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A new species of the Trichia botrytis complex from the cloud forest in Ecuador 厄瓜多尔云雾林中的一种新的 Trichia botrytis 复合菌种。
IF 1.9 2区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1016/j.ejop.2024.126123
Dmytro Leontyev , Edvin Johannesen , Gabriel Moreno , Iryna Yatsiuk , Martin Schnittler
The paper describes a new myxomycete species, Trichia tuberculata, from the Ecuadorian cloud forest. The phylogeny constructed with nuclear 18S rDNA and mitochondrial 17S rDNA sequences indicates that the taxon is closely related to recently described species T. acetocorticola, T. nubila, and T. pinicola, all within the T. botrytis complex. The morphology of the inner peridium surface and capillitium also aligns T. tuberculata with these species. However, the distinctive tuberculate peridium, short elater tips, and perhaps the distribution range (so far found in the equatorial zone only) distinguish T. tuberculata from related taxa.
本文描述了厄瓜多尔云雾林中的一个新菌类--Trichia tuberculata。用核 18S rDNA 和线粒体 17S rDNA 序列构建的系统发生表明,该分类群与最近描述的物种 T. acetocorticola、T. nubila 和 T. pinicola 关系密切,它们都属于 T. botrytis 复合体。T. tuberculata 与这些物种的包被内表面和毛细管的形态也一致。然而,独特的瘤状包被、短的叶尖以及分布范围(迄今为止仅在赤道地区发现)可能会将 T. tuberculata 与相关类群区分开来。
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引用次数: 0
Architecture of the flagellar apparatus and related structures in Kolkwitziella acuta: Towards a fine-structural characterization of pallium-feeding dinoflagellates (Protoperidiniaceae) Kolkwitziella acuta 的鞭毛器及相关结构:对食藻类甲藻(原甲藻纲)进行精细结构鉴定。
IF 1.9 2区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1016/j.ejop.2024.126120
Sandra C. Craveiro , Mariana S. Pandeirada , Øjvind Moestrup , António J. Calado
The fine-structural organization of the protoperidiniacean Kolkwitziella acuta was examined by SEM and TEM. Serial sections of five cells of K. acuta were used to study the architecture of basal bodies and associated roots, the pusular system, and the feeding apparatus. The basal bodies were inserted 1 µm apart at an angle of ca. 80°, and displayed the typical peridinioid features of associating with two roots each and having a layered connective linking the longitudinal microtubular root to the transverse striated root. The transverse flagellar canal was associated with a ‘sac pusule’, while the longitudinal flagellar canal was linked, via a pusule canal surrounded by a conspicuous layer of striated material, to a collecting chamber from which ca. 40 pusular tubes radiated. An extruded pallium was present, associated with a microtubular strand (the MSP) that extended anteriorly and progressively separated into six or seven groups of microtubules, with electron-opaque vesicles present along the MSP. A prominent striated collar surrounded the exit area of the pallium and was connected to the striated collars of both the transverse and longitudinal flagellar canals. The partial nuclear-encoded LSU rDNA sequence confirmed the identification as K. acuta. The currently known fine-structural features of pallium-feeding Protoperidiniaceae are summarized.
利用扫描电子显微镜(SEM)和电子显微镜(TEM)研究了原尾柱虫Kolkwitziella acuta的精细结构组织。用五片 K. acuta 细胞的连续切片来研究基部体和相关根系、脓泡系统和摄食装置的结构。基质体以约 80° 的角度相距 1 µm 插入,并显示出典型的周细胞特征,即每个基质体与两个根相连,并有分层的结缔组织将纵向微管根与横向条纹根连接起来。横向鞭毛管与一个 "囊脓管 "相连,而纵向鞭毛管则通过脓管与一个收集室相连,收集室周围有一层明显的条状物质,从收集室中伸出约 40 根脓管。有一个挤压出的褶层,与向前方延伸的微管股(MSP)相连,并逐渐分离成 6 或 7 组微管,沿 MSP 有不透电子的囊泡。一个突出的条纹领环绕着褶皱出口区域,并与横向和纵向鞭毛管的条纹领相连。部分核编码的 LSU rDNA 序列证实了其为 K. acuta。本文总结了目前已知的以鳞片为食的原栉水母科(Protoperidiniaceae)的精细结构特征。
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引用次数: 0
Ecology of free-living freshwater heterotrophic euglenoids: A summarizing review 自由生活淡水异养拟绿藻生态学综述。
IF 1.9 2区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1016/j.ejop.2024.126127
Jaroslav Kubín , Josef Juráň
This review aims to compile sparse information on the ecology of freshwater heterotrophic euglenoids and synthesize the main phenomena and hypotheses from published results. Apparently, heterotrophic euglenoids play a very important role in the nutrient flow of water ecosystems and are irreplaceable heterotrophic contributors in benthic communities, as their total biomass is by far the largest among heterotrophic flagellates. Even though they are obviously a very crucial part of the diversity of freshwater heterotrophic protists, and likely the most represented (in terms of biovolume) group of heterotrophic flagellates, there have been only a few attempts to elucidate their ecological preferences, roles, niches, and importance. They exhibit three nutrition modes—bacterivory, eukaryovory, and osmotrophy—which are strategies closely related to their taxonomical groupings and phylogenetic positions. Unfortunately, the phylogeny of the majority of the species remains unknown, similar to their autecology. There are major problems with the quantitative research methodologies, which is a big challenge for future research to improve.
本文对淡水异养拟绿藻的生态学研究进行了综述,并对已发表的研究成果中的主要现象和假设进行了综合。显然,异养拟绿藻在水生态系统的养分流动中起着非常重要的作用,是底栖生物群落中不可替代的异养贡献者,其总生物量是迄今为止异养鞭毛虫中最大的。尽管它们显然是淡水异养原生生物多样性中非常重要的一部分,并且可能是异养鞭毛虫中最具代表性(就生物体积而言)的一类,但只有少数人试图阐明它们的生态偏好、作用、生态位和重要性。它们表现出三种营养模式——细菌营养、真核营养和渗透营养——这与它们的分类类群和系统发育位置密切相关。不幸的是,大多数物种的系统发育仍然未知,类似于它们的起源。定量研究方法存在较大问题,是今后研究的一大挑战。
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引用次数: 0
Morphology and molecular phylogeny of Pelagothrix abietum (Penard, 1922) comb. nov. and two new Metacystis and Apolagynus species (Ciliophora, Prostomatea) Morphology and molecular phylogeny of Pelagothrix abietum (Penard, 1922) comb.
IF 1.9 2区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1016/j.ejop.2024.126122
Limin Jiang , Qianhui Sun , Xiaoxuan Zhu , Hunter N. Hines , Xiaozhong Hu
Ciliates of the class Prostomatea show a broad spectrum of feeding strategies and often occur abundantly in various aquatic habitats, playing a vital role in the biogeochemical cycle. Due to their small cell size and simple structure, prostomateans were considered to be a group with a lower degree of morphological differentiation for a long time. However, recent research suggests that the diversity of this group of ciliates is higher than previously thought. In the present study, three prostomateans, collected from different localities in China and classified into three families, were examined using morphological and phylogenetic techniques. Our analyses revealed two new species, Metacystis multitricha sp. nov. and Apolagynus spiralis sp. nov., and suggested a transfer of Prorodon abietum Penard, 1922 to the genus Pelagothrix. Phylogenetic analyses corroborated the morphological classifications of the three species into the families Metacystidae, Lagynusidae, and Holophryidae, respectively, demonstrating that their diagnostic characteristics bear an evolutionary signal at the family level.
前列纤毛虫类纤毛虫的摄食策略多种多样,经常大量出现在各种水生生境中,在生物地球化学循环中扮演着重要角色。由于细胞体积小、结构简单,前列纤毛虫长期以来被认为是形态分化程度较低的一类。然而,最近的研究表明,这类纤毛虫的多样性比以前想象的要高。本研究利用形态学和系统发生学技术,对从中国不同地区采集到的三种前列纤毛虫进行了研究,并将其分为三科。我们的分析揭示了两个新物种:Metacystis multitricha sp.nov.和 Apolagynus spiralis sp.nov.,并建议将 Prorodon abietum Penard, 1922 移入 Pelagothrix 属。系统发生学分析证实了这三个物种分别归入 Metacystidae 科、Lagynusidae 科和 Holophryidae 科的形态学分类,表明它们的诊断特征具有科一级的进化信号。
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引用次数: 0
Resource supply and intraspecific variation in inducible defense determine predator–prey interactions in an intraguild predation food web 资源供应和诱导性防御的种内变异决定了捕食者与被捕食者之间的相互作用。
IF 1.9 2区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-08-01 DOI: 10.1016/j.ejop.2024.126114
Fenja-Marie Möller , Sabine Flöder , Graziano Di Giuseppe , Stefanie Devi Moorthi

This study investigated the dynamics of reciprocal phenotypic plasticity entailing inducible defense and offense in freshwater ciliate communities in response to altered resource supply and the extent of intraspecific trait variation. Communities consisted of Euplotes octocarinatus (intraguild prey) capable of inducible defense to escape predation, Stylonychia mytilus (intraguild predator) capable of inducible offense to expand its prey spectrum, and Cryptomonas sp. (algal resource). The extent of inducible defense was tested in ten different Euplotes strains in response to freeze-killed Stylonychia concentrate, revealing significant differences in their width and length development. In a subsequent 30-day experiment, four strains were incubated in monoculture and mixture with Stylonychia under continuous and pulsed microalgae supply. The polyclonal Euplotes population outperformed the monoclonal populations, except one, which developed the most pronounced inducible defense and retained the highest biovolume. Stylonychia fluctuated in size, but dominated all communities irrespective of clonal composition. Pulsed resource supply promoted biovolume production of both species. However, periods of resource depletion resulted in more Stylonychia resting cysts, allowing Euplotes to resume growth. Our study provides new insights into interactions of induced defense and intraguild predation under variable environmental conditions, emphasizing the relevance of intraspecific trait variation for predator–prey interactions and community dynamics.

本研究调查了淡水纤毛虫群落中可诱导防御和进攻的互惠表型可塑性动态,以应对资源供应的改变和种内性状变异的程度。群落由能够诱导防御以逃避捕食的八角栉水母(Euplotes octocarinatus)(群落内猎物)、能够诱导进攻以扩大猎物范围的贻贝(群落内捕食者)和隐单胞菌(藻类资源)组成。我们测试了十种不同幼虫品系对冷冻杀死的石龙子精矿的诱导性防御程度,结果发现它们在宽度和长度发育方面存在显著差异。在随后进行的为期 30 天的实验中,在连续和脉冲微藻供应条件下,对四种菌株进行了单一培养和与石龙子菌混合培养。多克隆 Euplotes 群体的表现优于单克隆群体,只有一种除外,这种群体的诱导性防御能力最强,生物体积也最大。花柱虫的大小有所波动,但在所有群落中都占主导地位,与克隆组成无关。脉冲式的资源供应促进了这两个物种的生物量生产。然而,资源枯竭期会导致更多的石龙子休眠囊,从而使大戟科鱼类恢复生长。我们的研究为在多变的环境条件下诱导防御和群落内捕食的相互作用提供了新的见解,强调了种内性状变异与捕食者-被捕食者相互作用和群落动态的相关性。
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引用次数: 0
Comparison of mixotrophic and heterotrophic chrysomonads of similar size regarding bacterivory and growth rate 大小相似的混养和异养金丝单胞菌在细菌吞噬和生长速度方面的比较
IF 1.9 2区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-08-01 DOI: 10.1016/j.ejop.2024.126109
Tobias Pietsch, Hartmut Arndt

Small chrysomonads are important bacterivores in aquatic ecosystems with a high molecular diversity compared to low morphological differences observed by light microscopy. The high diversity of these morphologically almost indistinguishable species leads to the question to which extent their functional role in ecosystems differs and how their ecological traits can be defined. The present study investigates the prey size and population growth rate of different chrysomonad species. Eleven phylogenetically well-defined strains representing seven strains of heterotrophic and four strains of mixotrophic chrysomonads were compared. All investigated strains belonged to the same functional group of bacterivorous flagellates, feeding on the same bacteria size range, while population growth rates of chrysomonads depended on nutritional strategy and species-specific differences. We observed a high individual variability of growth rates within a population. Our results point to the necessity to consider not only differences in ecological traits among species but also among specimens within a population.

小型金单胞菌是水生生态系统中的重要食菌体,其分子多样性很高,而光镜观察到的形态差异却很低。这些在形态上几乎无法区分的物种具有高度多样性,这就引出了一个问题:它们在生态系统中的功能作用在多大程度上有所不同,以及如何定义它们的生态特征。本研究调查了不同金单胞菌物种的猎物大小和种群增长率。本研究比较了 11 个系统发育明确的菌株,分别代表 7 个异养型和 4 个混养型金单胞菌。所有被研究的菌株都属于同一食菌鞭毛虫功能群,以相同大小范围的细菌为食,而金单胞菌的种群生长率取决于营养策略和物种特异性差异。我们观察到种群内生长率的个体差异很大。我们的研究结果表明,不仅有必要考虑物种之间生态特征的差异,而且有必要考虑种群内标本之间的差异。
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引用次数: 0
Morphology and molecular phylogeny of Euplotes baugilensis n. sp. (Ciliophora, Spirotrichea), with an illustrated key to Euplotes species with reduced cirri Euplotes baugilensis n. sp. (Ciliophora, Spirotrichea) 的形态学和分子系统发育,附带绘有图解的具有退化卷须的 Euplotes 种的检索表
IF 1.9 2区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-08-01 DOI: 10.1016/j.ejop.2024.126110
Eun-Hye Do , Hye-In Kwon , Jeong Hyeon Yeo , Pablo Quintela-Alonso , Jae-Ho Jung

Euplotes baugilensis n. sp. was discovered in a temporary puddle that formed after rainfall on a mountain footpath near Gangneung-Wonju National University in Gangneung, South Korea. After isolation, a pure culture was established, and the new species was examined using live observation, silver-impregnation (protargol and ‘wet’ silver nitrate), scanning electron microscopy, and the analysis of the 18S rRNA gene sequence. Morphologically, E. baugilensis n. sp. is characterized by small body size (on average 49 × 31 µm in vivo), 9 ordinary fronto-ventral cirri (cirrotype-9) with one reduced cirrus V/2 (composed of four non-ciliated basal bodies), 5 transverse cirri, 7 or 8 dorsolateral kineties, 6 dorsal prominent ridges, and a dargyrome (silverline system) of double type. In this study, we have used a combination of morphological and molecular techniques to characterize E. baugilensis n. sp. and determine its phylogenetic position within the genus Euplotes. Molecular analysis using 18S rRNA gene sequences indicated that E. baugilensis n. sp. is most closely related to E. curdsi (with a sequence identity of 96.8 %).

Euplotes baugilensis n. sp.是在韩国江陵的江陵-原州国立大学附近山间小径上的一个雨后形成的临时水坑中发现的。分离后,建立了纯培养物,并采用活体观察、银浸渍(原银醇和 "湿 "硝酸银)、扫描电子显微镜和 18S rRNA 基因序列分析等方法对该新物种进行了研究。从形态上看,E. baugilensis n. sp.的特征是体型较小(活体平均 49 × 31 µm),9 个普通的前腹部卷须(卷须型-9),其中有一个退化的卷须 V/2(由 4 个无纤毛的基部体组成),5 个横向卷须,7 或 8 个背侧节,6 个背侧突出脊,以及双型的黑斑(银线系统)。在本研究中,我们综合使用了形态学和分子技术来描述 E. baugilensis n. sp.的特征,并确定其在 Euplotes 属中的系统发育位置。利用 18S rRNA 基因序列进行的分子分析表明,E. baugilensis n. sp.与 E. curdsi 的亲缘关系最为密切(序列一致性为 96.8%)。
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引用次数: 0
Molecular characterization of a catalase gene in the freshwater green alga Closterium ehrenbergii and its putative function against abiotic stresses 淡水绿藻 Closterium ehrenbergii 中过氧化氢酶基因的分子特征及其对非生物胁迫的推定功能
IF 1.9 2区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-08-01 DOI: 10.1016/j.ejop.2024.126111
Hui Wang , Peiling Wu , Fengru Li , Jeongmin Shin , Jang-Seu Ki

Catalases (CATs) are ubiquitous antioxidant enzymes that prevent cellular oxidative damage through the decomposition of H2O2. However, there is relatively little information on CAT in the worldwide-distributed freshwater green alga Closterium ehrenbergii. Here, we cloned the full-length catalase cDNA from C. ehrenbergii (CeCAT) and characterized its structural features and expressional responses against aquatic contaminants. The open reading frame of CeCAT was determined to be 1476 bp, encoding 491 amino acids with a theoretical molecular mass of 56.1 kDa. The CeCAT protein belongs to the NADPH-binding CAT family and might be located in the cytosol. BLAST and phylogenetic results showed that CeCAT had a high identity with CAT proteins from other microalgae and the water lily Nymphaea colorata (Streptophyta). The transcriptional levels of CeCAT were significantly upregulated by the metal copper and herbicide atrazine, but little affected by other tested metals (Ni and Cr) and endocrine-disrupting chemicals (polychlorinated biphenyl, PCB). The maximum expression was registered under 0.1 mg/L CuCl2 and 0.2 mg/L CuSO4 exposures. In addition, excess copper considerably increased production of reactive oxygen species in the cells. These results suggest that CeCAT may function to defend against oxidative stress in green algae and can respond specifically to different kinds of metals and herbicides.

过氧化氢酶(CAT)是一种无处不在的抗氧化酶,通过分解 H2O2 防止细胞氧化损伤。然而,关于分布于世界各地的淡水绿藻梭菌(Closterium ehrenbergii)中过氧化氢酶的信息相对较少。在此,我们克隆了 C. ehrenbergii(CeCAT)的全长过氧化氢酶 cDNA,并描述了其结构特征和对水生污染物的表达反应。经测定,CeCAT 的开放阅读框为 1476 bp,编码 491 个氨基酸,理论分子量为 56.1 kDa。CeCAT 蛋白属于 NADPH 结合型 CAT 家族,可能位于细胞质中。BLAST 和系统发育结果表明,CeCAT 与其他微藻和睡莲 Nymphaea colorata(Streptophyta)的 CAT 蛋白具有很高的同一性。金属铜和除草剂阿特拉津会显著上调 CeCAT 的转录水平,但其他受测金属(镍和铬)和干扰内分泌的化学物质(多氯联苯)对其影响不大。在接触 0.1 毫克/升 CuCl2 和 0.2 毫克/升 CuSO4 的情况下,表达量最大。此外,过量的铜大大增加了细胞中活性氧的产生。这些结果表明,CeCAT 可能具有抵御绿藻氧化应激的功能,并能对不同种类的金属和除草剂做出特殊反应。
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引用次数: 0
Ciliate diversity and growth rates in experimental recirculating aquaculture and aquaponics systems using microscopy 利用显微镜观察试验性循环水产养殖和鱼菜共生系统中纤毛虫的多样性和生长率
IF 1.9 2区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-08-01 DOI: 10.1016/j.ejop.2024.126113
Stefanos Moschos , Konstantinos Ar. Kormas , Hera Karayanni

The function of recirculating aquaculture systems (RAS) relies on microbial communities, which convert toxic, fish-excreted ammonia into substances that can provide nutrients to plants as in the case of aquaponics systems. In the present study, heterotrophic protist communities of experimental sea water RAS and freshwater aquaponics systems were investigated using microscopy to characterize their diversity, natural abundance, and potential growth rates. Heterotrophic protist abundance was low (732 ± 21 to 5451 ± 118 ciliates L−1 and 58 ± 8 to 147 ± 18 nanoflagellates mL−1 in the aquaponics system and 78 ± 28 to 203 ± 48 ciliates L−1 in the RAS), which is in line with values typically reported for rivers. In the aquaponics system, ciliates grew faster in the fish rearing tanks (1.9 ± 0.01 to 1.21 ± 0.03 d−1 compared to 0.54 ± 0.03 to 0.79 ± 0.05 d−1 in the other compartments), while heterotrophic nanoflagellates grew slower in drain tanks downstream of the hydroponics compartment (0.5 ± 0.3 to 1.37 ± 0.05 d−1 and 4.09 ± 0.11 d−1 to 6.03 ± 0.34 d−1in the other compartments). Results indicated distinct niches and reduced microeukaryotic diversity at the end of the system’s operation cycle.

再循环水产养殖系统(RAS)的功能依赖于微生物群落,微生物群落可将鱼类分泌的有毒氨转化为可为植物提供养分的物质,例如鱼菜共生系统。本研究使用显微镜调查了海水 RAS 和淡水鱼菜共生系统实验中的异养原生生物群落,以确定其多样性、自然丰度和潜在生长率。异养原生生物丰度较低(鱼菜共生系统中为 732 ± 21 至 5451 ± 118 纤毛虫 L-1 和 58 ± 8 至 147 ± 18 纳鞭毛虫 mL-1,RAS 中为 78 ± 28 至 203 ± 48 纤毛虫 L-1),这与通常报告的河流数值一致。在鱼菜共生系统中,鱼类饲养箱中的纤毛虫生长较快(1.9 ± 0.01 至 1.21 ± 0.03 d-1,而其他区域为 0.54 ± 0.03 至 0.79 ± 0.05 d-1)。05 d-1),而在水培室下游的排水槽中,异养纳米鞭毛虫的生长速度较慢(0.5 ± 0.3 至 1.37 ± 0.05 d-1 和 4.09 ± 0.11 d-1 至 6.03 ± 0.34 d-1)。结果表明,在系统运行周期结束时,龛位不同,微真核细胞多样性减少。
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引用次数: 0
Quantitative analysis of trichocysts in Paramecium bursaria following artificial removal and infection with the symbiotic Chlorella variabilis 人工去除和感染共生变色小球藻后囊丝藻毛囊的定量分析
IF 1.9 2区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-08-01 DOI: 10.1016/j.ejop.2024.126115
Hikaru Morita , Yuuki Kodama

The ciliate Paramecium bursaria possesses cell organelles called trichocysts that have defensive functions. Paramecium bursaria is capable of symbiosis with Chlorella variabilis, and the symbiotic algae are situated in close proximity to the trichocysts. To clarify the relationship between trichocysts in P. bursaria and the presence or absence of the intracellular symbiotic C. variabilis, this study compared the regeneration capacity of trichocysts in alga-free and algae-bearing P. bursaria. In addition, trichocyst protein abundance was measured when alga-free P. bursaria specimens were artificially infected with Chlorella. After completely removing trichocysts from P. bursaria cells by treatment with lysozyme and observing them after 24 h, the percentage of regenerating trichocysts in the entire cell was significantly higher in alga-free cells than that in algae-bearing cells. We also developed a simple method for the isolation of high-purity trichocysts to quantify trichocyst protein amounts. There was a significant difference in the trichocyst protein abundance of P. bursaria before and one week after mixing with Chlorella (i.e., after the establishment of symbiosis with algae). This study shows the importance of trichocysts in alga-free P. bursaria as well as their competition with symbiotic C. variabilis for attachment sites during the algal infection process.

纤毛虫法氏囊伞菌拥有一种叫做 "毛囊 "的细胞器,具有防御功能。法氏囊伞藻能与变色小球藻(Chlorella variabilis)共生,而共生藻与毛囊囊非常接近。为了弄清法氏囊虫毛囊与细胞内共生变色小球藻存在与否之间的关系,本研究比较了无藻和有藻法氏囊虫毛囊的再生能力。此外,还测量了无藻法氏囊标本人工感染小球藻后毛囊蛋白质的丰度。用溶菌酶处理法完全去除法氏囊虫细胞中的毛囊后,24 小时后对其进行观察,发现无藻细胞中再生毛囊占整个细胞的百分比明显高于有藻细胞。我们还开发了一种分离高纯度毛囊的简单方法,以量化毛囊蛋白质的含量。在与小球藻混合前和混合一周后(即与藻类建立共生关系后),毛囊虫的毛囊蛋白丰度存在明显差异。这项研究表明了毛囊虫在无藻状态下的重要性,以及在藻类感染过程中它们与共生变异球藻竞争附着点的重要性。
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引用次数: 0
期刊
European journal of protistology
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