Homology in vertebrate body plans is traditionally ascribed to the high‐level conservation of regulatory components within the genetic programs governing them, particularly during the “phylotypic stage.” However, advancements in embryology and molecular phylogeny have unveiled the dynamic nature of gene repertoires responsible for early development. Notably, the Nodal and Lefty genes, members of the transforming growth factor‐beta superfamily producing intercellular signaling molecules and crucial for left–right (L‐R) symmetry breaking, exhibit distinctive features within their gene repertoires. These features encompass among‐species gene repertoire variations resulting from gene gain and loss, as well as gene conversion. Despite their significance, these features have been largely unexplored in a phylogenetic context, but accumulating genome‐wide sequence information is allowing the scrutiny of these features. It has exposed hidden paralogy between Nodal1 and Nodal2 genes resulting from differential gene loss in amniotes. In parallel, the tandem cluster of Lefty1 and Lefty2 genes, which was thought to be confined to mammals, is observed in sharks and rays, with an unexpected phylogenetic pattern. This article provides a comprehensive review of the current understanding of the origins of these vertebrate gene repertoires and proposes a revised nomenclature based on the elucidated history of vertebrate genome evolution.
{"title":"Enigmatic Nodal and Lefty gene repertoire discrepancy: Latent evolutionary history revealed by vertebrate‐wide phylogeny","authors":"Shigehiro Kuraku","doi":"10.1002/dvdy.710","DOIUrl":"https://doi.org/10.1002/dvdy.710","url":null,"abstract":"Homology in vertebrate body plans is traditionally ascribed to the high‐level conservation of regulatory components within the genetic programs governing them, particularly during the “phylotypic stage.” However, advancements in embryology and molecular phylogeny have unveiled the dynamic nature of gene repertoires responsible for early development. Notably, the <jats:italic>Nodal</jats:italic> and <jats:italic>Lefty</jats:italic> genes, members of the transforming growth factor‐beta superfamily producing intercellular signaling molecules and crucial for left–right (L‐R) symmetry breaking, exhibit distinctive features within their gene repertoires. These features encompass among‐species gene repertoire variations resulting from gene gain and loss, as well as gene conversion. Despite their significance, these features have been largely unexplored in a phylogenetic context, but accumulating genome‐wide sequence information is allowing the scrutiny of these features. It has exposed hidden paralogy between <jats:italic>Nodal1</jats:italic> and <jats:italic>Nodal2</jats:italic> genes resulting from differential gene loss in amniotes. In parallel, the tandem cluster of <jats:italic>Lefty1</jats:italic> and <jats:italic>Lefty2</jats:italic> genes, which was thought to be confined to mammals, is observed in sharks and rays, with an unexpected phylogenetic pattern. This article provides a comprehensive review of the current understanding of the origins of these vertebrate gene repertoires and proposes a revised nomenclature based on the elucidated history of vertebrate genome evolution.","PeriodicalId":11247,"journal":{"name":"Developmental Dynamics","volume":"38 1","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140635653","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
<p>Every organism is a model organism for understanding development, evolution, disease, and regeneration, and we have only begun to scratch the surface of the interdisciplinary genetic, molecular, cellular, and developmental mechanisms that regulate these biological processes. These “Highlights” denote exciting advances recently reported in <i>Developmental Dynamics</i> that illustrate the complex dynamics of developmental biology.</p><p><b>Sensory Development</b>. “Rspo1 and Rspo3 are required for sensory lineage neural crest formation in mouse embryos” by Takuma Shinozuka, Motoko Aoki, Yudai Hatakeyama, Noriaki Sasai, Hiroshi Okamoto, and Shinji Takada; <i>Dev Dyn</i> 253:4, pp. 435–446. https://doi.org/10.1002/dvdy.659. Wnt/β-catenin signaling plays multiple critical roles during embryonic development and throughout adult homeostasis, and R-spondins (Rspos) are secreted proteins that modulate Wnt/β-catenin signaling. This study documented the expression of all four <i>Rspo</i> genes in the developing mouse spinal cord and found that <i>Rspo1</i> and <i>Rspo3</i> are specifically expressed in the roof plate from E9.5 to E18.5. To functionally test for the roles of <i>Rspo1</i> and <i>Rspo3</i> in the developing spinal cord, the authors generated mutant embryos defective in either or both of these Rspos. <i>Rspo1</i>-KO and <i>Rspo3</i>-cKO double-mutant embryos displayed defects in specification of Ngn2-positive sensory lineage cells. The results show that although <i>Rspo1</i> and <i>Rspo3</i> are dispensable for most developmental processes involving roof plate-derived Wnt ligands, they are critically required for specification of a subtype of neural crest cells. Thus, Rspos modulate Wnt/β-catenin signaling in a context-dependent manner.</p><p><b>Axial Development and Elongation</b>. “Specific CaMKIIs mediate convergent extension cell movements in early zebrafish development” by Jamie McLeod, Sarah Rothschild, Ludmila Francescatto, Haerin Kim, and Robert Tombes; <i>Dev Dyn</i> 253:4, pp. 390–403. https://doi.org/10.1002/dvdy.665. Coordinated inductive and morphogenetic processes establish the vertebrate body plan during gastrulation. Central to this process is convergent extension which narrows the germ layers mediolaterally (convergence) while elongating them anterioposteriorly (extension). Non-canonical Wnts are morphogens that can elevate intracellular Ca<sup>2+</sup> and activate the Ca<sup>2+</sup>/calmodulin-dependent protein kinase, CaMKII, and promote convergent extension cell movements during vertebrate gastrulation. In this study, the authors demonstrate that zebrafish embryos spatiotemporally express seven CaMKII genes during embryogenesis, two of which camk2b1 and camk2g1, are necessary for convergent extension cell movements. Interestingly, overexpression of CaMKII partially rescued Wnt11 morphant convergent extension phenotypes. Therefore, cyclically activated CaMKII encoded from two genes enables cell migration during the proc
{"title":"Editorial highlights","authors":"Paul A. Trainor","doi":"10.1002/dvdy.709","DOIUrl":"https://doi.org/10.1002/dvdy.709","url":null,"abstract":"<p>Every organism is a model organism for understanding development, evolution, disease, and regeneration, and we have only begun to scratch the surface of the interdisciplinary genetic, molecular, cellular, and developmental mechanisms that regulate these biological processes. These “Highlights” denote exciting advances recently reported in <i>Developmental Dynamics</i> that illustrate the complex dynamics of developmental biology.</p><p><b>Sensory Development</b>. “Rspo1 and Rspo3 are required for sensory lineage neural crest formation in mouse embryos” by Takuma Shinozuka, Motoko Aoki, Yudai Hatakeyama, Noriaki Sasai, Hiroshi Okamoto, and Shinji Takada; <i>Dev Dyn</i> 253:4, pp. 435–446. https://doi.org/10.1002/dvdy.659. Wnt/β-catenin signaling plays multiple critical roles during embryonic development and throughout adult homeostasis, and R-spondins (Rspos) are secreted proteins that modulate Wnt/β-catenin signaling. This study documented the expression of all four <i>Rspo</i> genes in the developing mouse spinal cord and found that <i>Rspo1</i> and <i>Rspo3</i> are specifically expressed in the roof plate from E9.5 to E18.5. To functionally test for the roles of <i>Rspo1</i> and <i>Rspo3</i> in the developing spinal cord, the authors generated mutant embryos defective in either or both of these Rspos. <i>Rspo1</i>-KO and <i>Rspo3</i>-cKO double-mutant embryos displayed defects in specification of Ngn2-positive sensory lineage cells. The results show that although <i>Rspo1</i> and <i>Rspo3</i> are dispensable for most developmental processes involving roof plate-derived Wnt ligands, they are critically required for specification of a subtype of neural crest cells. Thus, Rspos modulate Wnt/β-catenin signaling in a context-dependent manner.</p><p><b>Axial Development and Elongation</b>. “Specific CaMKIIs mediate convergent extension cell movements in early zebrafish development” by Jamie McLeod, Sarah Rothschild, Ludmila Francescatto, Haerin Kim, and Robert Tombes; <i>Dev Dyn</i> 253:4, pp. 390–403. https://doi.org/10.1002/dvdy.665. Coordinated inductive and morphogenetic processes establish the vertebrate body plan during gastrulation. Central to this process is convergent extension which narrows the germ layers mediolaterally (convergence) while elongating them anterioposteriorly (extension). Non-canonical Wnts are morphogens that can elevate intracellular Ca<sup>2+</sup> and activate the Ca<sup>2+</sup>/calmodulin-dependent protein kinase, CaMKII, and promote convergent extension cell movements during vertebrate gastrulation. In this study, the authors demonstrate that zebrafish embryos spatiotemporally express seven CaMKII genes during embryogenesis, two of which camk2b1 and camk2g1, are necessary for convergent extension cell movements. Interestingly, overexpression of CaMKII partially rescued Wnt11 morphant convergent extension phenotypes. Therefore, cyclically activated CaMKII encoded from two genes enables cell migration during the proc","PeriodicalId":11247,"journal":{"name":"Developmental Dynamics","volume":"253 4","pages":"368-369"},"PeriodicalIF":2.5,"publicationDate":"2024-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/dvdy.709","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140333184","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}