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Extracellular vesicles and viruses. 细胞外囊泡和病毒。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-07-31 DOI: 10.1016/bs.ctm.2025.07.004
Juliana Fortes, Gabriela Villa Marin, Náthani Negreiros, Vanessa C M Silva, Ana Claudia Torrecilhas

Viruses are subcellular structures that depend on the host cell to replicate, sharing several characteristics with extracellular vesicles (EVs). EVs act in intercellular communication and the regulation of the immune system and can be exploited by viruses as vehicles for transport and dissemination between cells and organs. Although they may favor viral infection, EVs also stand out as potential biomarkers for the diagnosis of viral diseases, as they reflect the physiological and pathological state of the originating cells. These particles can contain viral RNA and specific proteins, allowing for the distinction between different types of infection. Moreover, EVs have great therapeutic potential and are being studied as nanotherapeutic tools due to their low immunogenicity, ability to cross cellular barriers, and ease of modification to allow delivery around the body and tissues. This chapter addresses the interactions between EVs and viruses, as well as the advancements in the use of these structures in diagnosis and the development of new therapeutic strategies. Understanding these mechanisms can significantly contribute to the control of viral infections and the creation of innovative therapies to treat emerging diseases.

病毒是依赖宿主细胞进行复制的亚细胞结构,与细胞外囊泡(EVs)有几个共同特征。ev在细胞间通讯和免疫系统调节中起作用,并可被病毒利用作为细胞和器官之间运输和传播的载体。虽然它们可能有利于病毒感染,但ev也作为病毒性疾病诊断的潜在生物标志物而突出,因为它们反映了起源细胞的生理和病理状态。这些颗粒可以包含病毒RNA和特定蛋白质,从而区分不同类型的感染。此外,电动汽车具有巨大的治疗潜力,由于其低免疫原性、跨越细胞屏障的能力以及易于修饰以允许在身体和组织周围递送,因此正在研究作为纳米治疗工具。本章讨论了ev和病毒之间的相互作用,以及这些结构在诊断和新治疗策略开发方面的进展。了解这些机制可以大大有助于控制病毒感染和创造治疗新发疾病的创新疗法。
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引用次数: 0
Preface. 前言。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1016/S1063-5823(25)00042-0
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引用次数: 0
Bacterial outer membrane vesicles: Potential and applications in next-generation vaccines. 细菌外膜囊泡:在下一代疫苗中的潜力和应用。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-07-29 DOI: 10.1016/bs.ctm.2025.07.003
Letícia Pereira Pedrini Vicentini, Marcus Alexandre Vaillant Beltrame, Blima Fux

Outer membrane vesicles, released by Gram-negative bacteria, have attracted increasing attention in biotechnology due to their structural similarity to bacterial cells, their composition rich in immunogenic factors, and their role in pathogen-host interactions. Although they are involved in multiple functions related to bacterial pathophysiology, their applicability as vaccine platforms has emerged as a promising strategy for the development of next-generation vaccines. OMVs offer significant advantages over traditional vaccines, including the induction of robust T cell-mediated immune responses, the natural presence of pathogen-associated molecular patterns with adjuvant effects, and the possibility of bioengineering to display heterologous antigens. Preclinical trials using OMVs have demonstrated effective protection against infection, highlighting their versatility and safety. In addition, their stability, lack of replicative capacity, and ease of production make OMVs a highly attractive platform, including for emerging diseases and applications in cancer immunotherapy. This chapter discusses the structural and functional aspects of OMVs, with emphasis on their innovative potential in the vaccine field, while also addressing the technological challenges related to their standardization, purification, and industrial scale-up.

革兰氏阴性菌释放的外膜囊泡因其与细菌细胞结构相似、组成中富含免疫原性因子以及在病原体与宿主相互作用中的作用而越来越受到生物技术领域的关注。尽管它们参与了与细菌病理生理相关的多种功能,但它们作为疫苗平台的适用性已成为开发下一代疫苗的一种有前途的策略。与传统疫苗相比,omv具有显著的优势,包括诱导强大的T细胞介导的免疫反应,具有佐剂作用的病原体相关分子模式的自然存在,以及生物工程显示异源抗原的可能性。使用omv的临床前试验已经证明了对感染的有效保护,突出了它们的多功能性和安全性。此外,它们的稳定性、缺乏复制能力和易于生产使omv成为极具吸引力的平台,包括用于新出现的疾病和癌症免疫治疗中的应用。本章讨论了omv的结构和功能方面,重点讨论了它们在疫苗领域的创新潜力,同时也解决了与它们的标准化、纯化和工业规模扩大有关的技术挑战。
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引用次数: 0
Nutrient acquisition at the membrane interface: Trypanosomatids subverting host defenses. 膜界面的营养获取:锥虫破坏宿主防御。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-07-16 DOI: 10.1016/bs.ctm.2025.06.002
Romário Lopes Boy, Lucas Felipe Almeida Athayde, Nassib Saab Daniel, Maria Fernanda Laranjeira-Silva

Trypanosoma brucei, Trypanosoma cruzi, and Leishmania spp. are the trypanosomatid parasites responsible for some of the most significant neglected tropical diseases, such as trypanosomiases and leishmaniases, which impact millions of people globally. Alarmingly, some of these diseases have expanded into previously unaffected regions in recent years. These parasites alternate between invertebrate and vertebrate hosts during their life cycles, adapting to different environments and competing with their hosts for several nutrients. To survive, they have evolved complex strategies to acquire essential nutrients, often subverting host immune defenses and overcoming host-imposed nutritional barriers. This chapter explores the membrane-dependent mechanisms of nutrient sensing and uptake in T. brucei, T. cruzi, and Leishmania spp., with an emphasis on how these parasites adapt to nutrient-limited conditions within their host. Following an overview of the challenges posed by host imposed nutrient restrictions, we examine the parasites' membrane-associated processes and metabolic adaptations that enable their survival. The chapter spans a wide range of micro- and macronutrients-lipids, fatty acids, carbohydrates, amino acids, and metals-discussing the roles of membrane proteins in nutrient scavenging, the metabolic pathways they trigger, and their physiological importance for parasite survival, growth, and infectivity. Special attention is given to the mechanisms by which these parasites evade nutritional immunity, a host defense strategy that limits nutrient availability to pathogens. By shedding light on these nutrient acquisition strategies, this chapter aims to advance our understanding of host-parasite interactions and identify potential targets for therapeutic interventions aimed at the metabolic vulnerabilities of these parasites.

布鲁氏锥虫、克氏锥虫和利什曼原虫是导致一些最严重的被忽视的热带病的锥虫寄生虫,例如影响全球数百万人的锥虫病和利什曼病。令人震惊的是,近年来,其中一些疾病已扩展到以前未受影响的地区。这些寄生虫在其生命周期中交替于无脊椎动物和脊椎动物宿主之间,适应不同的环境,并与宿主争夺几种营养物质。为了生存,它们进化出了复杂的策略来获取必需的营养,经常破坏宿主的免疫防御,克服宿主施加的营养障碍。本章探讨了布鲁氏体、克氏体和利什曼原虫的营养感知和吸收的膜依赖机制,重点是这些寄生虫如何适应宿主体内营养有限的条件。在概述了宿主施加的营养限制所带来的挑战之后,我们研究了寄生虫的膜相关过程和代谢适应,使它们能够生存。本章涵盖了广泛的微量和宏量营养素-脂质,脂肪酸,碳水化合物,氨基酸和金属-讨论膜蛋白在营养清除中的作用,它们触发的代谢途径,以及它们对寄生虫生存,生长和传染性的生理重要性。特别关注这些寄生虫逃避营养免疫的机制,这是一种宿主防御策略,限制了病原体的营养可用性。通过阐明这些营养获取策略,本章旨在促进我们对宿主-寄生虫相互作用的理解,并确定针对这些寄生虫代谢脆弱性的治疗干预的潜在目标。
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引用次数: 0
Fungal extracellular vesicles: Advances and perspectives in treatments, therapies, and vaccination. 真菌细胞外囊泡:治疗、治疗和疫苗的进展和前景。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-10-11 DOI: 10.1016/bs.ctm.2025.07.008
Karen Spadari Ferreira, Sarah Fernandes Lima, Larissa Dos Santos Duarte, Wagner Luiz Batista

Extracellular vesicles (EVs) are membrane-bound nanostructures secreted by various cell types under physiological and pathological conditions. These vesicles carry a diverse cargo of biologically active molecules, including proteins, lipids, nucleic acids, and metabolites. The molecular and structural heterogeneity of EVs presents challenges in fundamental biology, biomarker development, and therapeutic applications. Fungal EVs have gained attention for their roles in pathogenesis, immune modulation, and potential targets for therapies and vaccines. EVs have numerous roles in intercellular communication, facilitated by the transfer of cargo to recipient cells or the interaction of EV surface proteins with cellular receptors. However, the question of how they traverse the cell wall remains a mystery. Fungal EVs can modulate the cell wall through enzymes, contributing to the transition of EVs by the fungal cell wall. As research progresses and technological barriers are overcome, EVs are emerging as valuable targets and promising tools in precision medicine. With continuous improvements in EV isolation, characterization, and manipulation, the next decade is likely to bring significant breakthroughs that will have a profound impact on both basic science and clinical practice.

细胞外囊泡(EVs)是在生理和病理条件下由各种细胞类型分泌的膜结合纳米结构。这些囊泡携带多种生物活性分子,包括蛋白质、脂质、核酸和代谢物。电动汽车的分子和结构异质性在基础生物学、生物标志物开发和治疗应用方面提出了挑战。真菌EVs因其在发病机制、免疫调节以及治疗和疫苗的潜在靶点等方面的作用而受到关注。电动汽车在细胞间通讯中有许多作用,通过将货物转移到受体细胞或电动汽车表面蛋白与细胞受体的相互作用来促进。然而,它们如何穿过细胞壁的问题仍然是一个谜。真菌EVs可以通过酶调节细胞壁,促进EVs通过真菌细胞壁转化。随着研究进展和技术障碍的克服,电动汽车正在成为精准医疗中有价值的目标和有前途的工具。随着EV分离,表征和操作的不断改进,未来十年可能会带来重大突破,这将对基础科学和临床实践产生深远影响。
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引用次数: 0
Quantification and characterization of extracellular vesicles by flow cytometry. 流式细胞术对细胞外囊泡的定量和表征。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-10-15 DOI: 10.1016/bs.ctm.2025.09.002
Ekaterina Petrovich-Kopitman, Joshua A Welsh, Shimrit Adutler-Lieber, Avraham Dayan, Ziv Porat

Extracellular vesicles (EVs) are nano-sized, membrane-surrounded vesicles released by cells under both physiological and pathological conditions. Due to their small size and heterogeneity, comprehensive characterization of EVs remains technically challenging. Among the various analytical tools developed, flow cytometry stands out as a highly versatile and scalable platform, offering high-throughput analysis, multiparametric phenotyping, and quantitative detection. However, conventional flow cytometers are typically designed for cell-sized particles (0.5-40 µm) and require specific optimizations to reliably detect and analyze EVs, which are significantly smaller and result in weaker signals. These optimizations include instrument settings, sample handling and labelling strategies as well as acquisition protocols. Robust calibration and the use of appropriate controls are essential to ensure data accuracy and reproducibility across platforms. In this chapter, we outline the principles, technical considerations, and advantages of applying flow cytometry and imaging flow cytometry to EV research. We also highlight representative applications in both scientific and clinical contexts and discuss future directions for the field.

细胞外囊泡(EVs)是细胞在生理和病理条件下释放的纳米级、膜包围的囊泡。由于电动汽车的体积小且具有异质性,因此全面表征电动汽车在技术上仍然具有挑战性。在开发的各种分析工具中,流式细胞术作为一个高度通用和可扩展的平台脱颖而出,提供高通量分析,多参数表型和定量检测。然而,传统的流式细胞仪通常是为细胞大小的颗粒(0.5-40µm)设计的,并且需要特定的优化来可靠地检测和分析电动汽车,这些电动汽车明显更小,导致信号更弱。这些优化包括仪器设置、样品处理和标签策略以及采集协议。稳健的校准和使用适当的控制对于确保各平台数据的准确性和可重复性至关重要。在本章中,我们概述了流式细胞术和成像流式细胞术应用于EV研究的原理、技术考虑和优势。我们还强调了在科学和临床环境中的代表性应用,并讨论了该领域的未来方向。
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引用次数: 0
Preface. 前言。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1016/S1063-5823(25)00028-6
Thiago Castro-Gomes
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引用次数: 0
Entamoeba histolytica: Plasma membrane components and virulence factors in the invasive process. 溶组织内阿米巴:侵袭过程中的质膜成分和毒力因子。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-07-18 DOI: 10.1016/bs.ctm.2025.06.001
Adriana Oliveira Costa, Maria Aparecida Gomes

Entamoeba histolytica, the etiological agent of amoebiasis, is a parasitic protozoan responsible for severe gastrointestinal complications, including colitis and hepatic abscesses. The parasite primarily colonizes the human large intestine, where the active stages confront a hostile environment. Specialized adaptations in the plasma membrane of E. histolytica are critical for survive in this niche and enable the parasite to persist harmlessly in asymptomatic infection or initiate pathogenic interactions that lead to tissue invasion. Early events in pathogenesis are the breaching of the intestinal mucus layer and the subsequent contact with enteric cell. Thes processes have a link to adhesion, and along with concurrent steps such as host cell killing, immune evasion and immunomodulation, depend on the structural and molecular composition of the parasite´s plasma membrane. Over decades, studies on its diverse plasma membrane´s components have unraveled several mechanisms that guarantee the success of E. histolytica as an intestinal pathogen. This chapter explores how factors associated to plasma membrane contribute to the parasite´s ability to thrive in the intestinal environment, evade host defenses, and thrive disease progression.

溶组织内阿米巴原虫是阿米巴病的病原,是一种寄生原生动物,可导致严重的胃肠道并发症,包括结肠炎和肝脓肿。这种寄生虫主要寄居在人类的大肠中,在那里,活跃阶段面临着恶劣的环境。溶组织芽胞杆菌质膜上的特殊适应性对于在这个生态位中生存至关重要,并使寄生虫能够在无症状感染中无害地持续存在或启动导致组织入侵的致病性相互作用。发病的早期事件是肠黏液层的破裂和随后与肠细胞的接触。这些过程与粘附有关,并与宿主细胞杀伤、免疫逃避和免疫调节等同步进行,取决于寄生虫质膜的结构和分子组成。几十年来,对其多种质膜成分的研究已经揭示了保证溶组织芽胞杆菌作为肠道病原体成功的几种机制。本章探讨了与质膜相关的因子如何促进寄生虫在肠道环境中茁壮成长,逃避宿主防御,并促进疾病进展。
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引用次数: 0
Membrane dynamics in giardia: Structure, function, and host interactions. 贾第鞭毛虫的膜动力学:结构、功能和宿主相互作用。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-07-19 DOI: 10.1016/bs.ctm.2025.06.005
Bruno Vicente, Anna de Freitas, Victor Midlej

Giardia intestinalis is an extracellular parasite that inhabits the human intestinal tract, with trophozoite and cyst stages in its life cycle. In this chapter we review basic aspects of structural organization, integrating information of the role of the plasma membrane in various aspects related to its composition, function, and importance at different stages, from the trophozoite form, involvement in encystation, to interactions with the host. Additionally, the membrane's composition, biochemical activities, receptors, and various functions it performs at different stages will be thoroughly explored. The parasite exhibits a unique and fascinating organelle: the peripheral vesicles (PVs). The membranes of these PVs will be explored, foscusing in how they drive endocytic uptake, mediate exocytic release, and carry out lysosomal degradation, all of which are essential for maintaining cellular homeostasis. Additionally, the membranes of the endoplasmic reticulum and their critical role in protein maturation and compartmentalization, both vital for proper cellular functions, will be addressed. Another key role of membranes to be explored is in the encystation process, with the presence of encystation-specific vesicles (ESVs), which are crucial in the life cycle of G. intestinalis, enabling survival in hostile conditions. The transformation of these vesicles and their contribution to protein maturation, ensuring the infectivity and resistance of the parasite, will offer a comprehensive understanding of the mechanisms underlying this parasite's survival and adaptation. The modulation of Giardia's membranes during the adhesion process to host cells will also be addressed, along with the variant surface proteins (VSPs), which are key players in the parasite's immune evasion mechanisms.

肠贾第鞭毛虫是一种寄生于人肠道的细胞外寄生虫,在其生命周期中有滋养体和囊肿阶段。在本章中,我们回顾了结构组织的基本方面,整合了质膜在不同阶段的组成、功能和重要性的各个方面的作用信息,从滋养体的形式,参与成囊,到与宿主的相互作用。此外,将深入探讨膜的组成,生化活性,受体及其在不同阶段的各种功能。寄生虫展示了一种独特而迷人的细胞器:外周囊泡(pv)。这些pv的膜将被探索,重点是它们如何驱动内吞摄取,介导胞外释放,并进行溶酶体降解,所有这些都是维持细胞稳态所必需的。此外,内质网的膜及其在蛋白质成熟和区隔化中的关键作用,对正常的细胞功能都至关重要,将被解决。膜的另一个关键作用是在成囊过程中,有特定的成囊泡(esv)的存在,这在肠芽孢杆菌的生命周期中至关重要,使其能够在恶劣条件下存活。这些囊泡的转化及其对蛋白质成熟的贡献,确保寄生虫的传染性和抗性,将提供对这种寄生虫生存和适应的机制的全面理解。贾第鞭毛虫在与宿主细胞粘附过程中对其膜的调节,以及在寄生虫免疫逃避机制中起关键作用的变异表面蛋白(VSPs)也将被讨论。
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引用次数: 0
Plant derived nanovesicles and their clinical applications. 植物源性纳米囊泡及其临床应用。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-08-05 DOI: 10.1016/bs.ctm.2025.07.009
Mari Cruz Manzaneque, Enrique Cabán, Pilar Ramirez, Carla Paz-Meseguer, Christian M Sánchez-López, Aránzazu González-Arce, Dolores Bernal, Pedro Pérez-Bermúdez, Alba Cortés, Carla Soler, Antonio Marcilla

Plants release extracellular vesicles and numerous investigations have reported their characterization, either isolated from the apoplastic fluid of different plant sources, the phloem sap or in vitro plant cultures. The term plant derived nanovesicles is applied to vesicles isolated from fruit juices or from homogenized plant tissues/organs. Plant derived nanovesicles share similar components with canonical plant vesicles, including proteins, lipids, nucleic acids, carbohydrates and secondary metabolites, which reflect the composition of the parental tissues/cells. In recent years, several studies have dealt with potential biomedical applications of plant derived nanovesicles, including their use as delivery agents, including vaccines, and their use as therapeutics (like in inflammation conditions and cancer), as well as mediators in regenerative medicine. Furthermore, their use in cosmetics is also gaining attention. Although plant derived nanovesicles have emerged as promising biomaterials for the pharmaceutical industry, critical aspects hinder the rapid translation of basic and preclinical studies to a clinical setting. They include the precise identification of bioactive compounds responsible for the effects detected in vitro, and studies are required to evaluate their effect in humans. In addition, it is necessary to develop protocols to optimize their production in a scalable, sustained and adequate cost-effective relation.

植物释放细胞外囊泡,许多研究已经报道了它们的特性,无论是从不同植物来源的外胞液,韧皮部汁液还是离体植物培养物中分离出来的。术语植物源性纳米囊泡是指从果汁或均质植物组织/器官中分离出来的囊泡。植物源性纳米囊泡与标准植物囊泡具有相似的成分,包括蛋白质、脂质、核酸、碳水化合物和次生代谢物,反映了亲本组织/细胞的组成。近年来,一些研究涉及植物源性纳米囊泡的潜在生物医学应用,包括将其用作递送剂(包括疫苗)、用作治疗剂(如炎症和癌症)以及用作再生医学中的介质。此外,它们在化妆品中的应用也引起了人们的关注。尽管植物衍生的纳米囊泡已经成为制药工业中很有前途的生物材料,但关键方面阻碍了基础和临床前研究向临床环境的快速转化。它们包括精确鉴定在体外检测到的影响的生物活性化合物,并需要进行研究以评估其对人体的影响。此外,有必要制定协议,以可扩展、持续和充分的成本效益关系优化其生产。
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引用次数: 0
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