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Guidelines for genetic counselling supervision in Europe: a roadmap for ethical, effective, and reflective practice. 欧洲遗传咨询监督指南:道德、有效和反思实践的路线图。
IF 4.6 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-13 DOI: 10.1038/s41431-025-01946-2
Lídia Guimarães, Marina Serra Lemos, Margarida Rangel Henriques, Milena Paneque

This review article presents key guidelines for developing an effective and structured Genetic Counselling Supervision (GCS) framework for Europe. Based on international best practices and the authors' research at both the European and national levels, these 21 guidelines aim to provide a structured approach that will promote ethical standards, enhance professional well-being, and improve service quality, ensuring the successful implementation of GCS across healthcare settings in Europe. By doing so, this article seeks to address a critical gap identified by professionals and policymakers regarding the lack of clear guidance on what should drive genetic counselling supervision.

这篇综述文章提出了为欧洲制定有效和结构化的遗传咨询监督(GCS)框架的关键指南。基于国际最佳实践和作者在欧洲和国家层面的研究,这21条指导方针旨在提供一种结构化的方法,以促进道德标准,增强专业福祉,提高服务质量,确保在欧洲医疗保健环境中成功实施GCS。通过这样做,本文试图解决专业人士和政策制定者认为的一个关键差距,即缺乏关于什么应该推动遗传咨询监督的明确指导。
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引用次数: 0
Myeloid neoplasms risks for germline DDX41 pathogenic variants carriers. 种系DDX41致病变异携带者患髓系肿瘤的风险。
IF 4.6 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-03 DOI: 10.1038/s41431-025-01952-4
Marie-Charlotte Villy, Youenn Drouet, Lise Larcher, Yoann Vial, Benjamin Dauriat, Léa Veyrune, Laurène Fenwarth, Marie-Mathilde Auboiroux, Lucie Freiman, Sophie Nambot, Léa Patay, Marjolaine Willems, Emma Lachaier, Bénédicte Bonte, Delphine Lebon, Mathis Lepage, Olivier Ingster, Nathalie Gachard, Thomas Cluzeau, Michael Loschi, Jean Soulier, Pascale Flandrin-Gresta, Pascal Turlure, Nicolas Duployez, Emmanuelle Clappier, Dominique Stoppa-Lyonnet, Christine Lasset, Chrystelle Colas, Marie Sebert

Monoallelic germline DDX41 pathogenic variants (PV) are responsible for the most frequent monogenic predisposition to myeloid neoplasms (MN), i.e., to myelodysplastic syndrome and acute myeloid leukemia. MN are rare clonal diseases affecting hematopoietic tissues, and curative approaches frequently implicate hematopoietic stem cell transplantation, requesting testing for relatives of DDX41-mutated MN patients. Establishing the penetrance of germline DDX41 PV is crucial to determine how to monitor the unaffected relatives who carry the familial DDX41 PV. Our study aims to assess the risk of MN in relatives of affected DDX41 carriers using the Genotype-Restricted-Likelihood (GRL) approach. We identified 63 families with probands carrying a germline DDX41 PV (ACMG class 4 or class 5 variant) affected with MN, from 11 French centers. One hundred and sixty relatives, including 73 males (46%), were genotyped at the median age of 51 [range: 15-84] years, 80 of them (50%) being carriers of the familial DDX41 PV. The cumulative risk of MN at 70 years for DDX41 PV carriers was estimated at 19.5% [95% CI: 5.8%-62.5%], corresponding to a relative risk compared to the general population of 55 [95% CI: 16.4-176.5]. This risk appeared higher in males, although the difference did not reach statistical significance. Based on these findings, we suggest yearly complete blood count from the age of 50 for DDX41 PV carriers. Of note, we observed cases before the age of 50 in females, which could suggest sex-differentiated monitoring.

单等位种系DDX41致病变异(PV)是最常见的髓系肿瘤(MN)的单基因易感性,即骨髓增生异常综合征和急性髓系白血病。MN是影响造血组织的罕见克隆性疾病,治疗方法往往涉及造血干细胞移植,因此需要对ddx41突变MN患者的亲属进行检测。建立种系DDX41 PV的外显率对于确定如何监测携带家族DDX41 PV的未受影响的亲属至关重要。本研究旨在利用基因型限制似然(GRL)方法评估DDX41携带者亲属罹患MN的风险。我们从法国11个中心鉴定了63个先证携带MN影响的种系DDX41 PV (ACMG 4级或5级变体)的家庭。160例亲属,其中男性73例(46%),中位年龄51岁[范围:15-84],其中80例(50%)为家族性DDX41型PV携带者。DDX41 PV携带者70岁时MN的累积风险估计为19.5% [95% CI: 5.8%-62.5%],与一般人群相比的相对风险为55 [95% CI: 16.4-176.5]。这种风险在男性中似乎更高,尽管差异没有达到统计学意义。基于这些发现,我们建议DDX41 PV携带者从50岁开始每年进行一次全血计数。值得注意的是,我们观察到50岁之前的女性病例,这可能提示性别区分监测。
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引用次数: 0
Evaluating DNA methylation episignatures as a first-tier diagnostic test in individuals with suspected genetic disorders 评估DNA甲基化表观特征作为疑似遗传疾病个体的一级诊断测试。
IF 4.6 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-03 DOI: 10.1038/s41431-025-01939-1
Tinatin Tkemladze, Christopher Campbell, Kakha Bregvadze, Eka Kvaratskhelia, Elene Abzianidze, Leigh Demain, Sarah Jenkinson, Sarah Hilton, Michael Levy, Jennifer Kerkhof, David Gokhale, Bekim Sadikovic, Siddharth Banka
DNA methylation (DNAm) episignature analysis is an emerging tool for diagnosing individuals with neurodevelopmental disorders, congenital anomalies, and growth disorders. We evaluated its clinical utility as a first-tier test in 62 individuals without prior molecular testing. DNAm arrays identified a diagnosis in 30.6% (19/62) of cases. The positivity rate was highest for Fragile X syndrome (100%, 5/5), followed by syndromic disorders (44%, 8/18) and imprinting disorders (25%, 6/24), including Silver-Russell, Beckwith-Wiedemann, and Prader-Willi syndromes. No diagnoses were made in 15 individuals with non-syndromic neurodevelopmental disorders. Alternative diagnoses were identified in 4.8% (3/62) of cases. These findings suggest that DNAm arrays can serve as an effective first-tier diagnostic tool, particularly for syndromic and imprinting disorders, with potential to improve diagnostic efficiency and reduce reliance on sequential genetic testing. While these findings support the use of DNAm arrays as an effective first-tier tool in selected populations, larger, unselected cohort studies are needed to validate its generalizability.
DNA甲基化(DNAm)特征分析是一种新兴的诊断神经发育障碍、先天性异常和生长障碍的工具。我们评估了它作为一级测试在62个人没有事先分子检测的临床效用。在30.6%(19/62)的病例中,脱氧核糖核酸阵列确诊。脆性X综合征的阳性率最高(100%,5/5),其次是综合征性疾病(44%,8/18)和印迹性疾病(25%,6/24),包括银罗素综合征、贝克威斯曼综合征和普雷德-威利综合征。15名非综合征性神经发育障碍患者未被诊断。4.8%(3/62)的病例有其他诊断。这些发现表明,dna阵列可以作为一种有效的一线诊断工具,特别是对于综合征和印记疾病,具有提高诊断效率和减少对序列基因检测依赖的潜力。虽然这些发现支持DNAm阵列在选定人群中作为有效的一线工具,但需要更大规模的非选定队列研究来验证其普遍性。
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引用次数: 0
DNA methylation episignature for Smith-Magenis and Potocki-Lupski syndromes: a mirror perspective Smith-Magenis综合征和Potocki-Lupski综合征的DNA甲基化特征:镜像视角。
IF 4.6 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-30 DOI: 10.1038/s41431-025-01956-0
Liselot van der Laan, Karim Karimi, Kathleen Rooney, Mariëlle Alders, Alfredo Brusco, Amaia Lasa-Aranzasti, Nicola Brunetti-Pierri, Anna M. Cueto-Gonzalez, Barbara R. DuPont, Gerarda Cappuccio, Christele Dubourg, David Everman, Vincent Gatinois, Benjamin Ganne, David Genevieve, Giovanni Battista Ferrero, Marlies Kempers, Michael A. Levy, Marcello Niceta, Antonio Novelli, Valeria Orlando, Sylvie Odent, Wesley G. Patterson, Abeltje M. Polstra, Tony Roscioli, Nathalie Ruiz-Pallares, Quentin Sabbagh, Slavica Trajkova, Marco Tartaglia, Matthew A. Tedder, Annick Toutain, Udo Koehler, Irena Valenzuela, Johanna M. van Hagen, Anne-Marie van der Kevie-Kersemaekers, Peter Henneman, Marcel M. A. M. Mannens, Bekim Sadikovic, Mieke M. van Haelst
Smith-Magenis syndrome (SMS) and Potocki-Lupski syndrome (PTLS) are reciprocal genomic disorders caused by deletions and duplications of the 17p11.2 chromosomal region, respectively. This study aimed to identify and validate DNA methylation episignatures specific to SMS and PTLS, and to investigate their reciprocal relationship and shared molecular features with other neurodevelopmental disorders. Genome-wide DNA methylation was analyzed in individuals with an SMS (n = 26) or PTLS (n = 27) phenotype associated with copy number variation, and SMS patients with RAI1 sequence variants using the Infinium EPIC array. Differentially methylated CpG sites were identified and used to develop support vector machine (SVM)-based classifiers, which demonstrated high sensitivity and specificity for both syndromes. The analysis revealed a mirror-like episignature, with SMS showing predominant hypomethylation and PTLS displaying hypermethylation at shared loci. Functional correlation with other neurodevelopmental disorders highlighted significant overlap with known episignatures, including those associated with MEF2C-related disorders. Notably, individuals with RAI1 sequence variants did not exhibit the same DNA methylation patterns, suggesting that the epigenetic alterations are primarily driven by copy number changes. These findings establish SMS and PTLS as distinct yet interconnected epigenetic entities, offering valuable diagnostic biomarkers and insights into the molecular pathophysiology of 17p11.2-associated neurodevelopmental disorders.
Smith-Magenis综合征(SMS)和Potocki-Lupski综合征(PTLS)是分别由17p11.2染色体区域缺失和重复引起的互惠性基因组疾病。本研究旨在鉴定和验证SMS和PTLS特异性的DNA甲基化特征,并研究它们与其他神经发育障碍的相互关系和共同的分子特征。使用Infinium EPIC阵列分析了与拷贝数变异相关的SMS (n = 26)或PTLS (n = 27)表型个体以及具有RAI1序列变异的SMS患者的全基因组DNA甲基化。鉴定出差异甲基化的CpG位点并用于开发基于支持向量机(SVM)的分类器,该分类器对这两种综合征都具有高灵敏度和特异性。分析揭示了一个镜像样的特征,SMS显示主要的低甲基化,而PTLS在共享位点显示高甲基化。与其他神经发育障碍的功能相关性突出了与已知表观特征的显著重叠,包括与mef2c相关的疾病。值得注意的是,具有RAI1序列变异的个体没有表现出相同的DNA甲基化模式,这表明表观遗传改变主要是由拷贝数变化驱动的。这些发现确立了SMS和PTLS作为不同但相互关联的表观遗传实体,为17p11.2相关神经发育障碍的分子病理生理学提供了有价值的诊断生物标志物和见解。
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引用次数: 0
Clinical implementation of polygenic risk scores. 多基因风险评分的临床实施。
IF 4.6 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-29 DOI: 10.1038/s41431-025-01931-9
E Roberts, N Flaum, D G Evans
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引用次数: 0
Uncertainty, ethics, and progress in genomic medicine 基因组医学的不确定性、伦理和进展
IF 4.6 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-29 DOI: 10.1038/s41431-025-01955-1
Seda Sinem Zonuzi
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引用次数: 0
N-terminal truncating variants in CACNB1 cause a new congenital muscular disorder. CACNB1的n端截断变异导致一种新的先天性肌肉疾病。
IF 4.6 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-29 DOI: 10.1038/s41431-025-01944-4
Asier Iturrate, Nurit Assia Batzir, Ranit Jaron, David Garcia-Valentin, Julian Nevado, Jair Tenorio-Castano, Pablo Lapunzina, Kamila Lee, Rotem Greenberg, Dvora Sassi, Sharon Aharoni, Alla Kuzminsky, Lina Basel-Salmon, Naama Orenstein, Yakov Fellig, Shay Ben-Shachar, Dina Marek-Yagel, Victor L Ruiz-Perez

Excitation-contraction (EC) coupling is an essential process for skeletal muscle function. Pathogenic variants in different EC coupling components have previously been associated with various neuromuscular disorders. In this study we aimed to identify the genetic etiology of a muscular condition characterized by early-onset muscle weakness, elevated CK, ptosis and low body weight, which was observed in three individuals from two unrelated consanguineous families. Exome sequencing (ES) performed in multiple individuals of one family, and ES in combination with SNP array-based homozygosity mapping in the proband of the other family, revealed different homozygous loss-of-function variants in the second exon of CACNB1 in the affected individuals from each family. CACNB1 encodes the β1 subunit of the skeletal muscle dihydropyridine receptor (DHPR), a voltage-gated Ca2+ channel with a major role in EC coupling. Molecular impact of the identified variants was assessed in LHCN-M2 human myoblasts. Long-read RNA sequencing in LHCN-M2 wild-type myotubes showed that in differentiated skeletal muscle cells virtually all CACNB1 transcript isoforms contain exon 2 and will therefore be affected by genetic variants in this exon. Pathogenicity of the identified CACNB1 variants was further validated by replicating one of them (c.85-1G>A) in LHCN-M2 cells using CRISPR-Cas9-mediated base-editing. Analysis of LHCN-M2 edited myotubes demonstrated that in addition to the loss of β1 subunits, these cells displayed severely reduced protein levels of α1S, the pore-forming subunit of DHPR. We conclude that pathogenic variants in CACNB1 cause a new congenital muscular disorder.

兴奋-收缩耦合是骨骼肌功能的重要过程。不同EC偶联成分的致病变异先前与各种神经肌肉疾病有关。在这项研究中,我们的目的是确定遗传病因的肌肉状况的特点是早发性肌肉无力,CK升高,上睑下垂和低体重,观察到三个个体从两个不相关的近亲家庭。在一个家庭的多个个体中进行的外显子组测序(ES),以及在另一个家庭的先显子中基于SNP阵列的纯合子定位,揭示了每个家庭中受影响个体的CACNB1第二外显子的不同纯合子功能缺失变异。CACNB1编码骨骼肌二氢吡啶受体(DHPR)的β1亚基,DHPR是一个电压门控的Ca2+通道,在EC偶联中起主要作用。鉴定的变异在LHCN-M2人成肌细胞中的分子影响进行了评估。LHCN-M2野生型肌管的长读RNA测序显示,在分化的骨骼肌细胞中,几乎所有的CACNB1转录异构体都含有外显子2,因此会受到该外显子遗传变异的影响。通过crispr - cas9介导的碱基编辑,在LHCN-M2细胞中复制其中一个(c.85-1G>A),进一步验证了所鉴定的CACNB1变异的致病性。对LHCN-M2编辑的肌管的分析表明,除了β1亚基的缺失外,这些细胞的α1S蛋白水平严重降低,α1S是DHPR的成孔亚基。我们得出结论,CACNB1的致病变异引起一种新的先天性肌肉疾病。
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引用次数: 0
The importance of accurate phenotyping in large-scale analyses of common disorders such as hearing loss 准确的表型在听力损失等常见疾病的大规模分析中的重要性。
IF 4.6 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-27 DOI: 10.1038/s41431-025-01957-z
Morag A. Lewis, Bradley A. Schulte, Judy R. Dubno, Karen P. Steel
Age-related hearing loss (ARHL) is a common, complex disease with high heritability, but its underlying genetic landscape remains unclear. Studying such a condition requires large cohorts, detailed genotyping, and deep phenotyping. However, while large cohorts with next-generation sequence data are becoming increasingly common, the challenge of administering audiometric tests at scale has meant that in-depth auditory phenotyping is rarely included. Here we present our analyses of three cohorts with different forms of phenotype data, which reveal the differences made by even small changes in phenotyping. Detailed audiometry enables interrogation of genetic data by auditory phenotypes, but if these data are not available, self-reports of hearing difficulty may also serve. However, relying on medical records alone is ineffective for classifying biobank participants for a common condition like ARHL, and is likely to result in many people being wrongly classified in the control group.
年龄相关性听力损失(ARHL)是一种常见的复杂疾病,具有高遗传性,但其潜在的遗传景观尚不清楚。研究这种情况需要大量的队列、详细的基因分型和深入的表型分型。然而,虽然具有下一代序列数据的大型队列越来越普遍,但大规模进行听力测试的挑战意味着很少包括深度听觉表型。在这里,我们提出了我们的分析与不同形式的表型数据的三个队列,这揭示了差异,甚至在表型上的微小变化。详细的听力测量可以通过听觉表型来询问基因数据,但如果这些数据不可用,听力困难的自我报告也可以起作用。然而,仅依靠医疗记录对ARHL等常见疾病的生物库参与者进行分类是无效的,并且可能导致许多人被错误地分类为对照组。
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引用次数: 0
From screening to strategy: Clinical implications of COL4A3/COL4A4 variants found in reproductive genetic testing 从筛选到策略:在生殖基因检测中发现COL4A3/COL4A4变异的临床意义
IF 4.6 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-27 DOI: 10.1038/s41431-025-01953-3
Gráinne Butler, David J. Amor, Catherine Quinlan
Reproductive genetic carrier screening (RGCS) is expanding in both public and private healthcare. The primary aim is to identify carrier status for genetic disorders, inform reproductive decision making and promote reproductive autonomy. As screening panels have increased, the potential for findings with personal health implications rises. We report the prevalence of COL4A3/COL4A4 heterozygous variants within a population undergoing RGCS in a private setting and propose a comprehensive management plan for the ongoing care of this patient cohort. Acknowledging that comprehensive guidelines exist for genetic testing and management of Alport syndrome as a broad patient group, this communication seeks to highlight the increasingly common finding of autosomal dominant Alport syndrome and proposes accessible and practical strategies for the clinicians encountering these patients.
生殖遗传载体筛查(RGCS)在公共和私人医疗保健中都在扩大。主要目的是识别遗传疾病的携带者状态,为生殖决策提供信息,促进生殖自主。随着筛查小组的增加,对个人健康影响的潜在发现也在增加。我们报告了COL4A3/COL4A4杂合变异体在私人环境中接受RGCS的人群中的患病率,并为该患者队列的持续护理提出了综合管理计划。鉴于Alport综合征作为一个广泛的患者群体存在着全面的基因检测和管理指南,本文旨在强调常染色体显性Alport综合征日益普遍的发现,并为遇到这些患者的临床医生提出可获得和实用的策略。
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引用次数: 0
PKD1 5’UTR variants are a rare cause of disease in ADPKD and suggest a new focus for therapeutic development PKD1 5'UTR变异体是ADPKD中一种罕见的病因,提示了治疗发展的新焦点。
IF 4.6 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-26 DOI: 10.1038/s41431-025-01949-z
Laura Wedd, Yvonne Hort, Chirag Patel, John A. Sayer, Rocio Rius, Andrew J. Mallett, Denny L. Cottle, Ian M. Smyth, Timothy Furlong, John Shine, Amali Mallawaarachchi
Autosomal Dominant Polycystic Kidney Disease (ADPKD), caused by pathogenic variants in PKD1 and PKD2, is the most common monogenic cause of kidney failure. Approximately 10% of ADPKD patients remain undiagnosed after coding-region focused genomic testing. Non-coding variants in regulatory regions are not an established cause of disease in ADPKD. We performed regulatory region analysis in a primary cohort of undiagnosed ADPKD patients (n = 20) and then extended this analysis to patients with undiagnosed cystic kidney disease within the Australian KidGen cohort (n = 42) and the Genomics England rare disease cohort (n = 1320). Through this genomic analysis we identified two rare, potentially disease-causing variants in the PKD1 5′untranslated region (UTR). We then designed a PKD1 5′UTR-luciferase translation assay to characterise these variants in vitro, which showed that a PKD1 variant c.−69dupG, reduced the translation efficiency of the main PKD1 open reading frame by ~87% compared to wildtype (p < 0.0001). The human PKD1 5′UTR contains two upstream open reading frames (uORFs). Using our model, we knocked-out the upstream open reading frames of the wildtype PKD1 5′UTR sequence, which increased expression of wildtype polycystin-1 (130%, p < 0.0001). We show that PKD1 5′-UTR variants are a currently overlooked rare cause of disease in ADPKD and that analysis of this region should be included in variant analysis pathways to increase diagnostic rates. In addition, we show that manipulation of the wildtype 5′UTR sequence can increase polycystin-1 expression, providing insights into regulation of PKD1 and suggested new approaches for therapeutic intervention in this haplo-insufficient disease.
常染色体显性多囊肾病(ADPKD)由PKD1和PKD2的致病变异引起,是肾衰竭最常见的单基因原因。大约10%的ADPKD患者在编码区集中的基因组检测后仍未被诊断出来。调控区域的非编码变异不是ADPKD的确定病因。我们在未确诊的ADPKD患者的主要队列(n = 20)中进行了调控区分析,然后将该分析扩展到澳大利亚KidGen队列(n = 42)和Genomics England罕见疾病队列(n = 1320)中未确诊的囊性肾病患者。通过基因组分析,我们在PKD1 5'非翻译区(UTR)发现了两种罕见的潜在致病变异。然后,我们设计了PKD1 5' utr -荧光素酶翻译实验来表征这些体外变异,结果表明PKD1变异c - 69dupg与野生型相比,使PKD1主开放阅读框的翻译效率降低了约87% (p
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引用次数: 0
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European Journal of Human Genetics
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