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The expanding toolbox to study the LRRC8-formed volume-regulated anion channel VRAC. 扩展工具箱研究lrrc8形成的体积调节阴离子通道VRAC。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 Epub Date: 2021-11-09 DOI: 10.1016/bs.ctm.2021.10.001
Yulia Kolobkova, Sumaira Pervaiz, Tobias Stauber

The volume-regulated anion channel (VRAC) is activated upon cell swelling and facilitates the passive movement of anions across the plasma membrane in cells. VRAC function underlies many critical homeostatic processes in vertebrate cells. Among them are the regulation of cell volume and membrane potential, glutamate release and apoptosis. VRAC is also permeable for organic osmolytes and metabolites including some anti-cancer drugs and antibiotics. Therefore, a fundamental understanding of VRAC's structure-function relationships, its physiological roles, its utility for therapy of diseases, and the development of compounds modulating its activity are important research frontiers. Here, we describe approaches that have been applied to study VRAC since it was first described more than 30 years ago, providing an overview of the recent methodological progress. The diverse applications reflecting a compromise between the physiological situation, biochemical definition, and biophysical resolution range from the study of VRAC activity using a classic electrophysiology approach, to the measurement of osmolytes transport by various means and the investigation of its activation using a novel biophysical approach based on fluorescence resonance energy transfer.

体积调节阴离子通道(VRAC)在细胞膨胀时被激活,促进阴离子在细胞内通过质膜的被动运动。VRAC功能是脊椎动物细胞中许多关键稳态过程的基础。其中包括调节细胞体积和膜电位、谷氨酸释放和细胞凋亡。VRAC也可渗透有机渗透物和代谢物,包括一些抗癌药物和抗生素。因此,了解VRAC的结构-功能关系、生理作用、疾病治疗以及调节其活性的化合物的开发是重要的研究前沿。在这里,我们描述了自30多年前首次描述VRAC以来应用于研究的方法,概述了最近的方法进展。不同的应用反映了生理情况、生化定义和生物物理分辨率之间的折衷,从使用经典电生理学方法研究VRAC活性,到通过各种手段测量渗透物运输,以及使用基于荧光共振能量转移的新型生物物理方法研究其激活。
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引用次数: 3
Mass spectrometry-based lipid analysis and imaging. 基于质谱的脂质分析和成像。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 Epub Date: 2021-11-09 DOI: 10.1016/bs.ctm.2021.10.005
Koralege C Pathmasiri, Thu T A Nguyen, Nigina Khamidova, Stephanie M Cologna

Mass spectrometry imaging (MSI) is a powerful tool for in situ mapping of analytes across a sample. With growing interest in lipid biochemistry, the ability to perform such mapping without antibodies has opened many opportunities for MSI and lipid analysis. Herein, we discuss the basics of MSI with particular emphasis on MALDI mass spectrometry and lipid analysis. A discussion of critical advancements as well as protocol details are provided to the reader. In addition, strategies for improving the detection of lipids, as well as applications in biomedical research, are presented.

质谱成像(MSI)是一种强大的工具,可以在样品中对分析物进行原位测绘。随着人们对脂质生物化学的兴趣日益浓厚,在没有抗体的情况下进行这种制图的能力为MSI和脂质分析开辟了许多机会。在这里,我们讨论MSI的基础,特别强调MALDI质谱和脂质分析。对关键进展的讨论以及协议细节提供给读者。此外,提出了改进脂质检测的策略,以及在生物医学研究中的应用。
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引用次数: 2
Deciphering lipid transfer between and within membranes with time-resolved small-angle neutron scattering. 用时间分辨的小角中子散射解译膜间和膜内的脂质转移。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 Epub Date: 2021-11-11 DOI: 10.1016/bs.ctm.2021.10.004
Ursula Perez-Salas, Sumit Garg, Yuri Gerelli, Lionel Porcar

This review focuses on time-resolved neutron scattering, particularly time-resolved small angle neutron scattering (TR-SANS), as a powerful in situ noninvasive technique to investigate intra- and intermembrane transport and distribution of lipids and sterols in lipid membranes. In contrast to using molecular analogues with potentially large chemical tags that can significantly alter transport properties, small angle neutron scattering relies on the relative amounts of the two most abundant isotope forms of hydrogen: protium and deuterium to detect complex membrane architectures and transport processes unambiguously. This review discusses advances in our understanding of the mechanisms that sustain lipid asymmetry in membranes-a key feature of the plasma membrane of cells-as well as the transport of lipids between membranes, which is an essential metabolic process.

本文综述了时间分辨中子散射,特别是时间分辨小角中子散射(TR-SANS)作为一种强大的原位无创技术,用于研究脂质膜内和膜间的脂质和甾醇运输和分布。与使用具有潜在大化学标签的分子类似物可以显著改变输运性质相比,小角度中子散射依赖于氢的两种最丰富的同位素形式:质子和氘的相对数量,以明确地检测复杂的膜结构和输运过程。本文综述了维持细胞膜脂质不对称(细胞质膜的一个关键特征)的机制以及脂质在膜间的运输这一重要代谢过程的研究进展。
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引用次数: 1
Mechanotransduction in fibrosis: Mechanisms and treatment targets. 纤维化的机械转导:机制和治疗靶点。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 Epub Date: 2021-10-05 DOI: 10.1016/bs.ctm.2021.07.004
Chih-Fan Yeh, Caroline Chou, Kai-Chien Yang

To perceive and integrate the environmental cues, cells and tissues sense and interpret various physical forces like shear, tensile, and compression stress. Mechanotransduction involves the sensing and translation of mechanical forces into biochemical and mechanical signals to guide cell fate and achieve tissue homeostasis. Disruption of this mechanical homeostasis by tissue injury elicits multiple cellular responses leading to pathological matrix deposition and tissue stiffening, and consequent evolution toward pro-inflammatory/pro-fibrotic phenotypes, leading to tissue/organ fibrosis. This review focuses on the molecular mechanisms linking mechanotransduction to fibrosis and uncovers the potential therapeutic targets to halt or resolve fibrosis.

为了感知和整合环境线索,细胞和组织感知和解释各种物理力,如剪切、拉伸和压缩应力。机械转导包括感知机械力并将其转化为生化和机械信号,以指导细胞命运和实现组织稳态。组织损伤破坏这种机械稳态,引发多种细胞反应,导致病理性基质沉积和组织硬化,随后向促炎/促纤维化表型进化,导致组织/器官纤维化。本文综述了机械转导与纤维化的分子机制,并揭示了阻止或解决纤维化的潜在治疗靶点。
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引用次数: 2
Cardiovascular mechanosensitive ion channels-Translating physical forces into physiological responses. 心血管机械敏感离子通道——将物理力转化为生理反应。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 Epub Date: 2021-10-07 DOI: 10.1016/bs.ctm.2021.07.001
Ibra S Fancher

Cells and tissues are constantly exposed to mechanical stress. In order to respond to alterations in mechanical stimuli, specific cellular machinery must be in place to rapidly convert physical force into chemical signaling to achieve the desired physiological responses. Mechanosensitive ion channels respond to such physical stimuli in the order of microseconds and are therefore essential components to mechanotransduction. Our understanding of how these ion channels contribute to cellular and physiological responses to mechanical force has vastly expanded in the last few decades due to engineering ingenuities accompanying patch clamp electrophysiology, as well as sophisticated molecular and genetic approaches. Such investigations have unveiled major implications for mechanosensitive ion channels in cardiovascular health and disease. Therefore, in this chapter I focus on our present understanding of how biophysical activation of various mechanosensitive ion channels promotes distinct cell signaling events with tissue-specific physiological responses in the cardiovascular system. Specifically, I discuss the roles of mechanosensitive ion channels in mediating (i) endothelial and smooth muscle cell control of vascular tone, (ii) mechano-electric feedback and cell signaling pathways in cardiomyocytes and cardiac fibroblasts, and (iii) the baroreflex.

细胞和组织不断受到机械应力的影响。为了对机械刺激的变化做出反应,特定的细胞机制必须到位,将物理力迅速转化为化学信号,以实现所需的生理反应。机械敏感离子通道对这种物理刺激的反应在微秒级,因此是机械转导的重要组成部分。在过去的几十年里,我们对这些离子通道如何促进细胞和生理对机械力的反应的理解已经大大扩展,这要归功于伴随膜片钳电生理学的工程技术,以及复杂的分子和遗传方法。这些研究揭示了机械敏感离子通道在心血管健康和疾病中的重要意义。因此,在本章中,我将重点介绍我们目前对各种机械敏感离子通道的生物物理激活如何促进心血管系统中具有组织特异性生理反应的不同细胞信号事件的理解。具体来说,我讨论了机械敏感离子通道在介导(I)内皮细胞和平滑肌细胞对血管张力的控制,(ii)心肌细胞和心脏成纤维细胞的机电反馈和细胞信号通路,以及(iii)压力反射中的作用。
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引用次数: 1
New Methods and Sensors for Membrane and Cell Volume Research 膜和细胞体积研究的新方法和传感器
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 DOI: 10.1016/s1063-5823(21)x0003-8
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引用次数: 0
Evaluating membrane structure by Laurdan imaging: Disruption of lipid packing by oxidized lipids. 利用Laurdan成像评价膜结构:氧化脂质破坏脂质包装。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 Epub Date: 2021-11-18 DOI: 10.1016/bs.ctm.2021.10.003
Irena Levitan

Impact of different lipids on membrane structure/lipid order is critical for multiple biological processes. Laurdan microscopy provides a unique tool to assess this property in heterogeneous biological membranes. This review describes the general principles of the approach and its application in model membranes and cells. It also provides an in-depth discussion of the insights obtained using Laurdan microscopy to evaluate the differential effects of cholesterol, oxysterols and oxidized phospholipids on lipid packing of ordered and disordered domains in vascular endothelial cells.

不同脂质对膜结构/脂质顺序的影响对多种生物过程至关重要。劳氏显微镜提供了一个独特的工具来评估这种性质在异质生物膜。本文综述了该方法的一般原理及其在模型膜和细胞中的应用。它还提供了一个深入的讨论,利用Laurdan显微镜来评估胆固醇、氧化甾醇和氧化磷脂对血管内皮细胞中有序和无序结构域的脂质堆积的不同影响。
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引用次数: 2
Fluorescence sensors for imaging membrane lipid domains and cholesterol. 荧光传感器成像膜脂结构域和胆固醇。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 Epub Date: 2021-10-20 DOI: 10.1016/bs.ctm.2021.09.004
Francisco J Barrantes

Lipid membrane domains are supramolecular lateral heterogeneities of biological membranes. Of nanoscopic dimensions, they constitute specialized hubs used by the cell as transient signaling platforms for a great variety of biologically important mechanisms. Their property to form and dissolve in the bulk lipid bilayer endow them with the ability to engage in highly dynamic processes, and temporarily recruit subpopulations of membrane proteins in reduced nanometric compartments that can coalesce to form larger mesoscale assemblies. Cholesterol is an essential component of these lipid domains; its unique molecular structure is suitable for interacting intricately with crevices and cavities of transmembrane protein surfaces through its rough β face while "talking" to fatty acid acyl chains of glycerophospholipids and sphingolipids via its smooth α face. Progress in the field of membrane domains has been closely associated with innovative improvements in fluorescence microscopy and new fluorescence sensors. These advances enabled the exploration of the biophysical properties of lipids and their supramolecular platforms. Here I review the rationale behind the use of biosensors over the last few decades and their contributions towards elucidation of the in-plane and transbilayer topography of cholesterol-enriched lipid domains and their molecular constituents. The challenges introduced by super-resolution optical microscopy are discussed, as well as possible scenarios for future developments in the field, including virtual ("no staining") staining.

脂质膜结构域是生物膜的超分子横向异质性。在纳米尺度上,它们构成了细胞的专门枢纽,作为多种重要生物学机制的瞬态信号平台。它们在大体积脂质双分子层中形成和溶解的特性赋予了它们参与高动态过程的能力,并在缩小的纳米隔室中暂时招募膜蛋白亚群,这些隔室可以合并形成更大的中尺度组装。胆固醇是这些脂质结构域的重要组成部分;其独特的分子结构适合于通过其粗糙的β面与跨膜蛋白表面的裂缝和空洞相互作用,同时通过其光滑的α面与甘油磷脂和鞘脂的脂肪酸酰基链“对话”。膜结构域领域的进展与荧光显微镜和新型荧光传感器的创新改进密切相关。这些进展使探索脂质及其超分子平台的生物物理特性成为可能。在这里,我回顾了生物传感器在过去几十年使用背后的基本原理,以及它们对阐明富含胆固醇的脂质结构域及其分子成分的平面内和跨双层地形的贡献。讨论了超分辨率光学显微镜带来的挑战,以及该领域未来发展的可能情况,包括虚拟(“无染色”)染色。
{"title":"Fluorescence sensors for imaging membrane lipid domains and cholesterol.","authors":"Francisco J Barrantes","doi":"10.1016/bs.ctm.2021.09.004","DOIUrl":"https://doi.org/10.1016/bs.ctm.2021.09.004","url":null,"abstract":"<p><p>Lipid membrane domains are supramolecular lateral heterogeneities of biological membranes. Of nanoscopic dimensions, they constitute specialized hubs used by the cell as transient signaling platforms for a great variety of biologically important mechanisms. Their property to form and dissolve in the bulk lipid bilayer endow them with the ability to engage in highly dynamic processes, and temporarily recruit subpopulations of membrane proteins in reduced nanometric compartments that can coalesce to form larger mesoscale assemblies. Cholesterol is an essential component of these lipid domains; its unique molecular structure is suitable for interacting intricately with crevices and cavities of transmembrane protein surfaces through its rough β face while \"talking\" to fatty acid acyl chains of glycerophospholipids and sphingolipids via its smooth α face. Progress in the field of membrane domains has been closely associated with innovative improvements in fluorescence microscopy and new fluorescence sensors. These advances enabled the exploration of the biophysical properties of lipids and their supramolecular platforms. Here I review the rationale behind the use of biosensors over the last few decades and their contributions towards elucidation of the in-plane and transbilayer topography of cholesterol-enriched lipid domains and their molecular constituents. The challenges introduced by super-resolution optical microscopy are discussed, as well as possible scenarios for future developments in the field, including virtual (\"no staining\") staining.</p>","PeriodicalId":11029,"journal":{"name":"Current topics in membranes","volume":" ","pages":"257-314"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39943089","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Investigating molecular crowding during cell division and hyperosmotic stress in budding yeast with FRET. 用FRET研究出芽酵母细胞分裂和高渗胁迫过程中的分子拥挤。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 Epub Date: 2021-11-16 DOI: 10.1016/bs.ctm.2021.09.001
Sarah Lecinski, Jack W Shepherd, Lewis Frame, Imogen Hayton, Chris MacDonald, Mark C Leake

Cell division, aging, and stress recovery triggers spatial reorganization of cellular components in the cytoplasm, including membrane bound organelles, with molecular changes in their compositions and structures. However, it is not clear how these events are coordinated and how they integrate with regulation of molecular crowding. We use the budding yeast Saccharomyces cerevisiae as a model system to study these questions using recent progress in optical fluorescence microscopy and crowding sensing probe technology. We used a Förster Resonance Energy Transfer (FRET) based sensor, illuminated by confocal microscopy for high throughput analyses and Slimfield microscopy for single-molecule resolution, to quantify molecular crowding. We determine crowding in response to cellular growth of both mother and daughter cells, in addition to osmotic stress, and reveal hot spots of crowding across the bud neck in the burgeoning daughter cell. This crowding might be rationalized by the packing of inherited material, like the vacuole, from mother cells. We discuss recent advances in understanding the role of crowding in cellular regulation and key current challenges and conclude by presenting our recent advances in optimizing FRET-based measurements of crowding while simultaneously imaging a third color, which can be used as a marker that labels organelle membranes. Our approaches can be combined with synchronized cell populations to increase experimental throughput and correlate molecular crowding information with different stages in the cell cycle.

细胞分裂、衰老和应激恢复触发细胞质中细胞成分的空间重组,包括膜结合细胞器,其分子组成和结构发生变化。然而,目前尚不清楚这些事件是如何协调的,以及它们如何与分子拥挤的调节相结合。本文以出芽酵母酿酒酵母为模型系统,利用光学荧光显微镜和拥挤传感探针技术的最新进展对这些问题进行了研究。我们使用Förster共振能量转移(FRET)为基础的传感器,共聚焦显微镜照射高通量分析和细场显微镜单分子分辨率,量化分子拥挤。除了渗透胁迫外,我们还确定了母细胞和子细胞细胞生长时的拥挤反应,并揭示了在萌芽中的子细胞芽颈上拥挤的热点。这种拥挤可能是由于来自母细胞的遗传物质(如液泡)的堆积而形成的。我们讨论了在理解拥挤在细胞调节中的作用方面的最新进展和当前的关键挑战,最后介绍了我们在优化基于fret的拥挤测量方面的最新进展,同时成像第三种颜色,它可以用作标记细胞器膜的标记。我们的方法可以与同步细胞群相结合,以增加实验吞吐量,并将分子拥挤信息与细胞周期的不同阶段相关联。
{"title":"Investigating molecular crowding during cell division and hyperosmotic stress in budding yeast with FRET.","authors":"Sarah Lecinski, Jack W Shepherd, Lewis Frame, Imogen Hayton, Chris MacDonald, Mark C Leake","doi":"10.1016/bs.ctm.2021.09.001","DOIUrl":"10.1016/bs.ctm.2021.09.001","url":null,"abstract":"<p><p>Cell division, aging, and stress recovery triggers spatial reorganization of cellular components in the cytoplasm, including membrane bound organelles, with molecular changes in their compositions and structures. However, it is not clear how these events are coordinated and how they integrate with regulation of molecular crowding. We use the budding yeast Saccharomyces cerevisiae as a model system to study these questions using recent progress in optical fluorescence microscopy and crowding sensing probe technology. We used a Förster Resonance Energy Transfer (FRET) based sensor, illuminated by confocal microscopy for high throughput analyses and Slimfield microscopy for single-molecule resolution, to quantify molecular crowding. We determine crowding in response to cellular growth of both mother and daughter cells, in addition to osmotic stress, and reveal hot spots of crowding across the bud neck in the burgeoning daughter cell. This crowding might be rationalized by the packing of inherited material, like the vacuole, from mother cells. We discuss recent advances in understanding the role of crowding in cellular regulation and key current challenges and conclude by presenting our recent advances in optimizing FRET-based measurements of crowding while simultaneously imaging a third color, which can be used as a marker that labels organelle membranes. Our approaches can be combined with synchronized cell populations to increase experimental throughput and correlate molecular crowding information with different stages in the cell cycle.</p>","PeriodicalId":11029,"journal":{"name":"Current topics in membranes","volume":" ","pages":"75-118"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7612257/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39943093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Membrane tension. 膜张力。
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 Epub Date: 2021-11-02 DOI: 10.1016/bs.ctm.2021.09.002
Pei-Chuan Chao, Frederick Sachs

The cell membrane serves as a barrier that restricts the rate of exchange of diffusible molecules. Tension in the membrane regulates many crucial cell functions involving shape changes and motility, cell signaling, endocytosis, and mechanosensation. Tension reflects the forces contributed by the lipid bilayer, the cytoskeleton, and the extracellular matrix. With a fluid-like bilayer model, membrane tension is presumed uniform and hence propagated instantaneously. In this review, we discuss techniques to measure the mean membrane tension and how to resolve the stresses in different components and consider the role of bilayer heterogeneity.

细胞膜起屏障作用,限制可扩散分子的交换速率。膜张力调节许多重要的细胞功能,包括形状变化和运动、细胞信号、内吞作用和机械感觉。张力反映了脂质双分子层、细胞骨架和细胞外基质所产生的力。在类流体双层模型中,膜张力被认为是均匀的,因此是瞬时传播的。在这篇综述中,我们讨论了测量平均膜张力的技术,以及如何解决不同组分的应力,并考虑了双层非均质性的作用。
{"title":"Membrane tension.","authors":"Pei-Chuan Chao,&nbsp;Frederick Sachs","doi":"10.1016/bs.ctm.2021.09.002","DOIUrl":"https://doi.org/10.1016/bs.ctm.2021.09.002","url":null,"abstract":"<p><p>The cell membrane serves as a barrier that restricts the rate of exchange of diffusible molecules. Tension in the membrane regulates many crucial cell functions involving shape changes and motility, cell signaling, endocytosis, and mechanosensation. Tension reflects the forces contributed by the lipid bilayer, the cytoskeleton, and the extracellular matrix. With a fluid-like bilayer model, membrane tension is presumed uniform and hence propagated instantaneously. In this review, we discuss techniques to measure the mean membrane tension and how to resolve the stresses in different components and consider the role of bilayer heterogeneity.</p>","PeriodicalId":11029,"journal":{"name":"Current topics in membranes","volume":" ","pages":"189-203"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39690562","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
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Current topics in membranes
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