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Cesarean section and breastfeeding outcomes in an Indigenous Qom community with high breastfeeding support. 高母乳喂养支持的库姆土著社区剖宫产和母乳喂养结果。
IF 3.7 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2022-01-01 DOI: 10.1093/emph/eoab045
Melanie Martin, Monica Keith, Sofía Olmedo, Deja Edwards, Alicia Barrientes, Anwesha Pan, Claudia Valeggia

Background and objectives: Cesarean section may lead to suboptimal breastfeeding outcomes, though evidence has been mixed. Factors, such as premature birth, birth weight and maternal age may independently increase risk of cesarean and hinder breastfeeding initiation, while maternal preferences, support and sociostructural barriers may influence breastfeeding practices beyond the immediate postpartum period.

Methodology: We assessed impacts of cesarean section and gestational factors on breastfeeding duration among Indigenous Qom mothers in Argentina who have strong traditional breastfeeding support. We modeled transitions from exclusive breastfeeding to complementary feeding and from complementary feeding to full weaning in a Bayesian time-to-event framework with birth mode and gestational covariates (n = 89 infants).

Results: Estimated median time to full weaning was 30 months. Cesarean-delivered babies were weaned an average of 5 months later adjusting for gestational age, maternal parity and infant sex. No factors were associated with time-to-complementary feeding, and time-to-complementary feeding was not associated with time-to-full weaning.

Conclusions and implications: Among Indigenous Qom mothers in Argentina, cesarean section was not associated with suboptimal breastfeeding outcomes. Although some Qom mothers do experience early breastfeeding problems, particularly following first birth, problems are not more frequent following cesarean delivery. Traditional postpartum kin and community support during prolonged postpartum periods may be instrumental in helping mothers to overcome early breastfeeding problems due to cesarean or other risk factors.

背景和目的:剖宫产可能导致母乳喂养不理想的结果,尽管证据不一。早产、出生体重和母亲年龄等因素可能单独增加剖宫产的风险并阻碍母乳喂养的开始,而母亲的偏好、支持和社会结构障碍可能影响产后后期的母乳喂养做法。方法:我们评估了剖宫产和妊娠因素对阿根廷土著库姆母亲母乳喂养持续时间的影响,这些母亲有很强的传统母乳喂养支持。我们在贝叶斯时间到事件框架中模拟了从纯母乳喂养到补充喂养以及从补充喂养到完全断奶的过渡,包括出生方式和妊娠协变量(n = 89名婴儿)。结果:估计中位完全断奶时间为30个月。根据胎龄、产妇胎次和婴儿性别调整后,剖宫产的婴儿平均在5个月后断奶。没有任何因素与补充喂养的时间相关,补充喂养的时间与完全断奶的时间无关。结论和意义:在阿根廷的土著库姆母亲中,剖宫产与次优母乳喂养结果无关。虽然一些库姆母亲确实经历过早期母乳喂养问题,特别是在第一次分娩后,但剖宫产后的问题并不常见。传统的产后亲属和社区支持在产后延长期间可能有助于帮助母亲克服由于剖宫产或其他风险因素造成的早期母乳喂养问题。
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引用次数: 2
Mutation rate of SARS-CoV-2 and emergence of mutators during experimental evolution. 实验进化过程中SARS-CoV-2的突变率及突变体的出现
IF 3.7 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2022-01-01 DOI: 10.1093/emph/eoac010
Massimo Amicone, Vítor Borges, Maria João Alves, Joana Isidro, Líbia Zé-Zé, Sílvia Duarte, Luís Vieira, Raquel Guiomar, João Paulo Gomes, Isabel Gordo

Background and objectives: To understand how organisms evolve, it is fundamental to study how mutations emerge and establish. Here, we estimated the rate of mutation accumulation of SARS-CoV-2 in vitro and investigated the repeatability of its evolution when facing a new cell type but no immune or drug pressures.

Methodology: We performed experimental evolution with two strains of SARS-CoV-2, one carrying the originally described spike protein (CoV-2-D) and another carrying the D614G mutation that has spread worldwide (CoV-2-G). After 15 passages in Vero cells and whole genome sequencing, we characterized the spectrum and rate of the emerging mutations and looked for evidences of selection across the genomes of both strains.

Results: From the frequencies of the mutations accumulated, and excluding the genes with signals of selection, we estimate a spontaneous mutation rate of 1.3 × 10 -6 ± 0.2 × 10-6 per-base per-infection cycle (mean across both lineages of SARS-CoV-2 ± 2SEM). We further show that mutation accumulation is larger in the CoV-2-D lineage and heterogeneous along the genome, consistent with the action of positive selection on the spike protein, which accumulated five times more mutations than the corresponding genomic average. We also observe the emergence of mutators in the CoV-2-G background, likely linked to mutations in the RNA-dependent RNA polymerase and/or in the error-correcting exonuclease protein.

Conclusions and implications: These results provide valuable information on how spontaneous mutations emerge in SARS-CoV-2 and on how selection can shape its genome toward adaptation to new environments. Lay Summary: Each time a virus replicates inside a cell, errors (mutations) occur. Here, via laboratory propagation in cells originally isolated from the kidney epithelium of African green monkeys, we estimated the rate at which the SARS-CoV-2 virus mutates-an important parameter for understanding how it can evolve within and across humans. We also confirm the potential of its Spike protein to adapt to a new environment and report the emergence of mutators-viral populations where mutations occur at a significantly faster rate.

背景和目的:为了了解生物是如何进化的,研究突变是如何出现和建立的是基础。在这里,我们在体外估计了SARS-CoV-2的突变积累率,并研究了在面对新细胞类型但没有免疫或药物压力时其进化的可重复性。方法:我们对两株SARS-CoV-2进行了实验进化,一株携带最初描述的刺突蛋白(CoV-2-D),另一株携带已在全球传播的D614G突变(CoV-2-G)。在Vero细胞中进行15次传代和全基因组测序后,我们对新出现的突变谱和速率进行了表征,并在这两个菌株的基因组中寻找选择的证据。结果:根据累积的突变频率,排除具有选择信号的基因,我们估计每个碱基每个感染周期的自发突变率为1.3 × 10-6±0.2 × 10-6 (SARS-CoV-2±2SEM两个谱系的平均值)。我们进一步发现,CoV-2-D谱系中的突变积累更大,并且在基因组中具有异质性,这与刺突蛋白的正选择作用一致,刺突蛋白的突变积累是相应基因组平均值的5倍。我们还观察到在CoV-2-G背景中出现突变,可能与RNA依赖性RNA聚合酶和/或纠错外切酶蛋白的突变有关。结论和意义:这些结果为SARS-CoV-2的自发突变如何出现以及选择如何塑造其基因组以适应新环境提供了有价值的信息。摘要:每次病毒在细胞内复制时,都会发生错误(突变)。在这里,通过在最初从非洲绿猴肾上皮分离的细胞中进行实验室繁殖,我们估计了SARS-CoV-2病毒的变化率——这是了解它如何在人类内部和跨人类进化的一个重要参数。我们还证实了其Spike蛋白适应新环境的潜力,并报告了突变体的出现-突变发生速度明显更快的病毒种群。
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引用次数: 81
How a pregnant woman's relationships with her siblings relate to her mental health: a prenatal allocare perspective. 孕妇与兄弟姐妹的关系如何影响其心理健康:产前分配的视角。
IF 3.3 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2021-12-20 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoab044
Molly Fox, Kyle S Wiley

Background: In cooperatively breeding species, individuals may promote their inclusive fitness through allomothering. Humans exhibit some features of cooperative breeding, and previous studies have focused on allomothering by grandparents and juvenile siblings in the postnatal period. We hypothesize that a pregnant woman's relationships with her siblings (offspring's maternal aunts and uncles) are beneficial for maternal affect in ways that can enhance the siblings' inclusive fitness. Maternal affect during pregnancy is a salient target of allocare given the detrimental effects of antepartum mood disorders on birth and infant outcomes.

Methodology: We test our hypotheses in a cohort of pregnant Latina women in Southern California (N = 201). Predictor variables of interest include number of siblings a participant has, if she has sisters, frequency of seeing siblings, and frequency of communication with siblings. Outcome variables measuring maternal affect include depression, state anxiety, pregnancy-related anxiety and perceived stress.

Results: Having at least one sister and greater frequency of communication with siblings were associated with fewer depressive symptoms during pregnancy. No significant associations were found between sibling variables and other measures of affect.

Conclusion and implications: Results suggest that how frequently you communicate with, and not how often you see, siblings could be protective against risk of antepartum depression. Sibling allomothering could impart effects through social-emotional support rather than instrumental support, as a strategy to benefit the prenatal environment in which future nieces and nephews develop. Allomothering may be particularly important in cultural contexts that value family relationships. Future studies should investigate other communities.

背景在合作繁殖的物种中,个体可能会通过异体交配来提高自身的包容性。人类表现出合作繁殖的一些特征,以前的研究主要集中于祖父母和幼年兄弟姐妹在出生后的异母关系。我们假设,孕妇与兄弟姐妹(后代的舅舅和姨妈)的关系有利于母性情感,从而提高兄弟姐妹的包容性适存度。鉴于产前情绪失调对分娩和婴儿结局的不利影响,孕期的母性情绪是一个突出的分配目标:我们在南加州拉丁裔孕妇队列(N = 201)中检验了我们的假设。我们关注的预测变量包括受试者有多少兄弟姐妹、是否有姐妹、与兄弟姐妹见面的频率以及与兄弟姐妹交流的频率。测量母亲情绪的结果变量包括抑郁、状态焦虑、与怀孕有关的焦虑和感知压力:结果:至少有一个姐妹和与兄弟姐妹交流更频繁与孕期抑郁症状较少有关。结论和启示:结果表明,与兄弟姐妹交流的频率与孕期抑郁症状的减少有关:研究结果表明,与兄弟姐妹交流的频率(而非见面的频率)可能会降低产前抑郁的风险。兄弟姐妹之间的同母异父关系可能会通过社会情感支持而非工具性支持产生影响,这是一种有利于未来侄女和侄子成长的产前环境的策略。在重视家庭关系的文化背景下,同母异父可能尤为重要。未来的研究应调查其他社区。
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引用次数: 0
Daily rhythms of both host and parasite affect antimalarial drug efficacy. 宿主和寄生虫的日常节律都影响抗疟药物的疗效。
IF 3.7 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2021-01-01 DOI: 10.1093/emph/eoab013
Alíz T Y Owolabi, Sarah E Reece, Petra Schneider

Background and objectives: Circadian rhythms contribute to treatment efficacy in several non-communicable diseases. However, chronotherapy (administering drugs at a particular time-of-day) against infectious diseases has been overlooked. Yet, the daily rhythms of both hosts and disease-causing agents can impact the efficacy of drug treatment. We use the rodent malaria parasite Plasmodium chabaudi, to test whether the daily rhythms of hosts, parasites and their interactions affect sensitivity to the key antimalarial, artemisinin.

Methodology: Asexual malaria parasites develop rhythmically in the host's blood, in a manner timed to coordinate with host daily rhythms. Our experiments coupled or decoupled the timing of parasite and host rhythms, and we administered artemisinin at different times of day to coincide with when parasites were either at an early (ring) or later (trophozoite) developmental stage. We quantified the impacts of parasite developmental stage, and alignment of parasite and host rhythms, on drug sensitivity.

Results: We find that rings were less sensitive to artemisinin than trophozoites, and this difference was exacerbated when parasite and host rhythms were misaligned, with little direct contribution of host time-of-day on its own. Furthermore, the blood concentration of haem at the point of treatment correlated positively with artemisinin efficacy but only when parasite and host rhythms were aligned.

Conclusions and implications: Parasite rhythms influence drug sensitivity in vivo. The hitherto unknown modulation by alignment between parasite and host daily rhythms suggests that disrupting the timing of parasite development could be a novel chronotherapeutic approach.

Lay summary: We reveal that chronotherapy (providing medicines at a particular time-of-day) could improve treatment for malaria infections. Specifically, parasites' developmental stage at the time of treatment and the coordination of timing between parasite and host both affect how well antimalarial drug treatment works.

背景和目的:昼夜节律有助于几种非传染性疾病的治疗效果。然而,针对传染病的时间疗法(在一天中的特定时间给药)一直被忽视。然而,宿主和致病因子的日常节律都会影响药物治疗的效果。我们使用啮齿动物疟原虫chabaudi来测试宿主、寄生虫及其相互作用的日常节律是否会影响对关键抗疟疾药物青蒿素的敏感性。方法:无性疟原虫在宿主血液中有节律地发育,其方式与宿主的日常节律相协调。我们的实验耦合或解耦了寄生虫和宿主节律的时间,我们在一天中的不同时间给药青蒿素,以配合寄生虫处于早期(环)或后期(滋养体)发育阶段。我们量化了寄生虫发育阶段以及寄生虫和宿主节律对药物敏感性的影响。结果:我们发现环对青蒿素的敏感性低于滋养体,当寄生虫和宿主的节律不一致时,这种差异会加剧,宿主自身的直接贡献很少。此外,治疗时血凝素浓度与青蒿素疗效呈正相关,但只有在寄生虫和宿主节律一致的情况下。结论和意义:寄生虫节律影响体内药物敏感性。迄今为止未知的寄生虫和宿主日常节律之间的调节表明,破坏寄生虫发育的时间可能是一种新的时间治疗方法。摘要:我们发现时间疗法(在一天中的特定时间提供药物)可以改善疟疾感染的治疗。具体来说,治疗时寄生虫的发育阶段以及寄生虫和宿主之间的时间协调都会影响抗疟药物治疗的效果。
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引用次数: 8
Immune function during pregnancy varies between ecologically distinct populations. 怀孕期间的免疫功能因生态不同的人群而异。
IF 3.3 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2020-07-03 eCollection Date: 2020-01-01 DOI: 10.1093/emph/eoaa022
Carmen Hové, Benjamin C Trumble, Amy S Anderson, Jonathan Stieglitz, Hillard Kaplan, Michael D Gurven, Aaron D Blackwell

Background and objectives: Among placental mammals, females undergo immunological shifts during pregnancy to accommodate the fetus (i.e. fetal tolerance). Fetal tolerance has primarily been characterized within post-industrial populations experiencing evolutionarily novel conditions (e.g. reduced pathogen exposure), which may shape maternal response to fetal antigens. This study investigates how ecological conditions affect maternal immune status during pregnancy by comparing the direction and magnitude of immunological changes associated with each trimester among the Tsimane (a subsistence population subjected to high pathogen load) and women in the USA.

Methodology: Data from the Tsimane Health and Life History Project (N = 935) and the National Health and Nutrition Examination Survey (N = 1395) were used to estimate population-specific effects of trimester on differential leukocyte count and C-reactive protein (CRP), a marker of systemic inflammation.

Results: In both populations, pregnancy was associated with increased neutrophil prevalence, reduced lymphocyte and eosinophil count and elevated CRP. Compared to their US counterparts, pregnant Tsimane women exhibited elevated lymphocyte and eosinophil counts, fewer neutrophils and monocytes and lower CRP. Total leukocyte count remained high and unchanged among pregnant Tsimane women while pregnant US women exhibited substantially elevated counts, resulting in overlapping leukocyte prevalence among all third-trimester individuals.

Conclusions and implications: Our findings indicate that ecological conditions shape non-pregnant immune baselines and the magnitude of immunological shifts during pregnancy via developmental constraints and current trade-offs. Future research should investigate how such flexibility impacts maternal health and disease susceptibility, particularly the degree to which chronic pathogen exposure might dampen inflammatory response to fetal antigens.

Lay summary: This study compares immunological changes associated with pregnancy between the Tsimane (an Amazonian subsistence population) and individuals in the USA. Results suggest that while pregnancy enhances non-specific defenses and dampens both antigen-specific immunity and parasite/allergy response, ecological conditions strongly influence immune baselines and the magnitude of shifts during gestation.

背景和目的:在胎盘哺乳动物中,雌性在怀孕期间经历免疫变化以适应胎儿(即胎儿耐受)。胎儿耐受性主要是在经历进化新条件(例如病原体暴露减少)的后工业化人群中表现出来的,这可能会影响母体对胎儿抗原的反应。本研究通过比较美国提斯曼人(一种受高病原体负荷影响的自给人口)和妇女在每个妊娠期的免疫变化方向和幅度,探讨了生态条件如何影响孕妇的免疫状态。方法:采用来自Tsimane健康和生活史项目(N = 935)和国家健康和营养检查调查(N = 1395)的数据来估计孕期对差异白细胞计数和c反应蛋白(CRP)的人群特异性影响,c反应蛋白是全身性炎症的标志。结果:在这两个人群中,怀孕与中性粒细胞患病率增加、淋巴细胞和嗜酸性粒细胞计数减少以及CRP升高有关。与美国孕妇相比,提斯曼孕妇的淋巴细胞和嗜酸性粒细胞计数升高,中性粒细胞和单核细胞减少,CRP降低。齐曼孕妇的白细胞总数仍然很高,没有变化,而美国孕妇的白细胞总数明显升高,导致所有妊娠晚期个体的白细胞患病率重叠。结论和意义:我们的研究结果表明,生态条件通过发育限制和当前权衡,塑造了非怀孕期免疫基线和怀孕期间免疫变化的幅度。未来的研究应该调查这种灵活性如何影响孕产妇健康和疾病易感性,特别是慢性病原体暴露可能在多大程度上抑制对胎儿抗原的炎症反应。摘要:本研究比较了Tsimane(亚马逊生存人口)和美国个体与怀孕相关的免疫变化。结果表明,虽然妊娠增强了非特异性防御,抑制了抗原特异性免疫和寄生虫/过敏反应,但生态条件强烈影响妊娠期间的免疫基线和变化幅度。
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引用次数: 0
Comparative psychopharmacology of autism and psychotic-affective disorders suggests new targets for treatment. 自闭症和精神情感障碍的比较精神药理学为治疗提供了新的靶点。
IF 3.3 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2019-08-26 eCollection Date: 2019-01-01 DOI: 10.1093/emph/eoz022
Bernard J Crespi

The first treatments showing effectiveness for some psychiatric disorders, such as lithium for bipolar disorder and chlorpromazine for schizophrenia, were discovered by accident. Currently, psychiatric drug design is seen as a scientific enterprise, limited though it remains by the complexity of brain development and function. Relatively few novel and effective drugs have, however, been developed for many years. The purpose of this article is to demonstrate how evolutionary biology can provide a useful framework for psychiatric drug development. The framework is based on a diametrical nature of autism, compared with psychotic-affective disorders (mainly schizophrenia, bipolar disorder and depression). This paradigm follows from two inferences: (i) risks and phenotypes of human psychiatric disorders derive from phenotypes that have evolved along the human lineage and (ii) biological variation is bidirectional (e.g. higher vs lower, faster vs slower, etc.), such that dysregulation of psychological traits varies in two opposite ways. In this context, the author review the evidence salient to the hypothesis that autism and psychotic-affective disorders represent diametrical disorders in terms of current, proposed and potential psychopharmacological treatments. Studies of brain-derived neurotrophic factor, the PI3K pathway, the NMDA receptor, kynurenic acid metabolism, agmatine metabolism, levels of the endocannabinoid anandamide, antidepressants, anticonvulsants, antipsychotics, and other treatments, demonstrate evidence of diametric effects in autism spectrum disorders and phenotypes compared with psychotic-affective disorders and phenotypes. These findings yield insights into treatment mechanisms and the development of new pharmacological therapies, as well as providing an explanation for the longstanding puzzle of antagonism between epilepsy and psychosis. Lay Summary: Consideration of autism and schizophrenia as caused by opposite alterations to brain development and function leads to novel suggestions for pharmacological treatments.

第一批显示出对某些精神疾病有效的治疗方法,如锂治疗双相情感障碍和氯丙嗪治疗精神分裂症,是偶然发现的。目前,精神药物设计被视为一项科学事业,尽管它仍然受到大脑发育和功能复杂性的限制。然而,多年来开发出的新药和有效药物相对较少。这篇文章的目的是展示进化生物学如何为精神药物的开发提供一个有用的框架。该框架基于自闭症与精神情感障碍(主要是精神分裂症、双相情感障碍和抑郁症)的截然相反的性质。该范式由两个推论得出:(i)人类精神疾病的风险和表型源于沿着人类谱系进化的表型;(ii)生物变异是双向的(例如,高与低、快与慢等),因此心理特征的失调以两种相反的方式变化。在这种背景下,作者回顾了自闭症和精神性情感障碍在当前、拟议和潜在的心理药理学治疗方面代表截然相反的障碍这一假设的显著证据。对脑源性神经营养因子、PI3K通路、NMDA受体、犬尿烯酸代谢、胍丁胺代谢、内源性大麻素阿那达明水平、抗抑郁药、抗惊厥药、抗精神病药和其他治疗方法的研究表明,与精神情感障碍和表型相比,自闭症谱系障碍和表型存在直接影响。这些发现深入了解了治疗机制和新药物疗法的发展,并为癫痫和精神病之间长期存在的拮抗作用提供了解释。综述:考虑到自闭症和精神分裂症是由大脑发育和功能的相反改变引起的,这为药物治疗带来了新的建议。
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引用次数: 0
Autism and psychosis as diametrical disorders of embodiment. 自闭症和精神病是截然相反的病症的具体体现。
IF 3.7 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2019-07-15 eCollection Date: 2019-01-01 DOI: 10.1093/emph/eoz021
Bernard Crespi, Natalie Dinsdale

Humans have evolved an elaborate system of self-consciousness, self-identity, self-agency, and self-embodiment that is grounded in specific neurological structures including an expanded insula. Instantiation of the bodily self has been most-extensively studied via the 'rubber hand illusion', whereby parallel stimulation of a hidden true hand, and a viewed false hand, leads to the felt belief that the false hand is one's own. Autism and schizophrenia have both long been regarded as conditions centrally involving altered development of the self, but they have yet to be compared directly with regard to the self and embodiment. Here, we synthesize the embodied cognition literature for these and related conditions, and describe evidence that these two sets of disorders exhibit opposite susceptibilities from typical individuals to the rubber hand illusion: reduced on the autism spectrum and increased in schizophrenia and other psychotic-affective conditions. Moreover, the opposite illusion effects are mediated by a consilient set of associated phenomena, including empathy, interoception, anorexia risk and phenotypes, and patterns of genetic correlation. Taken together, these findings: (i) support the diametric model of autism and psychotic-affective disorders, (ii) implicate the adaptive human system of self-embodiment, and its neural bases, in neurodevelopmental disorders, and suggest new therapies and (iii) experimentally ground Bayesian predictive coding models with regard to autism compared with psychosis. Lay summary: Humans have evolved a highly developed sense of self and perception of one's own body. The 'rubber hand illusion' can be used to test individual variation in sense of self, relative to connection with others. We show that this illusion is reduced in autism spectrum disorders, and increased in psychotic and mood disorders. These findings have important implications for understanding and treatment of mental disorders.

人类进化出了一个复杂的自我意识、自我认同、自我代理和自我体现系统,该系统以特定的神经结构为基础,包括扩大的脑岛。身体自我的实例化已经通过“橡皮手错觉”得到了最广泛的研究,通过这种错觉,对隐藏的真手和被看到的假手的平行刺激,会导致人们相信假手是自己的。长期以来,自闭症和精神分裂症都被认为是涉及自我发展变化的集中疾病,但它们还没有直接与自我和化身进行比较。在这里,我们综合了这些和相关条件的具体认知文献,并描述了证据,证明这两组障碍表现出典型个体对橡皮手幻觉的相反易感性:在自闭症谱系中减少,在精神分裂症和其他精神病情感条件中增加。此外,相反的幻觉效应是由一系列一致的相关现象介导的,包括移情、互感、厌食症风险和表型,以及遗传相关性模式。总之,这些发现:(i)支持自闭症和精神病情感障碍的径向模型,(ii)将自我体现的适应性人类系统及其神经基础与神经发育障碍联系起来,并提出了新的治疗方法,(iii)与精神病相比,自闭症的贝叶斯预测编码模型具有实验基础。概述:人类已经进化出高度发达的自我意识和对自己身体的感知。“橡皮手错觉”可以用来测试个人自我意识相对于与他人联系的变化。我们发现,这种幻觉在自闭症谱系障碍中减少,在精神病和情绪障碍中增加。这些发现对理解和治疗精神障碍具有重要意义。
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引用次数: 22
Differences in mutational processes and intra-tumour heterogeneity between organs: The local selective filter hypothesis. 器官间突变过程和肿瘤内异质性的差异:局部选择性过滤器假说。
IF 3.3 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2019-06-07 eCollection Date: 2019-01-01 DOI: 10.1093/emph/eoz017
Mathieu Giraudeau, Tuul Sepp, Beata Ujvari, François Renaud, Aurélie Tasiemski, Benjamin Roche, Jean-Pascal Capp, Frédéric Thomas

Extensive diversity (genetic, cytogenetic, epigenetic and phenotypic) exists within and between tumours, but reasons behind these variations, as well as their consistent hierarchical pattern between organs, are poorly understood at the moment. We argue that these phenomena are, at least partially, explainable by the evolutionary ecology of organs' theory, in the same way that environmental adversity shapes mutation rates and level of polymorphism in organisms. Organs in organisms can be considered as specialized ecosystems that are, for ecological and evolutionary reasons, more or less efficient at suppressing tumours. When a malignancy does arise in an organ applying strong selection pressure on tumours, its constituent cells are expected to display a large range of possible surviving strategies, from hyper mutator phenotypes relying on bet-hedging to persist (high mutation rates and high diversity), to few poorly variable variants that become invisible to natural defences. In contrast, when tumour suppression is weaker, selective pressure favouring extreme surviving strategies is relaxed, and tumours are moderately variable as a result. We provide a comprehensive overview of this hypothesis. Lay summary: Different levels of mutations and intra-tumour heterogeneity have been observed between cancer types and organs. Anti-cancer defences are unequal between our organs. We propose that mostly aggressive neoplasms (i.e. higher mutational and ITH levels), succeed in emerging and developing in organs with strong defences.

肿瘤内部和肿瘤之间存在广泛的多样性(遗传、细胞遗传学、表观遗传学和表型),但目前对这些变异背后的原因以及器官之间一致的分级模式知之甚少。我们认为,这些现象至少部分可以用器官进化生态学理论来解释,就像环境逆境影响生物体的突变率和多态性水平一样。生物体内的器官可以被视为专门的生态系统,由于生态和进化的原因,它们或多或少都能抑制肿瘤。当恶性肿瘤确实出现在对肿瘤施加强大选择压力的器官中时,其组成细胞预计会表现出一系列可能的生存策略,从依赖赌注对冲的超突变表型持续存在(高突变率和高多样性),到自然防御看不到的少数变异性差的变体。相反,当肿瘤抑制较弱时,有利于极端生存策略的选择性压力就会放松,因此肿瘤会适度变化。我们对这一假设进行了全面的概述。综述:在癌症类型和器官之间观察到不同水平的突变和死后异质性。抗肿瘤防御在我们的器官之间是不平等的。我们提出,大多数侵袭性肿瘤(即较高的突变和ITH水平)在具有强大防御能力的器官中成功出现和发展。
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引用次数: 0
Evolutionary origins of polycystic ovary syndrome: An environmental mismatch disorder. 多囊卵巢综合征的进化起源:一种环境不匹配障碍。
IF 3.3 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2019-03-26 eCollection Date: 2019-01-01 DOI: 10.1093/emph/eoz011
Mia A Charifson, Benjamin C Trumble

Polycystic ovary syndrome (PCOS) is the most common female endocrine disorder and has important evolutionary implications for female reproduction and health. PCOS presents an interesting paradox, as it results in significant anovulation and potential sub-fecundity in industrialized populations, yet it has a surprisingly high prevalence and has a high heritability. In this review, we discuss an overview of PCOS, current diagnostic criteria, associated hormonal pathways and a review of proposed evolutionary hypotheses for the disorder. With a multifactorial etiology that includes ovarian function, metabolism, insulin signaling and multiple genetic risk alleles, PCOS is a complex disorder. We propose that PCOS is a mismatch between previously neutral genetic variants that evolved in physically active subsistence settings that have the potential to become harmful in sedentary industrialized environments. Sedentary obesogenic environments did not exist in ancestral times and exacerbate many of these pathways, resulting in the high prevalence and severity of PCOS today. Overall, the negative impacts of PCOS on reproductive success would likely have been minimal during most of human evolution and unlikely to generate strong selection. Future research and preventative measures should focus on these gene-environment interactions as a form of evolutionary mismatch, particularly in populations that are disproportionately affected by obesity and metabolic disorders.

Lay summary: The most severe form of polycystic ovary syndrome (PCOS) is likely a result of interactions between genetic predispositions for PCOS and modern obesogenic environments. PCOS would likely have been less severe ancestrally and the fitness reducing effects of PCOS seen today are likely a novel product of sedentary, urban environments.

多囊卵巢综合征(PCOS)是最常见的女性内分泌紊乱,对女性生殖和健康具有重要的进化意义。多囊卵巢综合征是一个有趣的悖论,因为它会导致工业化人群中显著的无排卵和潜在的亚生殖能力,但它的患病率却高得惊人,遗传力也很高。在这篇综述中,我们讨论了多囊卵巢综合征的概述、当前的诊断标准、相关的激素途径以及对该疾病进化假说的综述。多囊卵巢综合征是一种复杂的疾病,其病因包括卵巢功能、代谢、胰岛素信号传导和多种遗传风险等位基因。我们认为,多囊卵巢综合征是在体力活动的生存环境中进化而来的先前中性基因变体之间的不匹配,这些变体在久坐的工业化环境中有可能变得有害。久坐性肥胖环境在祖先时代并不存在,并加剧了其中许多途径,导致今天多囊卵巢综合征的高发病率和严重程度。总的来说,在人类进化的大部分时间里,多囊卵巢综合征对生殖成功的负面影响可能是最小的,不太可能产生强有力的选择。未来的研究和预防措施应将重点放在这些基因与环境的相互作用上,将其作为一种进化不匹配的形式,特别是在受肥胖和代谢紊乱影响过大的人群中。简要介绍:最严重的多囊卵巢综合征(PCOS)可能是PCOS遗传易感性与现代肥胖环境相互作用的结果。从癌症角度来看,多囊卵巢综合征可能不那么严重,而今天看到的多囊卵巢综合症降低体质的影响可能是久坐的城市环境的新产物。
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引用次数: 0
Genome-wide association analysis uncovers variants for reproductive variation across dog breeds and links to domestication. 全基因组关联分析揭示了不同犬种的生殖变异及其与驯化的联系。
IF 3.7 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2019-01-01 DOI: 10.1093/emph/eoz015
Samuel P Smith, Julie B Phillips, Maddison L Johnson, Patrick Abbot, John A Capra, Antonis Rokas

Background and objectives: The diversity of eutherian reproductive strategies has led to variation in many traits, such as number of offspring, age of reproductive maturity and gestation length. While reproductive trait variation has been extensively investigated and is well established in mammals, the genetic loci contributing to this variation remain largely unknown. The domestic dog, Canis lupus familiaris is a powerful model for studies of the genetics of inherited disease due to its unique history of domestication. To gain insight into the genetic basis of reproductive traits across domestic dog breeds, we collected phenotypic data for four traits, cesarean section rate, litter size, stillbirth rate and gestation length, from primary literature and breeders' handbooks.

Methodology: By matching our phenotypic data to genomic data from the Cornell Veterinary Biobank, we performed genome-wide association analyses for these four reproductive traits, using body mass and kinship among breeds as covariates.

Results: We identified 12 genome-wide significant associations between these traits and genetic loci, including variants near CACNA2D3 with gestation length, MSRB3 and MSANTD1 with litter size, SMOC2 with cesarean section rate and UFM1 with stillbirth rate. A few of these loci, such as CACNA2D3 and MSRB3, have been previously implicated in human reproductive pathologies, whereas others have been associated with domestication-related traits, including brachycephaly (SMOC2) and coat curl (KRT71).

Conclusions and implications: We hypothesize that the artificial selection that gave rise to dog breeds also influenced the observed variation in their reproductive traits. Overall, our work establishes the domestic dog as a system for studying the genetics of reproductive biology and disease.

Lay summary: The genetic contributors to variation in mammalian reproductive traits remain largely unknown. We took advantage of the domestic dog, a powerful model system, to test for associations between genome-wide variants and four reproductive traits (cesarean section rate, litter size, stillbirth rate and gestation length) that vary extensively across breeds. We identified associations at a dozen loci, including ones previously associated with domestication-related traits, suggesting that selection on dog breeds also influenced their reproductive traits.

背景与目的:真动物生殖策略的多样性导致了许多性状的变化,如后代数量、生殖成熟年龄和妊娠期长度。虽然哺乳动物的生殖性状变异已被广泛研究并得到了很好的证实,但导致这种变异的遗传位点在很大程度上仍是未知的。由于其独特的驯化历史,家犬狼疮是研究遗传疾病遗传学的有力模型。为了深入了解家犬品种生殖性状的遗传基础,我们从原始文献和育种者手册中收集了四个性状的表型数据,即剖宫产率、产仔数、死胎率和妊娠期长。方法:通过将我们的表型数据与康奈尔兽医生物库的基因组数据相匹配,我们使用体重和品种间的亲缘关系作为协变量,对这四种生殖性状进行了全基因组关联分析。结果:我们确定了这些性状与遗传位点之间的12个全基因组显著关联,包括CACNA2D3附近的变异与妊娠期长度,MSRB3和MSANTD1与产仔数,SMOC2与剖宫产率,UFM1与死产率。这些基因座中的一些,如CACNA2D3和MSRB3,先前与人类生殖疾病有关,而其他基因座则与驯化相关的性状有关,包括短头畸形(SMOC2)和毛卷曲(KRT71)。结论和启示:我们假设,人工选择产生的犬种也影响了其生殖性状的变化。总的来说,我们的工作建立了家犬作为研究生殖生物学和疾病遗传学的系统。概要:哺乳动物生殖性状变异的遗传因素在很大程度上仍然未知。我们利用了家犬这一强大的模型系统,来测试全基因组变异与四种生殖性状(剖宫产率、产仔数、死胎率和妊娠期长短)之间的关系,这些性状在不同品种之间差异很大。我们在十几个位点上发现了关联,包括那些先前与驯化相关的性状相关的位点,这表明对狗品种的选择也影响了它们的生殖性状。
{"title":"Genome-wide association analysis uncovers variants for reproductive variation across dog breeds and links to domestication.","authors":"Samuel P Smith,&nbsp;Julie B Phillips,&nbsp;Maddison L Johnson,&nbsp;Patrick Abbot,&nbsp;John A Capra,&nbsp;Antonis Rokas","doi":"10.1093/emph/eoz015","DOIUrl":"https://doi.org/10.1093/emph/eoz015","url":null,"abstract":"<p><strong>Background and objectives: </strong>The diversity of eutherian reproductive strategies has led to variation in many traits, such as number of offspring, age of reproductive maturity and gestation length. While reproductive trait variation has been extensively investigated and is well established in mammals, the genetic loci contributing to this variation remain largely unknown. The domestic dog, <i>Canis lupus familiaris</i> is a powerful model for studies of the genetics of inherited disease due to its unique history of domestication. To gain insight into the genetic basis of reproductive traits across domestic dog breeds, we collected phenotypic data for four traits, cesarean section rate, litter size, stillbirth rate and gestation length, from primary literature and breeders' handbooks.</p><p><strong>Methodology: </strong>By matching our phenotypic data to genomic data from the Cornell Veterinary Biobank, we performed genome-wide association analyses for these four reproductive traits, using body mass and kinship among breeds as covariates.</p><p><strong>Results: </strong>We identified 12 genome-wide significant associations between these traits and genetic loci, including variants near <i>CACNA2D3</i> with gestation length, <i>MSRB3</i> and <i>MSANTD1</i> with litter size, <i>SMOC2</i> with cesarean section rate and <i>UFM1</i> with stillbirth rate. A few of these loci, such as <i>CACNA2D3</i> and <i>MSRB3</i>, have been previously implicated in human reproductive pathologies, whereas others have been associated with domestication-related traits, including brachycephaly (<i>SMOC2</i>) and coat curl (<i>KRT71</i>).</p><p><strong>Conclusions and implications: </strong>We hypothesize that the artificial selection that gave rise to dog breeds also influenced the observed variation in their reproductive traits. Overall, our work establishes the domestic dog as a system for studying the genetics of reproductive biology and disease.</p><p><strong>Lay summary: </strong>The genetic contributors to variation in mammalian reproductive traits remain largely unknown. We took advantage of the domestic dog, a powerful model system, to test for associations between genome-wide variants and four reproductive traits (cesarean section rate, litter size, stillbirth rate and gestation length) that vary extensively across breeds. We identified associations at a dozen loci, including ones previously associated with domestication-related traits, suggesting that selection on dog breeds also influenced their reproductive traits.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":"2019 1","pages":"93-103"},"PeriodicalIF":3.7,"publicationDate":"2019-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1093/emph/eoz015","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10407873","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
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Evolution, Medicine, and Public Health
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