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Shimia fortis sp. nov., Isolated from Marine Sediment. 从海洋沉积物中分离出的石斑鱼。
IF 2.6 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2026-01-19 DOI: 10.1007/s00284-025-04686-0
Xiao-Yu Dong, Pei-Ran Lin, Xin-Yun Tan, Jia-Qi Li, Zong-Jun Du, Meng-Qi Ye
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引用次数: 0
Investigation of the Fermentation Characteristics of Yeast in the Natural Fermentation Solution Derived from Passiflora edulis Sims. 酵母在西番莲天然发酵液中的发酵特性研究。
IF 2.6 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2026-01-19 DOI: 10.1007/s00284-026-04730-7
Ying Mao, Tian-Qian Zhou, Xu Bai, Qing-Fang Xu, Xiu Gao, Yu-Peng Liang, Ya-Lan Zhao, Jian Cai, Ling Zhu

Passiflora edulis (P. edulis Sims) is prevalent in tropical regions, and its distinctive taste and aroma are highly appreciated due to its unique nutritional profile. With the increasing recognition of the added value of P. edulis Sims wine, an expanding number of researchers have begun to focus on the related studies concerning the brewing process of this wine. Isolating high-quality yeast strains from the natural fermentation broth of P. edulis Sims is crucial for this purpose. In this study, 38 yeast strains were isolated and purified from the fermentation broth of P. edulis Sims. Nine yeast strains were selected using WL medium for further analysis. The fermentation characteristics of these strains were evaluated based on their production of esters, ethanol, and hydrogen sulfide (H2S), as well as through tolerance tests. The results indicated that the nine yeast strains exhibited favorable fermentation performance characterized by low H2S production while demonstrating high levels of ester and ethanol production, along with certain antimicrobial activity. Among these strains, GZH-20 displayed a notably low capacity for H2S production coupled with exceptional abilities in both ester and ethanol generation. Furthermore, this strain demonstrated good tolerance under various conditions, including pH levels ranging from 2.8 to 3.8, a glucose concentration of 200 g/L, and varying sulfur dioxide (SO2) concentrations between 60 g/L and 360 g/L; it showed superior capacities for producing esters and ethanol under these conditions. Molecular identification confirmed that this strain is classified as Wickerhamomyces anomalus. These findings hold significant implications for advancing our understanding of specialized yeasts involved in P. edulis Sims wine production.

西番莲(P. edulis Sims)普遍存在于热带地区,由于其独特的营养成分,其独特的味道和香气受到高度赞赏。随着越来越多的人认识到葡萄酒的附加值,越来越多的研究人员开始关注葡萄酒酿造过程的相关研究。从天然发酵液中分离出高质量的酵母菌株对于这一目的至关重要。本研究从黄颡鱼发酵液中分离纯化了38株酵母菌。用WL培养基筛选9株酵母菌进行进一步分析。根据这些菌株的酯、乙醇和硫化氢(H2S)的产量以及耐受性试验来评估这些菌株的发酵特性。结果表明,9株酵母菌均表现出较好的发酵性能,产氢量低,酯和乙醇产量高,并具有一定的抑菌活性。在这些菌株中,GZH-20对H2S的生产能力明显较低,但对酯和乙醇的生产能力都很出色。此外,该菌株在pH值为2.8 ~ 3.8、葡萄糖浓度为200 g/L、二氧化硫(SO2)浓度为60 ~ 360 g/L等条件下均表现出良好的耐受性;在此条件下,它具有较好的产酯和乙醇的能力。分子鉴定证实该菌株属Wickerhamomyces anomalus。这些发现对于促进我们对P. edulis Sims葡萄酒生产中涉及的专业酵母的理解具有重要意义。
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引用次数: 0
Genetically Encoded Near-Infrared Fluorescent Proteins for Viral Imaging and Detection: A Mini-Review. 基因编码近红外荧光蛋白用于病毒成像和检测:一个小综述。
IF 2.6 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2026-01-19 DOI: 10.1007/s00284-026-04729-0
Fakhrul Hassan, Abbas Khan, Muhammad Suleman, Faez Iqbal Khan, Ijaz Gul

Bacteriophytochrome-derived near-infrared fluorescent proteins (NIR FPs) provide deep tissue penetration, low autofluorescence, and endogenous biliverdin compatibility, enabling non-invasive visualization of viral processes in living systems. Engineering advances (iRFPs, monomeric miRFPs, photoactivatable PAiRFPs) have improved brightness, stability, and genetic encodability for robust use in mammalian models. These reporters support real-time tracking of infection dynamics and host-virus interactions and power diagnostic platforms including reporter viruses, CRISPR-based assays, and nanotechnology-enhanced biosensors. Multimodal integration with photoacoustic tomography and PET further extends their translational utility. Remaining challenges include brightness/photostability limits and the need for broader translational validation, yet progress in structure-guided mutagenesis, computational/AI-assisted protein design, and hybrid imaging strategies promises to close these gaps. This mini-review synthesizes the design principles, viral imaging/detection use cases, and translational prospects of bacteriophytochrome-derived NIR FPs, highlighting their potential to advance viral surveillance, therapeutic evaluation, and precision diagnostics.

细菌色素衍生的近红外荧光蛋白(NIR FPs)具有深层组织穿透性、低自身荧光性和内源性胆绿素兼容性,能够对生命系统中的病毒过程进行无创可视化。工程上的进步(iRFPs、单体miRFPs、光激活PAiRFPs)提高了亮度、稳定性和遗传可编码性,可用于哺乳动物模型。这些报告器支持实时跟踪感染动态和宿主-病毒相互作用,并为报告病毒、基于crispr的检测和纳米技术增强的生物传感器等诊断平台提供动力。与光声断层成像和PET的多模态集成进一步扩展了它们的平移效用。剩下的挑战包括亮度/光稳定性限制和对更广泛的转化验证的需求,但结构引导诱变、计算/人工智能辅助蛋白质设计和混合成像策略的进展有望缩小这些差距。这篇小型综述综合了细菌色素衍生的近红外FPs的设计原理、病毒成像/检测用例和转化前景,强调了它们在推进病毒监测、治疗评估和精确诊断方面的潜力。
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引用次数: 0
Metagenomic Insights into Viral Diversity from an Underexplored Khazan Creek and a Tropical Freshwater Lake. 从未充分开发的卡赞河和热带淡水湖的病毒多样性的宏基因组学见解。
IF 2.6 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2026-01-18 DOI: 10.1007/s00284-026-04724-5
Judith M Noronha, Shenu B Hudson, Gaurav Sharma, Sanjeev C Ghadi

The virus communities of inland aquatic ecosystems have typically received less attention from the research perspective than those of marine ecosystems. In this study, we compared the viromes of an estuarine creek (Santana Creek) belonging to the khazan ecosystem and an agriculturally relevant freshwater lake (Verna Lake), both located in Goa, India. Taxonomically, the viral realm Duplodnaviria predominated in both the lake and creek communities, Varidnaviria had a minor presence in both, and Monodnaviria was exclusively present in the lake community. Sequences identified in the creek virome bore a greater resemblance to those of marine ecosystems than those in the lake virome. Functional annotation confirmed the taxonomic findings, indicating most proteins were involved in the infective and replicative functions of bacteriophages. Predicted complete viral genomes included those of Synechococcus and Proteus phages in the creek dataset, and of Gokushovirinae phages in the lake dataset. Viral communities of the khazan ecosystem and similar ecosystems worldwide are understudied, and hence the present virome analysis offers a valuable reference for further studies on these ecosystems.

从研究角度来看,内陆水生生态系统的病毒群落受到的关注通常少于海洋生态系统。在这项研究中,我们比较了属于卡扎生态系统的河口溪(桑塔纳溪)和农业相关的淡水湖(维尔纳湖)的病毒组,两者都位于印度果阿邦。在分类学上,湖泊群落和小溪群落中均以病毒领域Duplodnaviria占优势,Varidnaviria在两者中均有少量存在,而Monodnaviria仅在湖泊群落中存在。在小溪病毒群中发现的序列与海洋生态系统的序列比在湖泊病毒群中发现的序列更相似。功能注释证实了分类学上的发现,表明大多数蛋白质参与了噬菌体的感染和复制功能。预测的完整病毒基因组包括creek数据集中的聚球菌(Synechococcus)和Proteus噬菌体,以及lake数据集中的Gokushovirinae噬菌体。目前,国内外对可赞生态系统和类似生态系统的病毒群落研究尚不充分,病毒组分析为进一步研究可赞生态系统提供了有价值的参考。
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引用次数: 0
One Novel Hyphodiscosia Species From Litchi Litter in China with Insights into Host Associations and Geographic Distribution of Muyocopronaceae (Muyocopronales, Dothideomycetes). 中国荔枝凋落物中一种新菌种及其寄主关联和地理分布的研究
IF 2.6 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2026-01-16 DOI: 10.1007/s00284-026-04720-9
Yun-Hui Yang, Chun-Fang Liao, Kevin David Hyde, Ishara Sandeepani Manawasinghe, Eric Mckenzie, Fatmah Al-Otibi, Chitrabhanu Sharma Bhunjun, Pattana Kakumyan
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引用次数: 0
First Report of Aspergillus aculeatus Colonizing Protaetia brevitarsis Larvae: Pathogenicity and Dose-Dependent Virulence. 刺曲霉定殖短白弧菌幼虫:致病性和剂量依赖性毒力的首次报道。
IF 2.6 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2026-01-16 DOI: 10.1007/s00284-026-04727-2
Haokun Cheng, Jialin Qiu, Muhammad Adeel Ghafar, Talim Hussain, Shimin Wang, Ritu Raj Poudyal, Liuyang Lu, Qin Feng, Liande Wang

Widespread chemical pesticide use in agriculture threatens environmental and human health, creating urgent demand for sustainable alternatives like entomopathogenic fungi. However, effective entomopathogenic fungi for Protaetia brevitarsis remain scarce. This study first isolated and identified the Aspergillus aculeatus strain JBQM-1 from naturally infected P. brevitarsis larvae. Its identity was confirmed via morphological analysis, ITS rDNA sequencing, and calmodulin gene phylogeny. The calmodulin gene was used to address the limitation of ITS alone in distinguishing closely related Aspergillus species, ensuring accurate identification. JBQM-1 spores showed time-dependent germination in potato dextrose broth(PDB)medium, reaching 96.75% by 8 h. This rapid germination is key to timely host infection, supporting its biocontrol potential. Pathogenicity assays revealed JBQM-1's dose- and time-dependent virulence: 71% larval mortality at 1.0 × 10⁹ conidia per milliliter by day 7, with no mortality in the first 48 h. A heat-inactivated control assay was conducted to rule out non-infectious factors. The heat-inactivated group had 6.67 ± 3.34% mortality, which was not statistically different from the control group's 4.44 ± 1.92% mortality. No hyphal outgrowth was observed on dead larvae from the heat-inactivated group after 72 h incubation in moist chambers. This confirms JBQM-1's high virulence, expands A. aculeatus' host range, and highlights its potential as a biocontrol agent, providing new microbial resources for sustainable pest control.

农业中化学农药的广泛使用威胁着环境和人类健康,迫切需要昆虫病原真菌等可持续替代品。然而,有效的昆虫病原真菌短白原菌仍然稀缺。本研究首次从自然感染的短维螺旋体幼虫中分离鉴定了针孔曲霉菌株JBQM-1。通过形态学分析、Its rDNA测序和钙调素基因系统发育证实了其身份。利用钙调素基因解决了ITS在区分近缘曲霉种方面的局限性,保证了鉴定的准确性。JBQM-1孢子在马铃薯葡萄糖肉汤(PDB)培养基中萌发具有时间依赖性,8 h萌发率可达96.75%,这种快速萌发是及时侵染宿主的关键,支持了其生物防治潜力。致病性分析显示,JBQM-1具有剂量和时间依赖性的毒力:在1.0 × 10孢子/毫升条件下,第7天幼虫死亡率为71%,前48 h无死亡。采用热灭活对照试验排除非感染因素。热灭活组病死率为6.67±3.34%,与对照组(4.44±1.92%)差异无统计学意义。热灭活组死幼虫在湿室孵育72 h后未见菌丝生长。这证实了JBQM-1的高毒力,扩大了白僵虱的寄主范围,突出了其作为生物防治剂的潜力,为害虫的可持续防治提供了新的微生物资源。
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引用次数: 0
Molecular Kaleidoscope of Nucleoid-Associated Proteins Regulatory Network and Chromosome Architecture in Mycobacterium Tuberculosis. 结核分枝杆菌核相关蛋白调控网络和染色体结构的分子万花筒。
IF 2.6 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2026-01-14 DOI: 10.1007/s00284-025-04716-x
Debasree Basu Mukherjee, Sharadamma Narayanaswamy, Nagesh Babu Rangappa
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引用次数: 0
Isolation and Characterization of Native Plant Growth-Promoting Rhizobacteria from Organic Cassava Fields in Thailand: Pantoea dispersa Enhances Cassava Growth. 泰国有机木薯田原生植物促生根瘤菌的分离与鉴定:泛菌分散促进木薯生长
IF 2.6 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2026-01-14 DOI: 10.1007/s00284-025-04702-3
Kanapol Ketjarun, Juthamas Chaiwanon, Alisa Vangnai, Pawara Pachit, Jittra Piapukiew
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引用次数: 0
Exploring Antimicrobial Activity of Neowestiellopsis persica Metabolites Through in Vitro and in Silico Approach. 通过体外和硅法研究巴西新蜂代谢物的抑菌活性。
IF 2.6 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2026-01-13 DOI: 10.1007/s00284-025-04639-7
Dapboklang Rynjah, David W Lamare, Bishal Pun, Jayanti D Roy, Santa R Joshi, Neha Chaurasia

The present study investigates the antibacterial potential of fatty acid methyl esters (FAMEs) from the cyanobacterial species Neowestiellopsis persica, isolated from Meghalaya, a north-eastern state in India. Given the growing threat of antibiotic resistance, this study explores an alternative source of bioactive compounds from cyanobacteria to combat bacterial pathogens such as Escherichia coli, Klebsiella pneumoniae, and Staphylococcus aureus. The cyanobacterial species Neowestiellopsis persica was cultured under controlled laboratory conditions, followed by the extraction of fatty acid methyl esters (FAMEs). The extract was then screened for antimicrobial activity using Kirby-Bauer disc diffusion assays, demonstrating significant inhibition of bacterial growth, particularly against Staphylococcus aureus with a zone of inhibition of 22 ± 1 mm. Minimum inhibitory concentration (MIC) tests further supported the antibacterial efficacy of the extract with Staphylococcus aureus and Klebsiella pneumoniae exhibiting the lowest minimum inhibitory concentrations of 2.5 ± 0 mg/mL. Gas chromatography-mass spectrometry (GC-MS) analysis identified four key bioactive compounds which were subsequently evaluated through in silico molecular docking studies. The docking results revealed promising interactions between the bioactive compounds notably heptacosanoic acid, 25-methyl,-methyl ester with PBP2a protein of Staphylococcus aureus with the lowest binding energy of -6.49 ± 0.560 kcal/mol, suggesting potential for developing new antimicrobial agents. Additionally, the drug-likeness and toxicity of the compounds were assessed using in silico tools, supporting the potential for these compounds as viable candidates for future antibacterial drug development.

本研究调查了从印度东北部梅加拉亚邦分离的蓝藻物种Neowestiellopsis persica中提取的脂肪酸甲酯(FAMEs)的抗菌潜力。鉴于抗生素耐药性日益增长的威胁,本研究探索了从蓝藻中提取生物活性化合物的替代来源,以对抗细菌病原体,如大肠杆菌、肺炎克雷伯菌和金黄色葡萄球菌。在控制的实验室条件下培养蓝藻新芽(Neowestiellopsis persica),提取脂肪酸甲酯(FAMEs)。然后用Kirby-Bauer圆盘扩散试验筛选提取物的抗菌活性,显示出显著的细菌生长抑制作用,特别是对金黄色葡萄球菌的抑制区为22±1 mm。最低抑菌浓度(MIC)试验进一步支持了提取物对金黄色葡萄球菌和肺炎克雷伯菌的抑菌作用,最低抑菌浓度为2.5±0 mg/mL。气相色谱-质谱(GC-MS)分析确定了四种关键的生物活性化合物,随后通过硅分子对接研究对其进行了评估。对接结果显示,活性化合物与金黄色葡萄球菌PBP2a蛋白的相互作用前景良好,结合能最低,为-6.49±0.560 kcal/mol,具有开发新型抗菌药物的潜力。此外,使用硅工具评估了化合物的药物相似性和毒性,支持这些化合物作为未来抗菌药物开发的可行候选物的潜力。
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引用次数: 0
Optimizing Magnesium Uptake in Lacticaseibacillus Rhamnosus To Advance Nutribiotic Strategies. 优化鼠李糖乳杆菌对镁的吸收,推进营养生物学策略。
IF 2.6 3区 生物学 Q3 MICROBIOLOGY Pub Date : 2026-01-12 DOI: 10.1007/s00284-026-04721-8
Rodica-Anita Varvara, Heike Budde, Ruth Ley, Dan Cristian Vodnar

Magnesium is an essential mineral involved in more than 300 enzymatic reactions, including protein synthesis, neuromuscular function, and blood pressure regulation. Recent studies have highlighted the role of probiotics, beneficial microorganisms in the human gut, in enhancing mineral absorption. However, the interaction between magnesium and probiotic strains remains poorly understood. This study aimed to investigate the capacity of Lacticaseibacillus rhamnosus ATCC 53,103 to uptake and internalize magnesium ions, using MgSO₄ as a supplementation source. The bacterium was cultivated in MRS medium with varying concentrations of MgSO₄ (0, 0.1444, 0.722, and 1.444 g/L) over seven days. Quantitative analysis revealed that at 0.722 g/L MgSO₄, intracellular magnesium accumulation peaked at 0.7 mg/dL by Day 3, representing a 7-fold increase compared to the control (0.1 mg/dL). Scanning and transmission electron microscopy indicated essential morphological changes, including ruffled cell surfaces and enhanced ribosomal visibility. These findings suggest that L. rhamnosus can internalize magnesium under enriched conditions, supporting its potential as a microbial carrier for nutribiotic applications. This work contributes to the growing field of mineral-microbe interactions and may inform the development of probiotic-based strategies to improve magnesium bioaccessibility in the human gut.

镁是一种必需的矿物质,参与300多种酶促反应,包括蛋白质合成、神经肌肉功能和血压调节。最近的研究强调了益生菌,人体肠道中的有益微生物,在促进矿物质吸收方面的作用。然而,镁和益生菌菌株之间的相互作用仍然知之甚少。本研究以硫酸镁为补充源,研究鼠李糖乳杆菌ATCC 53103对镁离子的吸收和内化能力。细菌在含有不同浓度硫酸镁(0、0.1444、0.722和1.444 g/L)的MRS培养基中培养7天。定量分析显示,当mgso4浓度为0.722 g/L时,细胞内镁积累在第3天达到0.7 mg/dL的峰值,比对照组(0.1 mg/dL)增加了7倍。扫描电镜和透射电镜显示基本形态学改变,包括细胞表面皱褶和核糖体可见性增强。这些发现表明,鼠李糖在富集条件下可以内化镁,支持其作为营养微生物载体的潜力。这项工作有助于矿物-微生物相互作用领域的发展,并可能为基于益生菌的策略的发展提供信息,以提高人体肠道中镁的生物可及性。
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引用次数: 0
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Current Microbiology
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