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Anticancer Drug Discovery from Natural Compounds Targeting PI3K/AKT/mTOR Signaling Pathway. 从靶向 PI3K/AKT/mTOR 信号通路的天然化合物中发现抗癌药物。
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-10 DOI: 10.2174/0109298673325229240928040758
Manuele Figueiredo da Silva, Arestides Alves Lins, Midiane Correia Gomes, Washley Phyama de Jesus Marinho, Rodrigo Santos Aquino de Araújo, Ricardo Olimpio de Moura, Peng Zhan, Igor José Dos Santos Nascimento, Edeildo Ferreira da Silva-Júnior

The term cancer is used to describe a complex pathology characterized by the uncontrollable proliferation of cells, which displays a fast metastatic spread, being a disease with difficult treatment. In this context, Phosphatidylinositol 3-kinase (PI3K) represents a promising pathway to be inhibited, aiming to develop anticancer agents, since it performs a pivotal role in regulating essential cellular processes, including cell proliferation, growth, autophagy, and apoptosis. In parallel, natural compounds can effectively represent a therapeutic strategy to fight against malignant cells. Then, compounds derived from various plant sources, such as flavonoids, terpenoids, alkaloids, coumarins, and lignans, have exhibited remarkable in vitro and in vivo anticancer properties. This review focused in the exploration of natural products targeting the PI3K/AKT/m-TOR signaling pathway, demonstrating that these compounds could even further investigated to reveal novel and effective anticancer drugs in the future.

癌症是一种复杂的病理现象,其特点是细胞无法控制地增殖,并迅速转移扩散,是一种难以治疗的疾病。在这种情况下,磷脂酰肌醇 3- 激酶(PI3K)是一种有希望被抑制的途径,旨在开发抗癌药物,因为它在调节细胞增殖、生长、自噬和凋亡等重要细胞过程中发挥着关键作用。与此同时,天然化合物可以有效地代表一种对抗恶性细胞的治疗策略。从各种植物中提取的化合物,如黄酮类、萜类、生物碱、香豆素和木脂素等,在体外和体内均表现出显著的抗癌特性。这篇综述重点探讨了以 PI3K/AKT/m-TOR 信号通路为靶点的天然产物,表明这些化合物甚至可以在未来进一步研究,以揭示新型有效的抗癌药物。
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引用次数: 0
Multi-Target Mechanisms of Si-Ni-San on Anxious Insomnia: An Example of Network-pharmacology and Molecular Docking Analysis. 四氮散治疗焦虑性失眠的多靶点机制:网络药理学和分子对接分析实例。
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-09 DOI: 10.2174/0109298673299665240924090617
Chih Ting Lin, Hsin Yi Lin, Wen Huang Peng, Lung Yuan Wu
<p><strong>Background and objective: </strong>Based on comprehensive network-pharmacology and molecular docking analysis, this study was intended to unveil the multiple mechanisms of Si-Ni-San (SNS) in treating anxious insomnia.</p><p><strong>Methods: </strong>The compounds of SNS were meticulously analyzed, selected and standardized with references to their pharmacological attributes. The components included chaihu (Bupleurum chinense DC.), baishao (Paeonia lactiflora Pall.), zhishi (Citrus aurantium L.) and gancao (Glycyrrhiza uralensis Fisch. ex DC.). We used the Traditional Chinese Medicine System Pharmacology (TCMSP) Database, Traditional Chinese Medicines Integrated Database (TCMID), GeneCards database, therapeutic target database (TTD) and comparative toxicogenomic database (CTD) to construct the components-compounds-targets networks and used Cytoscape 3.9.1 software to visualize the outcome. Afterwards, the STRING database and Cytoscape 3.9.1 software were utilized to construct and visualize the protein-protein interaction (PPI) network analysis. In addition, the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis were also conducted through the Database for Annotation, Visualization, and Integrated Discovery (DAVID). The molecular docking program was carried out using AutoDock 4.2 software to understand interactions between target receptors and compound ligands selected for study.</p><p><strong>Results: </strong>We thoroughly sorted and filtered 31 pharmacologically active compounds from SNS. Subsequently, several potential target genes were predicted, of which there were 59 target genes distinctly associated with anxious insomnia. The PPI analysis indicated that the core target proteins included AKT1, IL6, TNF, SLC6A4, MAOA and GABRA2. The results of our study indicated that SNS potentially remediates anxious insomnia by reducing inflammation, neurodegeneration, and cell apoptosis of neurons. In addition, GO and KEGG enrichment analysis results indicated that SNS could modulate multiple aspects of anxious insomnia through mechanisms related to pathways of neuroactive ligand-receptor interaction. These pathways include various kinds of synaptic transmission pathways, and anti-inflammatory activity associated with response pathways. When we compared the components-compounds-targets networks and the compounds-targets-synaptic pathways networks, the five active compounds, including beta-Sitosterol, Kaempferol, Tetramethoxyluteolin, Isorhamnetin and Shinpterocarpin, were selected to conduct molecular docking experiments. Eleven target proteins, (AKT1, SLC6A4, ADRB2, MAOA, ACHE, ESR1, CYP3A4, CHRNA7, GABRA2, HTR2A and NOS3), which also play significant roles in regulating serotonergic, cholinergic, dopaminergic and GABAergic systems in the PPI network, were selected to act as receptors in molecular docking trials. The results showed that docking pairs isorhamnetin-AKT1, isorhamnetin-SLC6A4, β-sito
背景和目的:基于网络药理学和分子对接分析,本研究旨在揭示四氮散(SNS)治疗焦虑性失眠的多重机制:方法:对 "四逆散 "的化合物进行了细致的分析、筛选和标准化,并参考了其药理属性。这些成分包括柴胡、白芍、枳壳和甘草。我们利用中药系统药理学数据库(TCMSP)、中药综合数据库(TCMID)、GeneCards数据库、治疗靶点数据库(TTD)和比较毒物基因组学数据库(CTD)构建了成分-化合物-靶点网络,并使用Cytoscape 3.9.1软件对结果进行了可视化。随后,利用 STRING 数据库和 Cytoscape 3.9.1 软件构建了蛋白质-蛋白质相互作用(PPI)网络,并将其可视化。此外,还通过注释、可视化和综合发现数据库(DAVID)进行了基因本体(GO)和京都基因组百科全书(KEGG)通路富集分析。使用 AutoDock 4.2 软件进行了分子对接程序,以了解目标受体与所选化合物配体之间的相互作用:我们对 SNS 中的 31 种药理活性化合物进行了彻底分类和筛选。结果:我们对 SNS 中的 31 种药理活性化合物进行了彻底的分类和筛选,随后预测出了几个潜在的靶基因,其中有 59 个靶基因与焦虑性失眠明显相关。PPI分析表明,核心靶蛋白包括AKT1、IL6、TNF、SLC6A4、MAOA和GABRA2。我们的研究结果表明,SNS 可通过减少炎症、神经变性和神经元细胞凋亡来缓解焦虑性失眠。此外,GO 和 KEGG 富集分析结果表明,SNS 可通过与神经活性配体-受体相互作用途径相关的机制调节焦虑性失眠症的多个方面。这些途径包括各种突触传递途径以及与反应途径相关的抗炎活性。在比较 "成分-化合物-靶标 "网络和 "化合物-靶标-突触通路 "网络时,我们选择了β-谷甾醇、堪非醇、四甲氧基木犀草素、异鼠李素和辛柚素等五个活性化合物进行分子对接实验。在分子对接实验中,选择了 11 个靶蛋白(AKT1、SLC6A4、ADRB2、MAOA、ACHE、ESR1、CYP3A4、CHRNA7、GABRA2、HTR2A 和 NOS3)作为受体,它们在 PPI 网络中对 5-羟色胺能、胆碱能、多巴胺能和 GABA 能系统也起着重要的调节作用。结果表明,异鼠李素-AKT1、异鼠李素-SLC6A4、β-谷甾醇-MAOA、β-谷甾醇-ACE、异鼠李素-CHRNA7和shinpterocarpin-GABRA2等对接配对提供了关键化合物与SNS核心靶蛋白之间配体-受体结合的最稳定构象:本研究提供了一个计算结果,揭示了SNS可通过 "多化合物、多靶点和多途径 "机制缓解与焦虑相关的睡眠障碍。网络药理学和分子对接结果从理论上证实了 SNS 的抗焦虑和抗失眠作用。虽然这项研究纯粹是统计性和系统性的,没有经过经验验证,但它可以作为后续实验研究的垫脚石和基石。
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引用次数: 0
Role of Ferroptosis in ALD: Focusing on Hepcidin and Besides Hepcidin. 铁蛋白沉积在 ALD 中的作用:关注肝素和肝素以外的其他蛋白。
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-09 DOI: 10.2174/0109298673317526240924050651
Leijie Chen, Hejun Zhou, Zongyong Cheng, Deliang Liu, Yuyong Tan

Ascending incidence and poor outcomes make Alcoholic Liver Disease (ALD) a considerable public health concern. This review concluded the iron metabolism under physiology conditions and alcohol disturbance (leading to ferroptosis in ALD) and summarized the novel treatment, diagnosis, and prognosis of ferroptosis for ALD. ALD is characterized by alcohol-induced chronic metabolism disorder, peroxidation damage, and dysfunction of the anti-oxidant system. Current animal experiments and clinical studies identified ferroptosis as a new form of regulated cell death involved in ALD. One strong evidence is that the key iron regulatory hormone, hepcidin, is downgraded in ALD through NF-κB/IL-6/STAT3, BMP/SMAD, and Jak/STAT3 pathways, which would impair iron hemostasis and induce ferroptosis in ALD. Also, imbalance metabolism and other pathological responses in ALD induce and regulate ferroptosis, which proves ferroptosis participates in the pathophysiology of ALD via oxidative stress, steatosis, and fibrosis. Inhibition of ferroptosis via regulating hepcidin expression and metabolism impairment may provide new therapies for ALD.

酒精性肝病(ALD)的发病率不断上升,且治疗效果不佳,是一个相当令人担忧的公共卫生问题。本综述总结了生理条件下的铁代谢和酒精干扰(导致 ALD 中的铁变态反应),并总结了 ALD 中铁变态反应的新型治疗、诊断和预后。ALD 的特点是酒精引起的慢性代谢紊乱、过氧化损伤和抗氧化系统功能失调。目前的动物实验和临床研究发现,铁蜕变是参与 ALD 的一种新的调节性细胞死亡形式。一个有力的证据是,在 ALD 中,关键的铁调节激素血钙素通过 NF-κB/IL-6/STAT3、BMP/SMAD 和 Jak/STAT3 通路被降级,这将损害铁的止血作用并诱导 ALD 中的铁细胞凋亡。此外,新陈代谢失衡和 ALD 的其他病理反应也会诱导和调节铁变态反应,这证明铁变态反应通过氧化应激、脂肪变性和纤维化参与了 ALD 的病理生理学。通过调节血红素的表达和代谢障碍来抑制铁蛋白沉积,可能会为 ALD 提供新的疗法。
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引用次数: 0
Lipidomics in Periodontal Disease Research: A Systematic Review. 牙周病研究中的脂质组学:系统综述
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-08 DOI: 10.2174/0109298673323591240923051742
Carolina Silva, Francisco Peixoto, Isabel Dias, Rosário Domingues, Carlos Viegas

Introduction/objective: Periodontal disease is a highly prevalent oral pathology in the human population, which has a significant local and systemic impact. Currently, multi-omics analyses, including lipidomics, are fundamental to obtaining an in-depth molecular understanding of the individual. Lipidomics is dedicated to the study of lipid species and their interactions in various health contexts. This specific multi-omics analysis is important for understanding the alteration of metabolism and signaling in disease, identifying biochemical markers, and potential therapeutic targets. This study aimed to carry out a systematic review of the existing scientific literature on lipidomics in periodontal disease and thus determine which molecules have already been analyzed and their potential in this specific disease.

Methods: This study followed the recommendations of the PRISMA 2020 methodology. The inclusion criteria used were articles published in indexed journals between 2000 and 2023, written in English, and establishing an exclusive relationship about lipidomics in human periodontal disease. The articles were searched in three different databases.

Results: Considering the criteria defined, only six articles were selected and zed individually in detail. In four of the six studies, differences in the lipidome of individuals with periodontal disease were identified. Furthermore, phosphoethanolamine ceramide was found to have potential as a diagnostic biomarker. Finally, the therapeutic potential of a lipoxin A4 analogue was also identified.

Conclusion: These results reinforce the need for future research in this area so that the consequences of this disease on the lipidome can be identified.

导言/目的:牙周病是人类高发的口腔疾病,对局部和全身都有重大影响。目前,包括脂质组学在内的多组学分析是深入了解个体分子情况的基础。脂质组学致力于研究脂质物种及其在各种健康状况下的相互作用。这种特定的多组学分析对于了解疾病中代谢和信号的改变、确定生化标志物和潜在的治疗靶点非常重要。本研究旨在对现有关于牙周病脂质组学的科学文献进行系统回顾,从而确定哪些分子已被分析,以及它们在这种特定疾病中的潜力:本研究遵循 PRISMA 2020 方法的建议。纳入标准为 2000 年至 2023 年期间发表在索引期刊上的文章,以英语撰写,并建立了关于人类牙周病脂质组学的排他性关系。文章在三个不同的数据库中进行了检索:结果:根据所定义的标准,只有六篇文章被选中并逐一进行了详细研究。在这六篇研究中,有四篇发现了牙周病患者脂质体的差异。此外,研究还发现磷脂酰乙醇胺神经酰胺具有作为诊断生物标志物的潜力。最后,还发现了一种脂质毒素 A4 类似物的治疗潜力:这些结果加强了今后在这一领域开展研究的必要性,以便确定这种疾病对脂质体的影响。
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引用次数: 0
Unveiling the Power of Mitochondrial Fission and Fusion: A Five-Gene Signature for Personalized Prognosis in Gastric Cancer. 揭示线粒体分裂和融合的力量:用于胃癌个性化预后的五基因特征。
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-08 DOI: 10.2174/0109298673339515240930053412
Bin Zhou, Ping Tie, Dongbing Li, You Lu, Yuanhua Liu

Background: Mitochondrial fission and fusion play important roles in tumorigenesis, progression and therapy. Dysregulation of these processes may lead to tumor progression, and regulation of these processes may provide novel strategies for cancer therapy. The involvement of genes related to mitochondrial fission and fusion (MD) in gastric cancer (GC) remains poorly understood.

Objective: The aim of this study was to establish an MD gene signature for GC patients and to investigate its association with prognosis, tumor microenvironment and treatment response in GC.

Methods: We use the TCGA-GC database as the cohort, focusing specifically on genes associated with MD. We conducted identification and consistency clustering analysis of differentially expressed genes in MD, conducted MD gene mutation and copy number variation analysis, as well as correlation and functional enrichment analysis between MD gene cluster classification and immune infiltration. TCGA-GC and GSE15459 were used to construct training and validation cohorts for the model. We used various statistical methods, including Cox and Lasso regression, to develop the model. We validated the model using bulk transcriptome and single- cell transcriptome datasets (GSE13861, GSE26901, GSE66229, and GSE13450). We used GSEA enrichment, CIBERSORT algorithm, ESTIMATE, and TIDE to gain insight into the annotation of MD signature and the characterization of the tumor microenvironment. OncoPredict was used to analyze the relationship between the PRG signature and the drug sensitivity. We validated the expression of several key genes in MD signature on GC cell lines using quantitative real-time PCR (qRT-PCR).

Results: These MDs-related subtypes exhibited different prognosis and immune filtration patterns. A five-gene signature, comprising AGT, HCFC1, KIFC3, NOX4, and RIN1, was developed. There was a clear distinction in overall survival between low- and high-risk patients. The analyses showed further confirmation of the independent prognostic value of the gene signature. There was a notable correlation between the MD signature, immune infiltration and drug susceptibility. The expression levels of AGT, HCFC1, KIFC3, NOX4 and RIN1 mRNA were all increased in these GC cells.

Conclusion: The MD signature has the capacity to significantly contribute to the prediction of personalized outcomes and the advancement of novel therapeutic strategies tailored for GC patients.

背景:线粒体分裂和融合在肿瘤发生、发展和治疗中发挥着重要作用。这些过程的失调可能导致肿瘤进展,而对这些过程的调控可能为癌症治疗提供新的策略。与线粒体分裂和融合(MD)相关的基因参与胃癌(GC)的情况仍不甚明了:本研究旨在建立胃癌患者的线粒体分裂和融合基因特征,并研究其与胃癌预后、肿瘤微环境和治疗反应的关系:我们以 TCGA-GC 数据库为队列,特别关注与 MD 相关的基因。我们对MD中差异表达基因进行了鉴定和一致性聚类分析,进行了MD基因突变和拷贝数变异分析,以及MD基因簇分类与免疫浸润之间的相关性和功能富集分析。TCGA-GC 和 GSE15459 被用来构建模型的训练队列和验证队列。我们使用了多种统计方法,包括 Cox 回归和 Lasso 回归,来建立模型。我们使用批量转录组和单细胞转录组数据集(GSE13861、GSE26901、GSE66229 和 GSE13450)验证了模型。我们使用了GSEA富集、CIBERSORT算法、ESTIMATE和TIDE来深入了解MD特征的注释和肿瘤微环境的特征。我们使用 OncoPredict 分析了 PRG 特征与药物敏感性之间的关系。我们使用定量实时 PCR(qRT-PCR)技术验证了 GC 细胞系中 MD 特征中几个关键基因的表达:结果:这些与MD相关的亚型表现出不同的预后和免疫过滤模式。由 AGT、HCFC1、KIFC3、NOX4 和 RIN1 组成的五个基因特征被开发出来。低危和高危患者的总生存率有明显区别。分析表明,基因特征的独立预后价值得到了进一步证实。MD特征、免疫浸润和药物敏感性之间存在明显的相关性。AGT、HCFC1、KIFC3、NOX4和RIN1 mRNA的表达水平在这些GC细胞中均有所增加:结论:MD特征能够极大地促进个性化结果的预测,并推动为GC患者量身定制的新型治疗策略。
{"title":"Unveiling the Power of Mitochondrial Fission and Fusion: A Five-Gene Signature for Personalized Prognosis in Gastric Cancer.","authors":"Bin Zhou, Ping Tie, Dongbing Li, You Lu, Yuanhua Liu","doi":"10.2174/0109298673339515240930053412","DOIUrl":"https://doi.org/10.2174/0109298673339515240930053412","url":null,"abstract":"<p><strong>Background: </strong>Mitochondrial fission and fusion play important roles in tumorigenesis, progression and therapy. Dysregulation of these processes may lead to tumor progression, and regulation of these processes may provide novel strategies for cancer therapy. The involvement of genes related to mitochondrial fission and fusion (MD) in gastric cancer (GC) remains poorly understood.</p><p><strong>Objective: </strong>The aim of this study was to establish an MD gene signature for GC patients and to investigate its association with prognosis, tumor microenvironment and treatment response in GC.</p><p><strong>Methods: </strong>We use the TCGA-GC database as the cohort, focusing specifically on genes associated with MD. We conducted identification and consistency clustering analysis of differentially expressed genes in MD, conducted MD gene mutation and copy number variation analysis, as well as correlation and functional enrichment analysis between MD gene cluster classification and immune infiltration. TCGA-GC and GSE15459 were used to construct training and validation cohorts for the model. We used various statistical methods, including Cox and Lasso regression, to develop the model. We validated the model using bulk transcriptome and single- cell transcriptome datasets (GSE13861, GSE26901, GSE66229, and GSE13450). We used GSEA enrichment, CIBERSORT algorithm, ESTIMATE, and TIDE to gain insight into the annotation of MD signature and the characterization of the tumor microenvironment. OncoPredict was used to analyze the relationship between the PRG signature and the drug sensitivity. We validated the expression of several key genes in MD signature on GC cell lines using quantitative real-time PCR (qRT-PCR).</p><p><strong>Results: </strong>These MDs-related subtypes exhibited different prognosis and immune filtration patterns. A five-gene signature, comprising AGT, HCFC1, KIFC3, NOX4, and RIN1, was developed. There was a clear distinction in overall survival between low- and high-risk patients. The analyses showed further confirmation of the independent prognostic value of the gene signature. There was a notable correlation between the MD signature, immune infiltration and drug susceptibility. The expression levels of AGT, HCFC1, KIFC3, NOX4 and RIN1 mRNA were all increased in these GC cells.</p><p><strong>Conclusion: </strong>The MD signature has the capacity to significantly contribute to the prediction of personalized outcomes and the advancement of novel therapeutic strategies tailored for GC patients.</p>","PeriodicalId":10984,"journal":{"name":"Current medicinal chemistry","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142388781","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of a Mitochondrial Membrane Permeability Transition Prognosis System in Colon Adenocarcinoma: Risk Stratification and Therapeutic Target Identification. 开发结肠腺癌线粒体膜渗透性转换预后系统:风险分层和治疗目标的确定。
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-07 DOI: 10.2174/0109298673335900240920070746
Bomiao Zhang, Mingyu Xia, Shihui Zhao, Yien Li, Chenfeng Yu, Liqiang Song, Shaoke Wang, Binbin Cui

Aims: Explore the role of mitochondrial membrane permeability transition (MPT) in colon adenocarcinoma (COAD).

Background: Further exploration of risk stratification for COAD prognostic assessment has important clinical value. MPT-related pathways play a key role in the pathogenesis of many human diseases, including tumorigenesis. Its impact on COAD is still unknown.

Objective: Bioinformatics analysis was conducted by analyzing the GEO database and TCGA database, and the bioinformatics results were verified by in vitro experiments.

Method: Through the analysis of the transcriptome data of 1008 COAD samples in the GEO database and TCGA database, the differential expressions of MPT-related genes in COAD were explored, followed by molecular subtype analysis based on MPT characteristics by univariate Cox algorithm analysis and the consensus clustering algorithm. The gene signature associated with MPT molecular subtypes was further identified and the MPT scoring system was established by the LASSO-univariate Cox analysis algorithm. After evaluating the prognostic value of the MPT scoring system in COAD patients via nomogram establishment, the clinical value of the MPT scoring system was comprehensively analyzed through somatic mutation characteristics analysis, immunotherapy response analysis, immunoinfiltration analysis, and drug sensitivity analysis. CCK-8, WB, PCR, colony formation method, and Transwell method were used to verify the effect of the screened target on the proliferation and invasion of COAD cells.

Result: We successfully established a scoring system related to MPT and validated the prognostic value of COAD patients. The potential clinical value of the MPT scoring system was also analyzed. VSIG4 was selected for further in vitro experiments to verify the effect of the screened targets on the proliferation and invasion ability of COAD cells.

Conclusions: We established an MPT scoring system for effective risk stratification of COAD patients, demonstrating the impact of MPT on the development of COAD and its potential value as an intervention factor.

目的:探讨线粒体膜通透性转换(MPT)在结肠腺癌(COAD)中的作用:背景:进一步探索 COAD 预后评估的风险分层具有重要的临床价值。MPT 相关通路在包括肿瘤发生在内的许多人类疾病的发病机制中发挥着关键作用。其对 COAD 的影响尚不清楚:通过分析 GEO 数据库和 TCGA 数据库进行生物信息学分析,并通过体外实验验证生物信息学结果:方法:通过分析GEO数据库和TCGA数据库中1008个COAD样本的转录组数据,探讨MPT相关基因在COAD中的差异表达,然后通过单变量Cox算法分析和共识聚类算法,根据MPT特征进行分子亚型分析。进一步确定了与MPT分子亚型相关的基因特征,并通过LASSO-单变量Cox分析算法建立了MPT评分系统。在通过建立提名图评估了MPT评分系统在COAD患者中的预后价值后,又通过体细胞突变特征分析、免疫治疗反应分析、免疫浸润分析和药物敏感性分析,全面分析了MPT评分系统的临床价值。采用CCK-8、WB、PCR、集落形成法和Transwell法验证了筛选出的靶点对COAD细胞增殖和侵袭的影响:结果:我们成功建立了一套与MPT相关的评分系统,并验证了其对COAD患者预后的价值。结果:我们成功建立了与 MPT 相关的评分系统,并验证了 COAD 患者的预后价值,同时还分析了 MPT 评分系统的潜在临床价值。我们选择了 VSIG4 进行进一步体外实验,以验证筛选出的靶点对 COAD 细胞增殖和侵袭能力的影响:我们建立了一套 MPT 评分系统,用于对 COAD 患者进行有效的风险分层,证明了 MPT 对 COAD 发病的影响及其作为干预因素的潜在价值。
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引用次数: 0
Liposomal Nanoformulation-encapsulated Paclitaxel for Reducing Chemotherapy Side Effects in Lung Cancer Treatments: Recent Advances and Future Outlooks. 用于减少肺癌化疗副作用的纳米脂质体封装紫杉醇:最新进展与未来展望》。
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-04 DOI: 10.2174/0109298673308951240921121345
Kave Mohammad-Jafari, Seyed Morteza Naghib, M R Mozafari

Paclitaxel is one notable chemotherapy drug that is used to treat a number of cancers, including lung cancer. Nevertheless, it has drawbacks such as toxicity, low solubility in water, and the emergence of multidrug resistance (MDR). This article reviews the use of liposomal formulations to improve paclitaxel administration and efficacy for lung cancer therapy. Paclitaxel's pharmacological characteristics can be improved by liposomes through increased solubility, extended circulation, passive tumor targeting through leaky vasculature, and decreased side effects. Recent developments in paclitaxel liposomal formulations, including as cationic liposomes, conventional liposomes, targeted liposomes with particular ligands, and liposome-loaded microorganisms, are outlined in this article. In comparison to free paclitaxel, these nanoformulations exhibit enhanced cytotoxicity, cellular uptake, apoptosis, tumor growth suppression, and anticancer effects in lung cancer cell lines and animal models. One efficient way to get around the drawbacks of paclitaxel is to alter its size, makeup, and surface characteristics. This will let the medication accumulate and penetrate tumors more easily, avoid multidrug resistance, and cause less systemic toxicity. The article explores clinical studies showcasing the safety and therapeutic efficacy of liposomal paclitaxel for individuals afflicted with lung cancer. In its entirety, the document provides an in-depth examination of the potential enhancement in paclitaxel's dispersion and anti-tumor impacts through the utilization of liposomal technology when addressing diverse manifestations of lung cancer.

紫杉醇是一种著名的化疗药物,用于治疗包括肺癌在内的多种癌症。然而,它也有一些缺点,如毒性、水溶性低以及出现多药耐药性(MDR)。本文综述了如何利用脂质体制剂改善紫杉醇的给药和疗效以治疗肺癌。脂质体可通过增加溶解度、延长循环时间、通过渗漏血管被动靶向肿瘤以及减少副作用来改善紫杉醇的药理特性。本文概述了紫杉醇脂质体制剂的最新进展,包括阳离子脂质体、传统脂质体、含有特定配体的靶向脂质体以及装载脂质体的微生物。与游离紫杉醇相比,这些纳米制剂在肺癌细胞系和动物模型中表现出更强的细胞毒性、细胞摄取、细胞凋亡、肿瘤生长抑制和抗癌效果。解决紫杉醇缺点的一个有效方法是改变其大小、组成和表面特征。这将使药物更容易积聚和穿透肿瘤,避免多药耐药性,并减少全身毒性。文章探讨了临床研究,展示了脂质体紫杉醇对肺癌患者的安全性和疗效。全文深入探讨了在治疗各种表现的肺癌时,利用脂质体技术提高紫杉醇分散性和抗肿瘤效果的可能性。
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引用次数: 0
Design, Synthesis, Docking Studies, and Biological Activity of Novel Analogs of Cyclophosphamide as Potential Anticancer Agents. 环磷酰胺新型类似物作为潜在抗癌剂的设计、合成、对接研究和生物活性。
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-04 DOI: 10.2174/0109298673332921240920065129
Khodayar Gholivand, Soobieh Alemi Rostami, Marzie Sabaghian, Sanam Sadeghi-Mohammadi, Azam Babaei, Rahime Eshaghi Malekshah, Hossein Naderi-Manesh

Introduction: This study aimed to present the synthesis and characterization of four novel analogs of cyclophosphamide (2, 3, 4, 7) and their related precursors (1, 5, 6) and assess their anticancer activity against breast cancerous (MCF-7) and normal (HUVEC) cells.

Method: Notably, 2-(bis(2-chloroethyl)amino)-1,3,2-diazaphospholidine 2-oxide ((2)) and 2-(bis(2-hydroxyethyl)amino)-1,3,2-diazaphospholidine 2-oxide ((7)) exhibited concentration- dependent cytotoxicity against the MCF-7 cell line, with IC50 values of 8.98 and 28.74 μM, respectively.

Result: Annexin V/PI staining and ROS assays demonstrated reduced cell viability and mitochondrial dysfunction. in silico studies involving DFT-D optimization and Molegro virtual docking against B-DNA dodecamer and STAT3 receptors revealed enhanced interactions for certain compounds compared to cyclophosphamide.

Conclusion: Importantly, the in silico and in vitro results corroborated each other, supporting the potential anticancer efficacy of these novel analogs.

简介:本研究旨在介绍四种新型环磷酰胺类似物(2、3、4、7)及其相关前体(1、5、6)的合成和表征,并评估它们对乳腺癌细胞(MCF-7)和正常细胞(HUVEC)的抗癌活性:方法:2-(双(2-氯乙基)氨基)-1,3,2-二氮磷啶 2-氧化物((2))和 2-(双(2-羟乙基)氨基)-1,3,2-二氮磷啶 2-氧化物((7))对 MCF-7 细胞株具有浓度依赖性细胞毒性,IC50 值分别为 8.98 和 28.74 μM:结果:Annexin V/PI 染色和 ROS 分析表明细胞活力降低和线粒体功能障碍。针对 B-DNA 十二聚体和 STAT3 受体进行 DFT-D 优化和 Molegro 虚拟对接的硅学研究显示,与环磷酰胺相比,某些化合物的相互作用增强:重要的是,硅学和体外结果相互印证,支持了这些新型类似物的潜在抗癌功效。
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引用次数: 0
Quassinoids as Promising Anti-cancer Agents. 有望成为抗癌剂的类槲皮素
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-04 DOI: 10.2174/0109298673313760240911160930
Tripti Mishra, Saima, Bimal Krishna Banik

The use of current anticancer drugs is hampered by significant side effects and high costs. In the pursuit of safer, more effective, and affordable options, researchers have turned to nature as a valuable source of potential anticancer compounds. Quassinoids, a class of natural terpenoids, have garnered attention for their anticancer properties. This comprehensive review aims to shed light on natural quassinoids and their anticancer effects, offering valuable insights for researchers dedicated to the development of novel anticancer therapeutics.

目前抗癌药物的使用受到严重副作用和高昂费用的阻碍。为了寻求更安全、更有效、更经济的治疗方案,研究人员将大自然作为潜在抗癌化合物的宝贵来源。槲皮素是一类天然萜类化合物,因其抗癌特性而备受关注。本综述旨在阐明天然类槲皮素及其抗癌作用,为致力于开发新型抗癌疗法的研究人员提供有价值的见解。
{"title":"Quassinoids as Promising Anti-cancer Agents.","authors":"Tripti Mishra, Saima, Bimal Krishna Banik","doi":"10.2174/0109298673313760240911160930","DOIUrl":"https://doi.org/10.2174/0109298673313760240911160930","url":null,"abstract":"<p><p>The use of current anticancer drugs is hampered by significant side effects and high costs. In the pursuit of safer, more effective, and affordable options, researchers have turned to nature as a valuable source of potential anticancer compounds. Quassinoids, a class of natural terpenoids, have garnered attention for their anticancer properties. This comprehensive review aims to shed light on natural quassinoids and their anticancer effects, offering valuable insights for researchers dedicated to the development of novel anticancer therapeutics.</p>","PeriodicalId":10984,"journal":{"name":"Current medicinal chemistry","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142388780","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrated Exploration of Pyranocoumarin Derivatives as Synergistic Inhibitors of Dual-target for Mpro and PLpro Proteins of SARS-CoV-2 through Molecular Docking, ADMET Analysis, and Molecular Dynamics Simulation. 通过分子对接、ADMET分析和分子动力学模拟综合探索吡喃香豆素衍生物作为SARS-CoV-2的Mpro和PLpro蛋白双靶标协同抑制剂
IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-03 DOI: 10.2174/0109298673331781240829094334
Imane Yamari, Lamiae El Bouamri, Oussama Abchir, Mohammed Bouachrine, Mhammed El Kouali, Abdelouahid Samadi, Samir Chtita

Aims: This study aimed to explore the potential of natural anticoagulant compounds as synergistic inhibitors of the main protease (Mpro) and papain-like protease (PLpro) of SARS-CoV-2 and find effective therapies against SARS-CoV-2 by investigating the inhibitory effects of natural anticoagulant compounds on key viral proteases.

Objective: The objectives of this study were to conduct rigorous virtual screening and molecular docking analyses to evaluate the binding affinities and interactions of selected anticoagulant compounds with Mpro and PLpro, to assess the pharmacokinetic and pharmacodynamic profiles of the compounds to determine their viability for therapeutic use, and to employ molecular dynamics simulations to understand the stability of the identified compounds over time.

Methods: In this study, a curated collection of natural anticoagulant compounds was conducted. Virtual screening and molecular docking analyses were performed to assess binding affinities and interactions with Mpro and PLpro. Furthermore, pharmacokinetic and pharmacodynamic analyses were carried out to evaluate absorption, distribution, metabolism, and excretion profiles. Molecular dynamics simulations were performed to elucidate compound stability.

Results: Natural compounds exhibiting significant inhibitory activity against Mpro and PLpro were identified. A dual-target approach was established as a promising strategy for attenuating viral replication and addressing coagulopathic complications associated with SARS-CoV-2 infection.

Conclusion: The study lays a solid foundation for experimental validation and optimization of identified compounds, potentially leading to the development of precise treatments for SARS-CoV-2.

目的:本研究旨在探索天然抗凝剂化合物作为SARS-CoV-2主要蛋白酶(Mpro)和木瓜蛋白酶(PLpro)协同抑制剂的潜力,并通过研究天然抗凝剂化合物对关键病毒蛋白酶的抑制作用,找到抗击SARS-CoV-2的有效疗法:本研究的目的是进行严格的虚拟筛选和分子对接分析,以评估选定的抗凝剂化合物与Mpro和PLpro的结合亲和力和相互作用,评估化合物的药代动力学和药效学特征,以确定其治疗用途的可行性,并采用分子动力学模拟来了解已鉴定化合物的长期稳定性:本研究收集了一系列天然抗凝化合物。进行了虚拟筛选和分子对接分析,以评估与 Mpro 和 PLpro 的结合亲和力和相互作用。此外,还进行了药代动力学和药效学分析,以评估吸收、分布、代谢和排泄情况。还进行了分子动力学模拟,以阐明化合物的稳定性:结果:发现了对 Mpro 和 PLpro 具有明显抑制活性的天然化合物。双靶点方法被认为是一种很有前途的策略,既能抑制病毒复制,又能解决与 SARS-CoV-2 感染相关的凝血病理并发症:结论:这项研究为已鉴定化合物的实验验证和优化奠定了坚实的基础,有望开发出治疗 SARS-CoV-2 的精确疗法。
{"title":"Integrated Exploration of Pyranocoumarin Derivatives as Synergistic Inhibitors of Dual-target for Mpro and PLpro Proteins of SARS-CoV-2 through Molecular Docking, ADMET Analysis, and Molecular Dynamics Simulation.","authors":"Imane Yamari, Lamiae El Bouamri, Oussama Abchir, Mohammed Bouachrine, Mhammed El Kouali, Abdelouahid Samadi, Samir Chtita","doi":"10.2174/0109298673331781240829094334","DOIUrl":"https://doi.org/10.2174/0109298673331781240829094334","url":null,"abstract":"<p><strong>Aims: </strong>This study aimed to explore the potential of natural anticoagulant compounds as synergistic inhibitors of the main protease (Mpro) and papain-like protease (PLpro) of SARS-CoV-2 and find effective therapies against SARS-CoV-2 by investigating the inhibitory effects of natural anticoagulant compounds on key viral proteases.</p><p><strong>Objective: </strong>The objectives of this study were to conduct rigorous virtual screening and molecular docking analyses to evaluate the binding affinities and interactions of selected anticoagulant compounds with Mpro and PLpro, to assess the pharmacokinetic and pharmacodynamic profiles of the compounds to determine their viability for therapeutic use, and to employ molecular dynamics simulations to understand the stability of the identified compounds over time.</p><p><strong>Methods: </strong>In this study, a curated collection of natural anticoagulant compounds was conducted. Virtual screening and molecular docking analyses were performed to assess binding affinities and interactions with Mpro and PLpro. Furthermore, pharmacokinetic and pharmacodynamic analyses were carried out to evaluate absorption, distribution, metabolism, and excretion profiles. Molecular dynamics simulations were performed to elucidate compound stability.</p><p><strong>Results: </strong>Natural compounds exhibiting significant inhibitory activity against Mpro and PLpro were identified. A dual-target approach was established as a promising strategy for attenuating viral replication and addressing coagulopathic complications associated with SARS-CoV-2 infection.</p><p><strong>Conclusion: </strong>The study lays a solid foundation for experimental validation and optimization of identified compounds, potentially leading to the development of precise treatments for SARS-CoV-2.</p>","PeriodicalId":10984,"journal":{"name":"Current medicinal chemistry","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142371234","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Current medicinal chemistry
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