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Leveraging selection for function in tumor evolution: System-level cancer therapies. 利用肿瘤进化中的功能选择:系统水平的癌症治疗。
IF 2.1 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2025-08-18 eCollection Date: 2025-01-01 DOI: 10.1093/emph/eoaf022
Frédéric Thomas, Jean-Pascal Capp, Antoine M Dujon, Andriy Marusyk, Klara Asselin, Mario Campone, Pascal Pujol, Catherine Alix-Panabières, Benjamin Roche, Beata Ujvari, Robert Gatenby, Aurora M Nedelcu

Current cancer therapies often fail due to tumor heterogeneity and rapid resistance evolution. A new evolutionary framework, 'selection for function,' proposes that tumor progression is driven by group phenotypic composition (GPC) and its interaction with the microenvironment, not by individual cell traits. This perspective opens new therapeutic avenues: targeting the tumor's functional networks rather than individual cells. Real-time tracking of GPC changes could inform adaptive treatments, delaying progression and resistance. By integrating evolutionary and ecological principles with conventional therapies, this strategy aims to transform cancer from a fatal to a manageable chronic disease. Crucially, it does not necessarily require new drugs but offers a way to repurpose existing therapies to impair a tumor's evolutionary potential. By steering tumor evolution toward less aggressive states, this approach could improve prognosis and long-term patient survival compared to current methods. We argue that leveraging GPC dynamics represents a critical, yet underexplored, opportunity in oncology.

由于肿瘤的异质性和快速的耐药性演变,目前的癌症治疗经常失败。一个新的进化框架“功能选择”提出,肿瘤的进展是由群体表型组成(GPC)及其与微环境的相互作用驱动的,而不是由单个细胞特征驱动的。这一观点开辟了新的治疗途径:针对肿瘤的功能网络而不是单个细胞。实时跟踪GPC变化可以为适应性治疗提供信息,延缓进展和耐药性。通过将进化和生态原理与传统疗法相结合,该策略旨在将癌症从致命疾病转变为可控制的慢性疾病。至关重要的是,它并不一定需要新的药物,而是提供了一种重新利用现有疗法来削弱肿瘤进化潜力的方法。通过引导肿瘤向侵袭性较低的状态发展,与目前的方法相比,这种方法可以改善预后和长期患者生存。我们认为,利用GPC动态代表了肿瘤学中一个关键的,但尚未充分开发的机会。
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引用次数: 0
Dual targeting of conserved cell cycle and transcription programs in advanced colorectal cancer by fadraciclib. fadraciclib在晚期结直肠癌中保守细胞周期和转录程序的双重靶向。
IF 2.1 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2025-08-08 eCollection Date: 2025-01-01 DOI: 10.1093/emph/eoaf021
Mohammad Zokaasadi, Wylie K Watlington, Divya L Dayanidhi, John B Mantyh, Gabrielle Rupprecht, Shannon McCall, David G Blake, Jason A Somarelli, David S Hsu

Background and objectives: Control of cell division is tightly regulated in eukaryotic cells, and dysfunction in cell cycle checkpoints is a key hallmark of malignant transformation that promotes a fitness advantage over non-cancer cells. One of the most critical mechanisms of cell cycle regulation is via the cyclin-dependent kinases (CDKs), which connect resource availability sensing and growth signaling with cell division and transcription elongation processes. Novel combination therapy approaches to co-target cell cycle and transcriptional CDKs may improve cancer-specific targeting of CDK dysfunction. In the current study, we assessed the effectiveness of fadraciclib, a new CDK2/9 inhibitor, for the treatment of advanced colorectal cancer (CRC).

Methodology: A panel of eighteen CRC patient-derived organoids (PDOs) was used to assess the efficacy of fadraciclib. Efficacy was further validated in patient-derived xenografts (PDXs). CDK2/9 target inhibition, cell cycle arrest, and cell killing mechanisms were investigated using western blotting, flow cytometry, and immunofluorescence staining, respectively.

Results: CRC PDOs exhibited greater sensitivity to fadraciclib compared to chemotherapy and palbociclib. This efficacy was validated in vivo using three matched PDXs, showing significant tumor growth inhibition with fadraciclib compared to vehicle (P < .05) and no serious adverse effects. Fadraciclib induced G2/M cell cycle arrest, leading to multipolar mitosis and anaphase catastrophe.

Conclusions and implications: Our results using patient-derived models suggest that fadraciclib is a promising therapy for advanced CRC by inhibiting CDKs 2 and 9, which affects critical pathways in cell cycle regulation and transcription.

背景和目的:真核细胞对细胞分裂的控制受到严格调控,细胞周期检查点的功能障碍是恶性转化的一个关键标志,它促进了非癌细胞的适应性优势。细胞周期调控的最关键机制之一是通过周期蛋白依赖激酶(CDKs),它将资源可用性感知和生长信号与细胞分裂和转录延伸过程联系起来。新的联合治疗方法共同靶向细胞周期和转录CDK可能改善癌症特异性靶向CDK功能障碍。在目前的研究中,我们评估了fadraciclib(一种新的CDK2/9抑制剂)治疗晚期结直肠癌(CRC)的有效性。方法:一组18例CRC患者来源的类器官(PDOs)被用来评估fadraciclib的疗效。在患者来源的异种移植物(PDXs)中进一步验证了疗效。分别用western blotting、流式细胞术和免疫荧光染色研究CDK2/9的靶点抑制、细胞周期阻滞和细胞杀伤机制。结果:与化疗和帕博西尼相比,结直肠癌PDOs对fadraciclib表现出更高的敏感性。结论和意义:我们使用患者衍生模型的研究结果表明,fadraciclib通过抑制cdk2和9(影响细胞周期调节和转录的关键途径),是一种很有希望的晚期CRC治疗药物。
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引用次数: 0
Evolutionary medicine of emunctory functions of the kidney: an empirical review. 肾脏排空功能的进化医学:实证回顾。
IF 2.1 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2025-08-05 eCollection Date: 2025-01-01 DOI: 10.1093/emph/eoaf019
Noel T Boaz, Robert L Chevalier

Primitive emunctory functions to expel harmful substances from cells and the interstitial space of multicellular organisms evolved over the past billion and a half years into the complex physiology of the metanephric kidney. Integrative biology allows empirical testing of hypotheses of the origins of renal structures from homologous single-celled precursors. Emunctory cell complexes called nephridia evolved in metazoan (cnidarian) ancestors 750 million years ago (mya). The pronephric kidney was a metameric structure that evolved some 700 mya in early bilaterians to excrete waste products through nephridial slits in the body wall from head to tail. The mesonephric kidney evolved 635 mya when pharyngeal slits differentiated into filter-feeding gills and a heart-kidney evolved in later bilaterians. The mesonephric filtering glomeruli lost their external exits through the body wall and now drained through an internal mesonephric duct into the coelom. When chordates moved into fresh water from the sea 588 mya the high-pressure glomerulus evolved in the mesonephros, increasing water excretion. Tetrapods moved onto land losing the buoyancy of water. Blood pressure and glomerular filtration rose and the metanephric kidney evolved in amniotes. The high pressure-flow glomerulus predisposes podocytes to injury and detachment leading to sclerosis, whereas the high mitochondrial activity of the tubule contributes to susceptibility to ischemia, hypoxia, and oxidative injury. The kidney evolved a counter-current mechanism and urea cycle to optimize water retention. Perturbations in the complex development of the metanephric kidney, which parallels its phylogeny, explain many renal pathologies, which are traceable to these adaptations.

多细胞生物从细胞和间质中排出有害物质的原始排泄功能,在过去的15亿年里进化成了后肾的复杂生理机能。综合生物学允许对肾脏结构起源于同源单细胞前体的假设进行实证检验。被称为肾盂的排泄细胞复合物在7.5亿年前的后生动物(刺胞动物)祖先中进化而来。肾原肾是一种特异结构,在大约700万年前的早期双边动物中进化而来,通过体壁上的肾缝从头到尾排泄废物。635万年前,当咽缝分化为滤食性鳃时,中肾进化为中肾,在后来的双边动物中进化为心肾。中肾滤过的肾小球失去了通过体壁的外部出口,现在通过内中肾管排入体腔。当脊索动物在588万年前从海洋迁移到淡水中时,高压肾小球在中肾中进化,增加了水的排泄。四足动物移到陆地上,失去了水的浮力。羊膜内血压和肾小球滤过率升高,后肾进化。高压血流的肾小球易使足细胞损伤和脱离导致硬化,而小管的高线粒体活性则易导致缺血、缺氧和氧化损伤。肾脏进化出逆流机制和尿素循环来优化水潴留。后肾复杂发育中的扰动与其系统发育相似,解释了许多可追溯到这些适应的肾脏病理。
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引用次数: 0
Higher blood lipid levels after the transition to menopause in two forager-horticulturalist populations. 在两个采集者-园艺师人群过渡到更年期后血脂水平升高。
IF 2.1 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2025-07-20 eCollection Date: 2025-01-01 DOI: 10.1093/emph/eoaf020
M J Getz, J E Aronoff, C L Jenkins, S Ghafoor, J Vazquez, N T Appel, M Gatz, D K Cummings, P L Hooper, B Beheim, K H Buetow, C E Finch, G S Thomas, J Stieglitz, M Gurven, H Kaplan, B C Trumble

Background: Reproduction affects health and longevity among females across the life course. While significant focus has been devoted to the role of menarche, menopause remains understudied. Most menopause research is conducted in industrialized populations, where the risk of cardiovascular diseases increases progressively during the menopausal transition.

Methodology: We worked with the Tsimane, Indigenous Bolivian forager-farmers with physically active lifestyles, and the Moseten, genetically and culturally related horticulturalists experiencing greater market integration. We assessed relationships between menopause status and lipid biomarkers (HDL, LDL, non-HDL, total cholesterol, triglycerides, and apolipoprotein-B). Using linear mixed-effects models, in an all-age sample of n = 1,121 women (15-92 years) we found positive associations between menopausal status and most lipid levels.

Results: Menopause was associated with 5.0% higher total cholesterol (b = 7.038 mg/dL, P = .001), 9.4% higher LDL (b = 5.147 mg/dL, P = .017), 5.9% higher non-HDL cholesterol (b = 8.071 mg/dL, P < .001), 11.3% higher triglycerides (b = 19.119 mg/dL, P < .001), and 1.5% higher apolipoprotein-B (b = 0.248 mg/dL, P = .001), controlling for age, body mass index (BMI), year of data collection, and population. In contrast, HDL did not vary with menopause status.

Conclusions: After controlling for age, BMI, and year of data collection, post-menopausal lipid profiles among the Tsimane across six biomarkers are 2-7 times lower than those documented in U.S./U.K. populations. These results support existing literature that documents distinct shifts in lipid profiles during and after the menopause transition in industrialized populations. Further, our results suggest lipids increase post-menopause similarly to those of industrialized populations, despite the differential diet, physical activity, fertility, and hormone exposure in industrialized environments.

Lay summary: Menopause is a relatively rare life history trait primarily studied in industrial populations. We examined relationships between menopause and cardiovascular disease risk biomarkers in two forager-horticulturalist populations. We found positive associations between menopause and total cholesterol, HDL, LDL, non-HDL, triglycerides, and apolipoprotein-B, suggesting lipid increases post-menopause are a human universal.

背景:生殖影响女性一生的健康和寿命。虽然人们对月经初潮的作用已经有了很大的关注,但对更年期的研究仍然不足。大多数更年期研究是在工业化人口中进行的,在这些人口中,心血管疾病的风险在更年期过渡期间逐渐增加。研究方法:我们与提斯曼人(Tsimane)和莫塞滕人(Moseten)合作,前者是玻利维亚土著的采食农民,他们的生活方式很活跃,后者是与基因和文化相关的园艺家,经历了更大的市场一体化。我们评估了绝经状态与脂质生物标志物(HDL、LDL、非HDL、总胆固醇、甘油三酯和载脂蛋白b)之间的关系。使用线性混合效应模型,在一个全年龄的样本n = 1121名妇女(15-92岁)中,我们发现绝经状态和大多数脂质水平呈正相关。结果:绝经与总胆固醇升高5.0%相关(b = 7.038 mg/dL, P = 0.05)。低密度脂蛋白升高9.4% (b = 5.147 mg/dL, P = 0.001)。017),非高密度脂蛋白胆固醇升高5.9% (b = 8.071 mg/dL, P P P =。001),控制年龄、体重指数(BMI)、数据收集年份和人口。相反,HDL与绝经状态无关。结论:在控制了年龄、BMI和数据收集年份后,Tsimane的六种生物标志物的绝经后脂质谱比美国/英国记录的低2-7倍人群。这些结果支持了现有文献记载的工业化人群在绝经期间和绝经后脂质谱的明显变化。此外,我们的研究结果表明,尽管工业化环境中的饮食、体力活动、生育能力和激素暴露有所不同,但绝经后的脂质增加与工业化人群相似。摘要:绝经是一种相对罕见的生活史特征,主要在工业人群中研究。我们在两个采集者-园艺师人群中研究了更年期与心血管疾病风险生物标志物之间的关系。我们发现绝经与总胆固醇、高密度脂蛋白、低密度脂蛋白、非高密度脂蛋白、甘油三酯和载脂蛋白b呈正相关,表明绝经后脂质增加是人类的普遍现象。
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引用次数: 0
High water turnover, hydration status, and heat stress among Daasanach pastoralists in a hot, semi-arid climate. 高水分周转,水合状态和热应激在炎热,半干旱气候中的Daasanach牧民。
IF 2.1 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2025-07-18 eCollection Date: 2025-01-01 DOI: 10.1093/emph/eoaf017
Amanda McGrosky, Leslie Ford, Elena Hinz, Srishti Sadhir, Faith Wambua, David R Braun, Matthew Douglass, Emmanuel Ndiema, Rosemary Nzunza, Asher Y Rosinger, Herman Pontzer

Background and objectives: Water is essential for proper physiological function. As temperatures increase, populations may struggle to meet water needs despite adaptations or acclimation; chronic dehydration can cause kidney damage. We evaluate how daily water requirements are associated with ambient temperature (ambT), wet bulb globe temperature (WBGT), urine specific gravity (USG; marker of hydration status), and albumin:creatinine ratio (ACR; kidney function biomarker) among Daasanach pastoralists living in a hot, dry northern Kenyan climate.

Methodology: Water turnover (WT), USG, and ACR were measured using deuterium depletion (WT), refractometry (USG), and urine dipstick (ACR) for 76 participants aged 5-68 years in June 2022-23. Relationships between WT, ambT, WBGT, USG, and ACR were evaluated using linear and generalized linear models.

Results: Adult WT was higher than mean values worldwide, peaking around 7 l/day. Water demands increase from childhood through middle age before falling in later life. Adult WT was not correlated with ambT or WBGT. About 2/11 children's and 7/36 adults' USG indicated dehydration; USG was not correlated with child WT but was negatively correlated with adult WT when accounting for body size. WT was lower among adults with high (≥30 mg/g) ACR; high ACR was associated with higher USG.

Conclusions and implications: High Daasanach WT is likely driven by hot, semi-arid conditions, and lifestyle, rather than by compromised kidney function. Most participants were well-hydrated. Despite nonsignificant correlations between temperature and adult WT, high WT highlights the physiological demands of hot, dry climates. As climate change increases the global population exposed to hotter temperatures, global water needs will likely increase.

背景和目的:水是正常生理功能所必需的。随着气温升高,尽管适应或适应环境,人口仍可能难以满足用水需求;慢性脱水会导致肾脏损伤。我们评估了生活在肯尼亚北部炎热干燥气候中的Daasanach牧民的日常需水量与环境温度(ambT)、全球湿球温度(WBGT)、尿液比重(USG)、水合状态标志物和白蛋白:肌酐比(ACR)之间的关系。方法:在2022-23年6月对76名年龄在5-68岁之间的参与者使用氘耗尽(WT)、折射仪(USG)和尿量尺(ACR)测量水周转率(WT)、USG和ACR。使用线性和广义线性模型评估WT、ambT、WBGT、USG和ACR之间的关系。结果:成人WT高于全球平均值,在7l /d左右达到峰值。从童年到中年,水的需求量增加,然后在晚年下降。成人WT与ambT或WBGT无关。约2/11的儿童和7/36的成人USG显示脱水;USG与儿童WT不相关,但在考虑体型时与成人WT呈负相关。高ACR(≥30 mg/g)的成人WT较低;高ACR与高USG相关。结论和意义:高肾素WT可能是由炎热、半干旱条件和生活方式驱动的,而不是由肾功能受损引起的。大多数参与者水分充足。尽管温度与成年体WT之间的相关性不显著,但高WT强调了炎热干燥气候的生理需求。随着气候变化使全球人口暴露在更高的温度下,全球对水的需求可能会增加。
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引用次数: 0
'Everyone in my family has C-sections': increased likelihood of caesarean birth in family lineages in the United States. “我们家的每个人都做过剖腹产”:在美国,家族血统中剖腹产的可能性增加。
IF 2.1 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2025-07-15 eCollection Date: 2025-01-01 DOI: 10.1093/emph/eoaf018
Kathleen M Hanlon-Lundberg

Caesarean birth has multiple, interrelated, and often mutually reinforcing bio-social etiologies. Evolutionary consequences of caesarean are uncertain. The goal of this study is to determine if caesarean births are more likely within family lineages by connecting and comparing lifetime birth experience (caesarean, vaginal) of individual women and generations of their families. A secondary goal is to identify potential parity differences between birth modes. Qualitative and quantitative methods were used to evaluate women's birth narratives of their own births and births to their maternal relatives: grandmothers, mothers, sisters, daughters. Participant data was analysed by birth year cohort and by familial generation (Grandmother, Mother, Index, and Daughter). 107 women participated in the study. Parous daughters of women who experienced any caesarean were more likely to experience caesarean than were daughters of women experiencing all vaginal birth (P = .0002; relative risk 2.1 [1.53-2.88]). Prevalence of any caesarean per mother is higher than the per-birth caesarean rate (44/107, 41.12% versus 71/229, 31.00%; P = .03). Parity was higher for women experiencing all vaginal births than all caesarean (2.14 versus 1.79; P = .03), yet highest for those experiencing any caesarean (2.75; P = .01). Caesarean for any indication is more common among daughters of mothers who themselves experienced any caesarean than those who experienced all vaginal births. Individual lifetime caesarean experience is more prevalent than commonly construed based on caesarean per live birth rate. Clustering of cesarean within families suggests that operative birth is altering our bio-social selves in potentially heritable ways.

剖宫产有多重的、相互关联的、往往相互加强的生物社会病因。剖腹产的进化后果尚不确定。本研究的目的是通过联系和比较个体女性及其家族几代人的一生分娩经历(剖腹产、阴道分娩),来确定在家族谱系中剖腹产是否更容易发生。第二个目标是确定分娩方式之间潜在的胎次差异。使用定性和定量方法来评估妇女对自己的分娩和对其母系亲属(祖母、母亲、姐妹、女儿)的分娩的叙述。参与者数据按出生年份队列和家族世代(祖母、母亲、指数和女儿)进行分析。107名女性参与了这项研究。剖宫产妇女的女儿比阴道分娩妇女的女儿更容易发生剖宫产(P = 0.0002;相对风险2.1[1.53-2.88])。单次剖宫产率高于单次剖宫产率(44/107,41.12% vs 71/229, 31.00%; P = 0.03)。阴道分娩的女性胎次高于剖腹产(2.14 vs 1.79; P =。03),但剖腹产的比例最高(2.75;P = 0.01)。任何指征的剖腹产在自己经历过剖腹产的母亲的女儿中比那些经历过阴道分娩的母亲的女儿更常见。个人终生剖腹产经历比通常根据每活产剖腹产率进行的解释更为普遍。剖宫产在家庭中的聚集表明,手术分娩正在以潜在的遗传方式改变我们的生物社会自我。
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引用次数: 0
Retraction and replacement of: Regulating community well-being through traditional mourning rituals: Insights from the Luhya People of Kenya. 撤回和替代:通过传统哀悼仪式调节社区福祉:来自肯尼亚卢希亚人的见解。
IF 2.1 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2025-07-09 eCollection Date: 2025-01-01 DOI: 10.1093/emph/eoaf013

[This retracts the article DOI: 10.1093/emph/eoaf001.].

[本文撤回文章DOI: 10.1093/emph/eoaf001.]。
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引用次数: 0
Regulating community well-being through traditional mourning rituals: Insights from the Luhya People of Kenya. 通过传统哀悼仪式调节社区福祉:来自肯尼亚卢希亚人的见解。
IF 2.1 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2025-07-09 eCollection Date: 2025-01-01 DOI: 10.1093/emph/eoaf012
Stephen Asatsa, Sheina Lew-Levy, Stephen Ngaari Mbugua, Maria Ntaragwe, Wilkister Shanyisa, Elizabeth Gichimu, Jane Nambiri, Jonathan Omuchesi

Background and objectives: Rituals have been reported to serve as a vital mechanism for expressing grief and fostering communal support worldwide. Despite these benefits, use of rituals in Indigenous communities is threatened by missionization, globalization, and westernization. This study sought to examine the relevance of traditional mourning rituals in community morality and well-being. Anchored in cultural evolutionary theory, the study employed an ethnographic research design.

Methodology: Data were collected from 45 community elders, 30 bereaved adults, 30 bereaved adolescents, and 8 religious leaders through focus group discussions and interviews.

Results: The study established five mourning rituals practiced by the Luhya people, each potentially serving an evolutionary function for community survival and well-being. Our findings show that Luhya traditional mourning rituals play an important role in community well-being, though not all members may benefit equally from these effects.

Conclusions and implications: The study established conflict over rituals with differing viewpoints from religious leaders, cultural leaders, and the western biomedical approach to mental well-being. Yet, the bereaved reported that both Luhya and religious rituals helped them process their grief. To address mental health issues fully, it is important to establish collaboration between western models, religious approaches, and cultural approaches.

背景和目的:据报道,仪式是全世界表达悲痛和促进社区支持的重要机制。尽管有这些好处,在土著社区中,仪式的使用受到了传教、全球化和西方化的威胁。本研究旨在探讨传统哀悼仪式与社区道德和福祉的相关性。该研究以文化进化理论为基础,采用了民族志研究设计。方法:采用焦点小组讨论和访谈的方式,对45名社区长者、30名丧亲成人、30名丧亲青少年和8名宗教领袖进行数据收集。结果:该研究确定了Luhya人的五种哀悼仪式,每种仪式都可能为社区生存和福祉提供进化功能。我们的研究结果表明,Luhya传统的哀悼仪式在社区福祉中发挥着重要作用,尽管并非所有成员都能平等地从这些影响中受益。结论和启示:本研究建立了宗教领袖、文化领袖和西方生物医学方法对心理健康的不同观点的仪式冲突。然而,丧亲者报告说,卢海亚和宗教仪式都帮助他们处理了悲伤。为了充分解决心理健康问题,重要的是在西方模式、宗教方法和文化方法之间建立合作。
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引用次数: 0
Survival, resistance, and fitness dynamics of Escherichia coli populations after prolonged exposure to copper. 长时间接触铜后大肠杆菌种群的生存、抗性和适应性动态。
IF 2.1 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2025-07-02 eCollection Date: 2025-01-01 DOI: 10.1093/emph/eoaf015
Sada Boyd-Vorsah, Arturo Torres Ortiz, Sophia Pulido, Brian Bui, Pamela J Yeh

Background and objectives: Copper is an essential micronutrient and a widely used antimicrobial, yet its widespread application may accelerate microbial resistance. We investigated how long-term copper (II) sulfate (CuSO₄) exposure drives genetic and phenotypic changes in Escherichia coli, focusing on survival, resistance mechanisms, and antibiotic cross-resistance.

Methodology: Fifty E. coli populations were evolved for 55 days under progressively increasing CuSO₄ concentrations. Whole-genome sequencing (WGS) identified genetic adaptations, while phenotypic changes were assessed using minimum inhibitory concentration (MIC) and fitness assays across CuSO₄ and antibiotic gradients.

Results: CuSO₄ imposed strong selective pressure, with only 16% of populations surviving prolonged exposure. Survivors exhibited up to eight-fold increases in CuSO₄ resistance, though some reverted to ancestral resistance levels when selective pressure was removed. Fitness assays showed that CuSO₄-selected populations maintained significantly higher fitness in high CuSO₄ environments than controls and ancestors (P < .001). WGS revealed diverse mutations in stress-response and metal-tolerance genes (cusA, acrB, corA, fur, and ybhA) without a single resistance signature. Although antibiotic cross-resistance was not observed, some CuSO₄-selected populations displayed elevated MICs for levofloxacin, colistin, trimethoprim, fosfomycin, and meropenem. Similar trends in controls suggest that additional factors, such as adaptation to laboratory media, also contribute to resistance.

Conclusions and implications: CuSO₄ exerts strong and variable selective pressure on E. coli populations, promoting diverse resistance pathways through distinct genetic and physiological mechanisms. While some CuSO₄-selected strains exhibited increased antibiotic resistance, trends in controls highlight the complexity of resistance evolution. These findings emphasize the need to monitor copper-driven antimicrobial resistance.

背景与目的:铜是人体必需的微量营养素和广泛使用的抗微生物药物,但其广泛应用可能会加速微生物的耐药性。我们研究了长期硫酸铜(CuSO₄)暴露如何驱动大肠杆菌的遗传和表型变化,重点关注存活、耐药机制和抗生素交叉耐药。方法:50个大肠杆菌群体在逐渐增加的硫酸铜浓度下进化55天。全基因组测序(WGS)确定了遗传适应性,同时使用最低抑制浓度(MIC)和适应度分析评估了表型变化,这些变化横跨CuSO 4和抗生素梯度。结果:CuSO 4施加了很强的选择压力,只有16%的种群在长时间暴露下存活。幸存者表现出高达8倍的CuSO 4抗性增加,尽管一些恢复到祖先的抗性水平,当选择压力被移除。适应度分析显示,与对照组和祖先(P cusA、acrB、corA、fur和ybhA)相比,硫酸钙选择的种群在高硫酸钙环境中保持了显著更高的适应度,而没有单一的抗性特征。虽然没有观察到抗生素交叉耐药,但一些CuSO 4选择的人群显示左氧氟沙星,粘菌素,甲氧苄啶,磷霉素和美罗培南的mic升高。控制方面的类似趋势表明,对实验室媒介的适应等其他因素也有助于产生耐药性。结论和意义:硫酸铜对大肠杆菌群体施加强大而多变的选择压力,通过不同的遗传和生理机制促进多种抗性途径。虽然一些CuSO 4选择菌株表现出增加的抗生素耐药性,但对照的趋势突出了耐药性进化的复杂性。这些发现强调了监测铜驱动的抗菌素耐药性的必要性。
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引用次数: 0
Within-host population dynamics of extensively drug-resistant Mycobacterium tuberculosis revealed by an over 3-year longitudinal study. 一项超过3年的纵向研究揭示了广泛耐药结核分枝杆菌宿主种群动态。
IF 2.1 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2025-07-01 eCollection Date: 2025-01-01 DOI: 10.1093/emph/eoaf014
Peng Xu, Xuecong Zhang, Chi Wu, Yiwang Chen, Wenjie Lai, Liyong Liu, Jialei Liang, Dan Li, Ruimin Hong, Senlin Zhan, Peize Zhang, Howard Takiff, Guofang Deng, Jiuxin Qu, Qian Gao

Background and objectives: Drug resistance is a major contributor to tuberculosis (TB) deaths worldwide. Understanding the dynamics of in-host evolution of Mycobacterium tuberculosis (MTB) drug resistance can help to improve treatment success rates.

Methodology: The microevolution of drug-resistant MTB was studied in three patients with long-standing, extensively drug-resistant TB (XDR-TB) by analyzing whole genome sequences of serial isolates collected during treatment.

Results: We identified three patterns of in vivo MTB microevolution during long-term, ineffective treatment: (i) new drug-resistant subpopulations emerge and compete with other subpopulations during treatment; (ii) drug resistance profiles remaining stable without the emergence of new drug-resistant subpopulations; and (iii) after a drug is stopped, new drug-resistant subpopulations continue to emerge and compete with existing subpopulations.

Conclusions and implications: The microevolution of drug-resistant MTB within patients on long-term ineffective treatment is complex. Subpopulations with different resistance-conferring mutations can compete with each other and with newly emerged subpopulations. Often, one subpopulation eventually dominates and achieves long-term stability. This work deepens the understanding of MTB microevolution in XDR-TB patients.

背景和目的:耐药性是全世界结核病死亡的一个主要原因。了解结核分枝杆菌(MTB)耐药在宿主内进化的动态有助于提高治疗成功率。方法:通过分析治疗期间收集的系列分离株的全基因组序列,研究了3例长期广泛耐药结核病(XDR-TB)患者耐药MTB的微进化。结果:在长期无效治疗期间,我们确定了三种体内MTB微进化模式:(i)在治疗期间出现新的耐药亚群并与其他亚群竞争;(ii)在没有出现新的耐药亚群的情况下,耐药概况保持稳定;(iii)停药后,新的耐药亚群继续出现并与现有的亚群竞争。结论和意义:长期无效治疗的耐药MTB患者的微进化是复杂的。具有不同抗性突变的亚种群可以相互竞争,也可以与新出现的亚种群竞争。通常,一个亚种群最终占主导地位并实现长期稳定。这项工作加深了对广泛耐药结核病患者MTB微进化的理解。
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Evolution, Medicine, and Public Health
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