多种疾病的理想生物标志物。本研究旨在评估NEAT1、hsa-let-7a-5p和miR-506-3p在帕金森病患者中的表达水平,以评估它们对早期帕金森病诊断的有效性:24名帕金森病患者和29名健康人参与了这项研究。使用 IntaRNA 工具预测 NEAT1 和 let-7a-5p 以及 NEAT1 和 miR-506-3p 之间的潜在碱基配对。采用 RT-qPCR 方法测量两组中酪氨酸羟化酶(TH)、核富集丰富转录本 1(NEAT1)、hsa-let-7a-5p 和 miR-506-3p 水平的相对表达。计算接收者操作特征曲线下面积(AUC)以评估诊断价值:结果:与健康对照组相比,帕金森病组的 NEAT1 表达水平明显升高。与健康对照组相比,PD 组的 TH 表达水平下降不明显。此外,与对照组相比,帕金森病患者的 hsa-let-7a-5p 和 miR-506-3p 表达水平有所下降。整合NEAT1、hsa-let-7a-5p和miR-506-3p水平可显著提高诊断能力,并将AUC提高到0.9501(95%置信区间:0.8978-1.000,p < .0001):结论:在帕金森病患者中,NEAT1表达升高,hsalet- 7a-5p和miR-506-3p表达降低,这表明这些因素可能有助于该病的发病机制。将NEAT1和hsa-let-7a-5p与miR-506-3p的ROC曲线相结合,可提高灵敏度和特异性,有助于更准确地诊断帕金森病。更重要的是,它们可能成为诊断帕金森病的有前途的非侵入性生物标记物。
{"title":"Diagnostic Potential of NEAT1, hsa-let-7a-5p, and miR-506-3p in Early-stage Parkinson's Disease.","authors":"Ali Samareh, Mohammad Hadi Nematollahi, Hossein Pourghadamyari, Hossein Ali Ebrahimi Meimand, Mohammad Shabani, Gholamreza Asadikaram","doi":"10.2174/0109298673336756241016063552","DOIUrl":"https://doi.org/10.2174/0109298673336756241016063552","url":null,"abstract":"<p><strong>Background: </strong>Parkinson's disease (PD) is a multifaceted disease that is influenced by both genetic and environmental parameters. Non-coding RNAs have been shown to be ideal biomarkers for several diseases, including PD. This study was conducted to evaluate the expression levels of NEAT1, hsa-let-7a-5p, and miR-506-3p in individuals with PD to assess their efficacy for early-stage PD diagnosis.</p><p><strong>Methods: </strong>Twenty-four patients with PD and 29 healthy individuals participated in this study. The IntaRNA tool was used to predict potential base pairings between NEAT1 and let-7a-5p, and NEAT1 and miR-506-3p. RT-qPCR was employed to measure the relative expression of tyrosine hydroxylase (TH), as well as nuclear enriched abundant transcript 1 (NEAT1), hsa-let-7a-5p, and miR-506-3p levels in both groups. The area under the receiver operating characteristic curve (AUC) was calculated to evaluate the diagnostic value.</p><p><strong>Results: </strong>The PD group exhibited significantly elevated NEAT1 expression levels compared to the healthy control group. While the PD group exhibited an insignificant decreased TH expression level relative to the healthy group. Furthermore, the levels of hsa-let-7a-5p and miR-506-3p expression were seen to be decreased in patients with PD in comparison to the control group. Integration of NEAT1, hsa-let-7a-5p, and miR-506-3p levels significantly enhanced diagnostic capabilities and increased the AUC to 0.9501 (95% confidence interval: 0.8978-1.000, p < .0001).</p><p><strong>Conclusions: </strong>The elevated NEAT1 expression and the decreased expression of hsalet- 7a-5p and miR-506-3p in PD patients indicate that these factors might contribute to the disease's pathogenesis. Combining the ROC curves of NEAT1 and hsa-let-7a-5p with miR-506-3p showed improved sensitivity and specificity, facilitating more accurate PD diagnosis. More importantly, they may contribute as promising non-invasive biomarkers for PD diagnosis.</p>","PeriodicalId":10984,"journal":{"name":"Current medicinal chemistry","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142557368","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome-wide Association Studies of Diabetic Kidney Disease in East Asians With Type 2 Diabetes: Achievements and Future Perspectives. 东亚 2 型糖尿病患者糖尿病肾病的全基因组关联研究:成就与未来展望》。
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-31 DOI: 10.2174/0109298673328801241015165257
Binura Taurbekova, Kymbat Mukhtarova, Zhandos Salpynov, Joseph Almazan, Kuralay Atageldiyeva, Antonio Sarria-Santamera

Diabetic kidney disease is a devastating diabetic complication, affecting up to half of people suffering from diabetes. The global burden of diabetic kidney disease is steadily increasing worldwide along with the growing prevalence of type 2 diabetes. The epidemic rise of type 2 diabetes is primarily observed in Asia, including the East Asian regions. It is generally accepted that heredity is one of the main determinants in the pathogenesis of diabetic kidney disease. Since the advent of genome-wide association studies, numerous studies have been published to identify the genetic loci susceptible to diabetic kidney disease among diverse populations. Although genome-wide association studies exploring diabetic kidney disease susceptibility loci have focused primarily on populations of European descent, a number of novel genetic variants associated with diabetic kidney disease have also been successfully revealed among East Asians. A comprehensive analysis of the genetic architecture and pathophysiological pathways of diabetic kidney disease may allow the identification of new potential therapeutic targets. This review aimed to summarize genome-wide association studies examining genetic variants associated with diabetic kidney disease in the populations of East Asian ancestry with type 2 diabetes and presented our perspective on the future of this field.

糖尿病肾病是一种破坏性的糖尿病并发症,多达一半的糖尿病患者会受到影响。随着 2 型糖尿病患病率的不断上升,糖尿病肾病给全球带来的负担也在稳步加重。2 型糖尿病的流行主要发生在亚洲,包括东亚地区。人们普遍认为,遗传是糖尿病肾病发病机制的主要决定因素之一。自全基因组关联研究问世以来,已有大量研究发表,以确定不同人群中易患糖尿病肾病的基因位点。尽管探索糖尿病肾病易感基因位点的全基因组关联研究主要集中在欧洲后裔人群中,但在东亚人中也成功发现了一些与糖尿病肾病相关的新型基因变异。对糖尿病肾病的遗传结构和病理生理途径进行全面分析,有助于确定新的潜在治疗靶点。本综述旨在总结在东亚血统的2型糖尿病患者中开展的与糖尿病肾病相关的全基因组关联研究,并展望这一领域的未来。
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引用次数: 0
Developing Generalizable Scoring Functions for Molecular Docking: Challenges and Perspectives. 为分子对接开发可通用的评分函数:挑战与展望
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-30 DOI: 10.2174/0109298673334469241017053508
Rodrigo Quiroga, Marcos Villarreal

Structure-based drug discovery methods, such as molecular docking and virtual screening, have become invaluable tools in developing novel drugs. At the core of these methods are Scoring Functions (SFs), which predict the binding affinity between ligands and protein targets. This study aims to review and contextualize the challenges and best practices in training novel scoring functions to improve their accuracy and generalizability in predicting protein-ligand binding affinities. Effective training of scoring functions requires careful attention to the quality of training data and methodologies. We emphasize the need for robust training strategies to produce consistent and generalizable SFs. Key considerations include addressing hidden biases and overfitting in machine-learning models, as well as ensuring the use of high-quality, unbiased datasets for both training and evaluation of SFs. Innovative hybrid methods, combining the advantages of empirical and machine-learning approaches, hold promise for outperforming current scoring functions while displaying greater generalizability and versatility.

基于结构的药物发现方法,如分子对接和虚拟筛选,已成为开发新型药物的宝贵工具。这些方法的核心是预测配体与蛋白质靶标之间结合亲和力的评分函数(SFs)。本研究旨在回顾和总结训练新型评分函数的挑战和最佳实践,以提高它们在预测蛋白质配体结合亲和力方面的准确性和通用性。要有效地训练评分函数,需要仔细关注训练数据和方法的质量。我们强调需要采用稳健的训练策略,以产生一致且可推广的 SF。主要考虑因素包括解决机器学习模型中的隐藏偏差和过度拟合问题,以及确保使用高质量、无偏见的数据集来训练和评估 SFs。创新的混合方法结合了经验方法和机器学习方法的优势,有望超越当前的评分函数,同时显示出更强的普适性和通用性。
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引用次数: 0
The Role of Inflammatory Biomarkers in the Pre-Biopsy Risk Stratification of Patients with Suspicious Mri Lesions of the Prostate: Where Should We Head? 炎症生物标志物在前列腺可疑 Mri 病变患者活检前风险分层中的作用:我们该何去何从?
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-29 DOI: 10.2174/0109298673344979241014114336
Ilias Giannakodimos, Napoleon Moulavasilis, Konstantinos Stravodimos, Evaggelos Fragkiadis
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引用次数: 0
期刊
Current medicinal chemistry
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