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Implications of leg length for metabolic health and fitness. 腿长对代谢健康和体能的影响。
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-07-21 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac023
Meghan K Shirley, Owen J Arthurs, Kiran K Seunarine, Tim J Cole, Simon Eaton, Jane E Williams, Chris A Clark, Jonathan C K Wells

Background and objectives: Several studies have linked longer legs with favorable adult metabolic health outcomes and greater offspring birth weight. A recent Mendelian randomization study suggested a causal link between height and cardiometabolic risk; however, the underlying reasons remain poorly understood.

Methodology: Using a cross-sectional design, we tested in a convenience sample of 70 healthy young women whether birth weight and tibia length as markers of early-life conditions associated more strongly with metabolically beneficial traits like organ size and skeletal muscle mass (SMM) than a statistically derived height-residual variable indexing later, more canalized growth.

Results: Consistent with the 'developmental origins of health and disease' hypothesis, we found relatively strong associations of tibia length-but not birth weight-with adult organ size, brain size, SMM and resting energy expenditure measured by magnetic resonance imaging (MRI), dual-energy X-ray absorptiometry and indirect calorimetry, respectively.

Conclusions and implications: Building on prior work, these results suggest that leg length is a sensitive marker of traits directly impacting metabolic and reproductive health. Alongside findings in the same sample relating tibia length and height-residual to MRI-measured pelvic dimensions, we suggest there may exist a degree of coordination in the development of long bone, lean mass and pelvic traits, possibly centered on early, pre-pubertal growth periods. Such phenotypic coordination has important implications for fitness, serving to benefit both adult health and the health of offspring in subsequent generations.

背景和目的:有几项研究表明,腿长与成人代谢健康状况良好和后代出生体重较大有关。最近的一项孟德尔随机研究表明,身高与心脏代谢风险之间存在因果关系;然而,人们对其根本原因仍知之甚少:方法:我们采用横断面设计,在 70 名健康年轻女性的便利样本中测试了出生体重和胫骨长度作为早期生活条件的标记,是否比统计得出的身高残差变量更能与器官大小和骨骼肌质量(SMM)等对代谢有益的性状相关联,而后者反映的是后期更为渠化的生长:结果:与 "健康和疾病的发育起源 "假说一致,我们发现胫骨长度(而非出生体重)与成年器官大小、大脑大小、骨骼肌质量和静息能量消耗(分别通过磁共振成像(MRI)、双能 X 射线吸收测定法和间接热量测定法测量)有相对较强的关联:在先前研究的基础上,这些结果表明腿长是直接影响代谢和生殖健康特征的敏感标记。我们在同一样本中发现,胫骨长度和身高残差与核磁共振成像测量的骨盆尺寸相关,这表明长骨、瘦体重和骨盆特征的发展可能存在一定程度的协调,其中心可能是青春期前的早期生长期。这种表型协调对体质有重要影响,有利于成年后的健康和后代的健康。
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引用次数: 0
Tradeoffs in milk immunity affect infant infectious disease risk. 牛奶免疫力的权衡会影响婴儿患传染病的风险。
IF 3.3 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2022-06-13 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac020
Katherine Wander, Masako Fujita, Siobhan M Mattison, Margaret Duris, Megan Gauck, Tessa Hopt, Katherine Lacy, Angela Foligno, Rebecca Ulloa, Connor Dodge, Frida Mowo, Ireen Kiwelu, Blandina T Mmbaga

Background and objectives: The human immune system has evolved to balance protection against infection with control of immune-mediated damage and tolerance of commensal microbes. Such tradeoffs between protection and harm almost certainly extend to the immune system of milk.

Methodology: Among breastfeeding mother-infant dyads in Kilimanjaro, Tanzania, we characterized in vitro proinflammatory milk immune responses to Salmonella enterica (an infectious agent) and Escherichia coli (a benign target) as the increase in interleukin-6 after 24 h of incubation with each bacterium. We characterized incident infectious diseases among infants through passive monitoring. We used Cox proportional hazards models to describe associations between milk immune activity and infant infectious disease.

Results: Among infants, risk for respiratory infections declined with increasing milk in vitro proinflammatory response to S. enterica (hazard ratio [HR]: 0.68; 95% confidence interval [CI]: 0.54, 0.86; P: 0.001), while risk for gastrointestinal infections increased with increasing milk in vitro proinflammatory response to E. coli (HR: 1.44; 95% CI: 1.05, 1.99; P: 0.022). Milk proinflammatory responses to S. enterica and E. coli were positively correlated (Spearman's rho: 0.60; P: 0.000).

Conclusions and implications: These findings demonstrate a tradeoff in milk immune activity: the benefits of appropriate proinflammatory activity come at the hazard of misdirected proinflammatory activity. This tradeoff is likely to affect infant health in complex ways, depending on prevailing infectious disease conditions. How mother-infant dyads optimize proinflammatory milk immune activity should be a central question in future ecological-evolutionary studies of the immune system of milk.

背景和目的:人类的免疫系统在进化过程中,既要防止感染,又要控制免疫介导的损伤,还要耐受共生微生物。这种保护与伤害之间的权衡几乎肯定会延伸到乳汁的免疫系统:方法:在坦桑尼亚乞力马扎罗山的母乳喂养母婴二人组中,我们通过体外白细胞介素-6的增加来描述乳汁对肠炎沙门氏菌(传染性病原体)和大肠杆菌(良性目标)的促炎性免疫反应。我们通过被动监测来描述婴儿感染传染病的情况。我们使用 Cox 比例危险模型来描述牛奶免疫活性与婴儿传染病之间的关系:结果:在婴儿中,呼吸道感染的风险随着牛奶对肠炎双球菌体外促炎反应的增加而降低(危险比 [HR]:0.68;95% 置信区间 [CI]:0.54,0.86;P:0.001),而胃肠道感染的风险随着牛奶对大肠杆菌体外促炎反应的增加而增加(HR:1.44;95% CI:1.05,1.99;P:0.022)。牛奶对肠炎球菌和大肠杆菌的促炎反应呈正相关(Spearman's rho:0.60;P:0.000):这些研究结果表明了牛奶免疫活动中的权衡问题:适当的促炎活动的益处是以错误的促炎活动的危害为代价的。这种权衡可能会以复杂的方式影响婴儿的健康,这取决于当时的传染病状况。母婴二元组合如何优化牛奶的促炎免疫活动,应该是未来牛奶免疫系统生态进化研究的一个核心问题。
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引用次数: 0
Multiple sclerosis and the microbiota: Progress in understanding the contribution of the gut microbiome to disease. 多发性硬化症和微生物群:了解肠道微生物群对疾病的贡献的进展。
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-06-13 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac009
Hendrik J Engelenburg, Paul J Lucassen, Joshua T Sarafian, William Parker, Jon D Laman

Multiple sclerosis (MS), a neurological autoimmune disorder, has recently been linked to neuro-inflammatory influences from the gut. In this review, we address the idea that evolutionary mismatches could affect the pathogenesis of MS via the gut microbiota. The evolution of symbiosis as well as the recent introduction of evolutionary mismatches is considered, and evidence regarding the impact of diet on the MS-associated microbiota is evaluated. Distinctive microbial community compositions associated with the gut microbiota of MS patients are difficult to identify, and substantial study-to-study variation and even larger variations between individual profiles of MS patients are observed. Furthermore, although some dietary changes impact the progression of MS, MS-associated features of microbiota were found to be not necessarily associated with diet per se. In addition, immune function in MS patients potentially drives changes in microbial composition directly, in at least some individuals. Finally, assessment of evolutionary histories of animals with their gut symbionts suggests that the impact of evolutionary mismatch on the microbiota is less concerning than mismatches affecting helminths and protists. These observations suggest that the benefits of an anti-inflammatory diet for patients with MS may not be mediated by the microbiota per se. Furthermore, any alteration of the microbiota found in association with MS may be an effect rather than a cause. This conclusion is consistent with other studies indicating that a loss of complex eukaryotic symbionts, including helminths and protists, is a pivotal evolutionary mismatch that potentiates the increased prevalence of autoimmunity within a population.

多发性硬化症(MS)是一种神经自身免疫性疾病,最近被发现与肠道的神经炎症影响有关。在这篇综述中,我们提出了进化错配可能通过肠道微生物群影响MS发病机制的观点。考虑了共生的进化以及最近引入的进化不匹配,并评估了饮食对ms相关微生物群影响的证据。与多发性硬化症患者肠道微生物群相关的独特微生物群落组成难以识别,并且观察到大量研究之间的差异,甚至多发性硬化症患者个体概况之间的差异更大。此外,尽管一些饮食变化会影响MS的进展,但发现与MS相关的微生物群特征并不一定与饮食本身相关。此外,至少在某些个体中,MS患者的免疫功能可能直接驱动微生物组成的变化。最后,对动物及其肠道共生体的进化史的评估表明,进化错配对微生物群的影响不如错配对蠕虫和原生生物的影响那么令人担忧。这些观察结果表明,抗炎饮食对多发性硬化症患者的益处可能不是由微生物群本身介导的。此外,任何与多发性硬化症相关的微生物群的改变都可能是结果而不是原因。这一结论与其他研究一致,这些研究表明,复杂真核共生体(包括蠕虫和原生生物)的缺失是一种关键的进化错配,从而增强了群体中自身免疫的患病率。
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引用次数: 3
Evolved resistance to a novel cationic peptide antibiotic requires high mutation supply. 对一种新型阳离子肽抗生素产生耐药性需要高突变供应。
IF 3.3 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2022-05-30 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac022
Alfonso Santos-Lopez, Melissa J Fritz, Jeffrey B Lombardo, Ansen H P Burr, Victoria A Heinrich, Christopher W Marshall, Vaughn S Cooper

Background and objectives: A key strategy for resolving the antibiotic resistance crisis is the development of new drugs with antimicrobial properties. The engineered cationic antimicrobial peptide WLBU2 (also known as PLG0206) is a promising broad-spectrum antimicrobial compound that has completed Phase I clinical studies. It has activity against Gram-negative and Gram-positive bacteria including infections associated with biofilm. No definitive mechanisms of resistance to WLBU2 have been identified.

Methodology: Here, we used experimental evolution under different levels of mutation supply and whole genome sequencing (WGS) to detect the genetic pathways and probable mechanisms of resistance to this peptide. We propagated populations of wild-type and hypermutator Pseudomonas aeruginosa in the presence of WLBU2 and performed WGS of evolved populations and clones.

Results: Populations that survived WLBU2 treatment acquired a minimum of two mutations, making the acquisition of resistance more difficult than for most antibiotics, which can be tolerated by mutation of a single target. Major targets of resistance to WLBU2 included the orfN and pmrB genes, previously described to confer resistance to other cationic peptides. More surprisingly, mutations that increase aggregation such as the wsp pathway were also selected despite the ability of WLBU2 to kill cells growing in a biofilm.

Conclusions and implications: The results show how experimental evolution and WGS can identify genetic targets and actions of new antimicrobial compounds and predict pathways to resistance of new antibiotics in clinical practice.

背景和目的:解决抗生素耐药性危机的关键策略是开发具有抗菌特性的新药。工程阳离子抗菌肽WLBU2(也称为PLG0206)是一种很有前途的广谱抗菌化合物,已完成I期临床研究。它对革兰氏阴性菌和革兰氏阳性菌具有活性,包括与生物膜相关的感染。目前尚未确定对WLBU2产生耐药性的确切机制。方法:在这里,我们使用不同突变供应水平下的实验进化和全基因组测序(WGS)来检测对该肽的遗传途径和可能的抗性机制。我们在WLBU2存在下繁殖野生型和高突变铜绿假单胞菌种群,并对进化的种群和克隆进行WGS。结果:WLBU2治疗后存活的人群获得了至少两个突变,这使得获得耐药性比大多数抗生素更困难,而大多数抗生素可以通过单个靶点的突变来耐受。对WLBU2抗性的主要靶标包括orfN和pmrB基因,它们先前被描述为赋予对其他阳离子肽的抗性。更令人惊讶的是,尽管WLBU2有能力杀死在生物膜中生长的细胞,但也选择了增加聚集的突变,如wsp途径。结论和意义:研究结果表明,在临床实践中,实验进化和WGS可以识别新的抗菌化合物的遗传靶标和作用,并预测新抗生素的耐药性途径。
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引用次数: 0
Which 'imperfect vaccines' encourage the evolution of higher virulence? 哪些 "不完善的疫苗 "会促使病毒进化出更强的毒性?
IF 3.3 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2022-04-26 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac015
James J Bull, Rustom Antia

Background and objectives: Theory suggests that some types of vaccines against infectious pathogens may lead to the evolution of variants that cause increased harm, particularly when they infect unvaccinated individuals. This theory was supported by the observation that the use of an imperfect vaccine to control Marek's disease virus in chickens resulted in the virus evolving to be more lethal to unvaccinated birds. This raises the concern that the use of some other vaccines may lead to similar pernicious outcomes. We examine that theory with a focus on considering the regimes in which such outcomes are expected.

Methodology: We evaluate the plausibility of assumptions in the original theory. The previous theory rested heavily on a particular form of transmission-mortality-recovery trade-off and invoked other assumptions about the pathways of evolution. We review alternatives to mortality in limiting transmission and consider evolutionary pathways that were omitted in the original theory.

Results: The regime where the pernicious evolutionary outcome occurs is narrowed by our analysis but remains possible in various scenarios. We propose a more nuanced consideration of alternative models for the within-host dynamics of infections and for factors that limit virulence. Our analysis suggests imperfect vaccines against many pathogens will not lead to the evolution of pathogens with increased virulence in unvaccinated individuals.

Conclusions and implications: Evolution of greater pathogen mortality driven by vaccination remains difficult to predict, but the scope for such outcomes appears limited. Incorporation of mechanistic details into the framework, especially regarding immunity, may be requisite for prediction accuracy.

Lay summary: A virus of chickens appears to have evolved high mortality in response to a vaccine that merely prevented disease symptoms. Theory has predicted this type of evolution in response to a variety of vaccines and other interventions such as drug treatment. Under what circumstances is this pernicious result likely to occur? Analysis of the theory in light of recent changes in our understanding of viral biology raises doubts that medicine-driven, pernicious evolution is likely to be common. But we are far from a mechanistic understanding of the interaction between pathogen and host that can predict when vaccines and other medical interventions will lead to the unwanted evolution of more virulent pathogens. So, while the regime where a pernicious result obtains may be limited, caution remains warranted in designing many types of interventions.

背景和目的:理论认为,某些类型的传染病病原体疫苗可能会导致变种的进化,从而造成更大的危害,尤其是当它们感染未接种疫苗的个体时。这一理论得到了以下观察结果的支持:使用不完善的疫苗控制鸡的马立克氏病病毒,导致病毒进化为对未接种疫苗的鸟类更具致命性。这不禁让人担心,其他一些疫苗的使用也可能导致类似的恶性结果。我们对这一理论进行了研究,重点是考虑预计会出现这种结果的制度:我们评估了原始理论中假设的合理性。以前的理论在很大程度上依赖于特定形式的传播-死亡率-恢复权衡,并援引了关于进化途径的其他假设。我们回顾了死亡率在限制传播中的替代作用,并考虑了原始理论中忽略的进化途径:结果:我们的分析缩小了恶性进化结果发生的范围,但在各种情况下仍有可能发生。我们建议对感染的宿主内动态和限制毒力的因素的替代模型进行更细致的考虑。我们的分析表明,针对许多病原体的不完善疫苗不会导致病原体在未接种疫苗个体中的毒力增强:结论:疫苗接种导致病原体死亡率增加的演变仍然难以预测,但这种结果的范围似乎有限。将机理细节纳入框架,特别是有关免疫的细节,可能是提高预测准确性的必要条件。理论已经预测了这种进化对各种疫苗和药物治疗等其他干预措施的反应。在什么情况下会出现这种恶性结果?根据我们对病毒生物学认识的最新变化对该理论进行分析后,我们怀疑由药物驱动的恶性进化可能很常见。但是,我们对病原体与宿主之间相互作用的机理认识还远远不够,无法预测疫苗和其他医疗干预措施何时会导致毒性更强的病原体发生不必要的进化。因此,虽然产生有害结果的机制可能有限,但在设计许多类型的干预措施时仍需谨慎。
{"title":"Which 'imperfect vaccines' encourage the evolution of higher virulence?","authors":"James J Bull, Rustom Antia","doi":"10.1093/emph/eoac015","DOIUrl":"10.1093/emph/eoac015","url":null,"abstract":"<p><strong>Background and objectives: </strong>Theory suggests that some types of vaccines against infectious pathogens may lead to the evolution of variants that cause increased harm, particularly when they infect unvaccinated individuals. This theory was supported by the observation that the use of an imperfect vaccine to control Marek's disease virus in chickens resulted in the virus evolving to be more lethal to unvaccinated birds. This raises the concern that the use of some other vaccines may lead to similar pernicious outcomes. We examine that theory with a focus on considering the regimes in which such outcomes are expected.</p><p><strong>Methodology: </strong>We evaluate the plausibility of assumptions in the original theory. The previous theory rested heavily on a particular form of transmission-mortality-recovery trade-off and invoked other assumptions about the pathways of evolution. We review alternatives to mortality in limiting transmission and consider evolutionary pathways that were omitted in the original theory.</p><p><strong>Results: </strong>The regime where the pernicious evolutionary outcome occurs is narrowed by our analysis but remains possible in various scenarios. We propose a more nuanced consideration of alternative models for the within-host dynamics of infections and for factors that limit virulence. Our analysis suggests imperfect vaccines against many pathogens will not lead to the evolution of pathogens with increased virulence in unvaccinated individuals.</p><p><strong>Conclusions and implications: </strong>Evolution of greater pathogen mortality driven by vaccination remains difficult to predict, but the scope for such outcomes appears limited. Incorporation of mechanistic details into the framework, especially regarding immunity, may be requisite for prediction accuracy.</p><p><strong>Lay summary: </strong>A virus of chickens appears to have evolved high mortality in response to a vaccine that merely prevented disease symptoms. Theory has predicted this type of evolution in response to a variety of vaccines and other interventions such as drug treatment. Under what circumstances is this pernicious result likely to occur? Analysis of the theory in light of recent changes in our understanding of viral biology raises doubts that medicine-driven, pernicious evolution is likely to be common. But we are far from a mechanistic understanding of the interaction between pathogen and host that can predict when vaccines and other medical interventions will lead to the unwanted evolution of more virulent pathogens. So, while the regime where a pernicious result obtains may be limited, caution remains warranted in designing many types of interventions.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2022-04-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9081871/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9381216","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Strength is negatively associated with depression and accounts for some of the sex difference: A replication and extension. 力量与抑郁呈负相关,并解释了一些性别差异:复制和延伸。
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-02-22 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac007
Caroline B Smith, Tom Rosenström, Edward H Hagen

Background: Depression occurs about twice as often in women as in men, a disparity that remains poorly understood. In a previous publication, Hagen and Rosenström predicted and found that grip strength, a highly sexually dimorphic index of physical formidability, mediated much of the effect of sex on depression. Striking results like this are more likely to be published than null results, potentially biasing the scientific record. It is therefore critical to replicate and extend them.

Methodology: Using new data from the 2013-14 cycle of the National Health and Nutrition Examination Survey, a nationally representative sample of US households (n = 3650), we replicated models of the effect of sex and grip strength on depression reported in Hagen and Rosenström, along with additional potential confounds and a new detailed symptom-level exploration.

Results: Overall, the effects from the original paper were reproduced although with smaller effect sizes. Grip strength mediated 38% of the effect of sex on depression, compared to 63% in Hagen and Rosenström. These results were extended with findings that grip strength had a stronger association with some depression symptoms, like suicidality, low interest and low mood than with other symptoms, like appetite changes.

Conclusions: Grip strength is negatively associated with depression, especially its cognitive-affective symptoms, controlling for numerous possible confounds. Although many factors influence depression, few of these reliably occur cross-culturally in a sex-stratified manner and so are unlikely to explain the well-established, cross-cultural sex difference in depression. The sex difference in upper body strength occurs in all populations and is therefore a candidate evolutionary explanation for some of the sex difference in depression. Lay summary: Why are women at twice the risk of developing depression as men? Depression typically occurs during social conflicts, such as physical or sexual abuse. Physically strong individuals can often single-handedly resolve conflicts in their favor, whereas physically weaker individuals often need help from others. We argue that depression is a credible cry for help. Because men generally have greater strength than women, we argue that men may be more likely to resolve conflicts using physical formidability and women to signal others for help. We find that higher grip strength is associated with lower depression, particularly symptoms like feeling down or thoughts of suicide and that strength accounts for part of the sex difference in rates of depression.

背景:女性患抑郁症的几率是男性的两倍,人们对这种差异知之甚少。在之前的一篇文章中,哈根和Rosenström预测并发现握力,一种高度性别二态的身体强健指数,在很大程度上介导了性对抑郁症的影响。像这样惊人的结果比无效的结果更有可能被发表,这可能会使科学记录产生偏差。因此,复制和扩展它们是至关重要的。方法:使用2013-14年全国健康和营养检查调查周期的新数据,一个具有全国代表性的美国家庭样本(n = 3650),我们复制了Hagen和Rosenström报告的性别和握力对抑郁症影响的模型,以及额外的潜在混淆和新的详细症状水平探索。结果:总体而言,原论文的效应得到了再现,尽管效应量较小。握力在性对抑郁的影响中占38%,而在哈根和Rosenström中占63%。这些结果还延伸了另一项发现,即握力与一些抑郁症状(如自杀、低兴趣和情绪低落)的联系比与食欲变化等其他症状的联系更强。结论:握力与抑郁症呈负相关,尤其是其认知-情感症状,控制了许多可能的混杂因素。尽管影响抑郁症的因素很多,但这些因素中很少有可靠的跨文化性别分层方式,因此不太可能解释抑郁症中公认的跨文化性别差异。上肢力量的性别差异在所有人群中都存在,因此,这是抑郁症的一些性别差异的候选进化解释。总结:为什么女性患抑郁症的风险是男性的两倍?抑郁症通常发生在社会冲突中,比如身体虐待或性虐待。身体强壮的人通常可以单枪匹马地解决对他们有利的冲突,而身体较弱的人往往需要别人的帮助。我们认为,抑郁症是一种可信的求救信号。因为男性通常比女性更有力量,我们认为男性可能更倾向于用强健的身体来解决冲突,而女性可能更倾向于向他人发出求助的信号。我们发现,握力越强,抑郁程度越低,尤其是情绪低落或有自杀念头等症状,握力越大,抑郁率的性别差异就越大。
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引用次数: 2
Serial passage in an insect host indicates genetic stability of the human probiotic Escherichia coli Nissle 1917. 在昆虫宿主中连续传代表明人类益生菌大肠杆菌Nissle 1917的遗传稳定性。
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-02-11 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac001
Nicolas C H Schröder, Ana Korša, Haleluya Wami, Olena Mantel, Ulrich Dobrindt, Joachim Kurtz

Background and objectives: The probiotic Escherichia coli strain Nissle 1917 (EcN) has been shown to effectively prevent and alleviate intestinal diseases. Despite the widespread medical application of EcN, we still lack basic knowledge about persistence and evolution of EcN outside the human body. Such knowledge is important also for public health aspects, as in contrast to abiotic therapeutics, probiotics are living organisms that have the potential to evolve. This study made use of experimental evolution of EcN in an insect host, the red flour beetle Tribolium castaneum, and its flour environment.

Methodology: Using a serial passage approach, we orally introduced EcN to larvae of T.castaneum as a new host, and also propagated it in the flour environment. After eight propagation cycles, we analyzed phenotypic attributes of the passaged replicate EcN lines, their effects on the host in the context of immunity and infection with the entomopathogen Bacillus thuringiensis, and potential genomic changes using WGS of three of the evolved lines.

Results: We observed weak phenotypic differences between the ancestral EcN and both, beetle and flour passaged EcN lines, in motility and growth at 30°C, but neither any genetic changes, nor the expected increased persistence of the beetle-passaged lines. One of these lines displayed distinct morphological and physiological characteristics.

Conclusions and implications: Our findings suggest that EcN remains rather stable during serial passage in an insect. Weak phenotypic changes in growth and motility combined with a lack of genetic changes indicate a certain degree of phenotypic plasticity of EcN.

Lay summary: For studying adaptation of the human probiotic Escherichia coli strain Nissle 1917, we introduced it to a novel insect host system and its environment using a serial passage approach. After passage, we observed weak phenotypic changes in growth and motility but no mutations or changes in persistence inside the host.

背景与目的:益生菌大肠杆菌Nissle 1917 (EcN)已被证明能有效预防和缓解肠道疾病。尽管EcN在医学上得到了广泛的应用,但我们对EcN在人体外的持久性和演化仍缺乏基本的了解。这些知识对公共卫生方面也很重要,因为与非生物疗法相比,益生菌是具有进化潜力的活生物体。本研究利用昆虫宿主赤粉甲虫(Tribolium castaneum)的EcN进化实验及其面粉环境。方法:采用连续传代法,将EcN作为新寄主口服于castaneum幼虫体内,并在面粉环境中进行繁殖。在8个繁殖周期后,我们分析了传代复制EcN系的表型属性,它们在免疫和感染苏云金芽孢杆菌的背景下对宿主的影响,以及使用WGS对3个进化系的潜在基因组变化。结果:我们观察到祖先EcN与甲虫和面粉传代的EcN系在30°C下的运动性和生长方面存在微弱的表型差异,但没有任何遗传变化,也没有预期的甲虫传代系的持久性增加。其中一个系表现出明显的形态和生理特征。结论和意义:我们的研究结果表明,在昆虫的连续传代过程中,EcN保持相当稳定。生长和运动的微弱表型变化加上缺乏遗传变化表明EcN具有一定的表型可塑性。摘要:为了研究人类益生菌大肠杆菌Nissle 1917菌株的适应性,我们采用串联传代的方法将其引入一个新的昆虫宿主系统及其环境中。传代后,我们观察到生长和运动的微弱表型变化,但在宿主体内没有突变或持久性变化。
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引用次数: 2
Immune cell type and DNA methylation vary with reproductive status in women: possible pathways for costs of reproduction. 免疫细胞类型和DNA甲基化随女性的生殖状态而变化:生殖成本的可能途径。
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-02-02 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac003
Calen P Ryan, Meaghan J Jones, Rachel D Edgar, Nanette R Lee, Michael S Kobor, Thomas W McDade, Christopher W Kuzawa

Background: Consistent with evolutionarily theorized costs of reproduction (CoR), reproductive history in women is associated with life expectancy and susceptibility to certain cancers, autoimmune disorders and metabolic disease. Immunological changes originating during reproduction may help explain some of these relationships.

Methodology: To explore the potential role of the immune system in female CoR, we characterized leukocyte composition and regulatory processes using DNA methylation (DNAm) in a cross-sectional cohort of young (20-22 years old) women differing in reproductive status.

Results: Compared to nulliparity, pregnancy was characterized by differential methylation at 828 sites, 96% of which were hypomethylated and enriched for genes associated with T-cell activation, innate immunity, pre-eclampsia and neoplasia. Breastfeeding was associated with differential methylation at 1107 sites (71% hypermethylated), enriched for genes involved in metabolism, immune self-recognition and neurogenesis. There were no significant differences in DNAm between nulliparous and parous women. However, compared to nullipara, pregnant women had lower proportions of B, CD4T, CD8T and natural killer (NK) cells, and higher proportions of granulocytes and monocytes. Monocyte counts were lower and NK counts higher among breastfeeding women, and remained so among parous women.

Implications: Our findings point to widespread differences in DNAm during pregnancy and lactation. These effects appear largely transient, but may accumulate with gravidity become detectable as women age. Nulliparous and parous women differed in leukocyte composition, consistent with more persistent effects of reproduction on cell type. These findings support transient (leukocyte DNAm) and persistent (cell composition) changes associated with reproduction in women, illuminating potential pathways contributing to CoR. Lay Summary: Evolutionary theory and epidemiology support costs of reproduction (CoR) to women's health that may involve changes in immune function. We report differences in immune cell composition and gene regulation during pregnancy and breastfeeding. While many of these differences appear transient, immune cell composition may remain, suggesting mechanisms for female CoR.

背景:与进化理论的生殖成本(CoR)一致,女性的生殖史与预期寿命和对某些癌症、自身免疫性疾病和代谢疾病的易感性有关。生殖过程中产生的免疫变化可能有助于解释这些关系。方法:为了探索免疫系统在女性CoR中的潜在作用,我们在一个不同生殖状态的年轻(20-22岁)女性的横断面队列中,使用DNA甲基化(DNAm)来表征白细胞组成和调节过程。结果:与无产相比,妊娠的特点是828个位点的甲基化差异,其中96%的位点低甲基化,富集与t细胞活化、先天免疫、先兆子痫和肿瘤相关的基因。母乳喂养与1107个位点的差异甲基化(71%高甲基化)有关,这些位点富含与代谢、免疫自我识别和神经发生有关的基因。未产妇女和已产妇女的dna无显著差异。然而,与未产妇相比,孕妇的B、CD4T、CD8T和自然杀伤细胞(NK)的比例较低,而粒细胞和单核细胞的比例较高。单核细胞计数较低,NK细胞计数较高的母乳喂养妇女,并保持如此,在产妇。启示:我们的研究结果指出了孕期和哺乳期dna的广泛差异。这些影响在很大程度上是短暂的,但随着女性年龄的增长,可能会随着重力的积累而变得明显。未生育妇女和已生育妇女的白细胞组成不同,这与生殖对细胞类型更持久的影响是一致的。这些发现支持与女性生殖相关的短暂(白细胞DNAm)和持续(细胞组成)变化,阐明了促成CoR的潜在途径。Lay总结:进化理论和流行病学支持生殖成本(CoR)对女性健康的影响可能涉及免疫功能的变化。我们报告在怀孕和哺乳期间免疫细胞组成和基因调控的差异。虽然许多这些差异似乎是短暂的,但免疫细胞组成可能仍然存在,这提示了女性CoR的机制。
{"title":"Immune cell type and DNA methylation vary with reproductive status in women: possible pathways for costs of reproduction.","authors":"Calen P Ryan,&nbsp;Meaghan J Jones,&nbsp;Rachel D Edgar,&nbsp;Nanette R Lee,&nbsp;Michael S Kobor,&nbsp;Thomas W McDade,&nbsp;Christopher W Kuzawa","doi":"10.1093/emph/eoac003","DOIUrl":"https://doi.org/10.1093/emph/eoac003","url":null,"abstract":"<p><strong>Background: </strong>Consistent with evolutionarily theorized costs of reproduction (CoR), reproductive history in women is associated with life expectancy and susceptibility to certain cancers, autoimmune disorders and metabolic disease. Immunological changes originating during reproduction may help explain some of these relationships.</p><p><strong>Methodology: </strong>To explore the potential role of the immune system in female CoR, we characterized leukocyte composition and regulatory processes using DNA methylation (DNAm) in a cross-sectional cohort of young (20-22 years old) women differing in reproductive status.</p><p><strong>Results: </strong>Compared to nulliparity, pregnancy was characterized by differential methylation at 828 sites, 96% of which were hypomethylated and enriched for genes associated with T-cell activation, innate immunity, pre-eclampsia and neoplasia. Breastfeeding was associated with differential methylation at 1107 sites (71% hypermethylated), enriched for genes involved in metabolism, immune self-recognition and neurogenesis. There were no significant differences in DNAm between nulliparous and parous women. However, compared to nullipara, pregnant women had lower proportions of B, CD4T, CD8T and natural killer (NK) cells, and higher proportions of granulocytes and monocytes. Monocyte counts were lower and NK counts higher among breastfeeding women, and remained so among parous women.</p><p><strong>Implications: </strong>Our findings point to widespread differences in DNAm during pregnancy and lactation. These effects appear largely transient, but may accumulate with gravidity become detectable as women age. Nulliparous and parous women differed in leukocyte composition, consistent with more persistent effects of reproduction on cell type. These findings support transient (leukocyte DNAm) and persistent (cell composition) changes associated with reproduction in women, illuminating potential pathways contributing to CoR. <b>Lay Summary:</b> Evolutionary theory and epidemiology support costs of reproduction (CoR) to women's health that may involve changes in immune function. We report differences in immune cell composition and gene regulation during pregnancy and breastfeeding. While many of these differences appear transient, immune cell composition may remain, suggesting mechanisms for female CoR.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":null,"pages":null},"PeriodicalIF":3.7,"publicationDate":"2022-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8841013/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39803213","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Optimal non-pharmaceutical intervention policy for Covid-19 epidemic via neuroevolution algorithm. 基于神经进化算法的Covid-19疫情最优非药物干预策略
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-01-28 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac002
Arash Saeidpour, Pejman Rohani

Background: National responses to the Covid-19 pandemic varied markedly across countries, from business-as-usual to complete shutdowns. Policies aimed at disrupting the viral transmission cycle and preventing the overwhelming of healthcare systems inevitably exact an economic toll.

Methodology: We developed an intervention policy model that comprised the relative human, implementation and healthcare costs of non-pharmaceutical epidemic interventions and identified the optimal strategy using a neuroevolution algorithm. The proposed model finds the minimum required reduction in transmission rates to maintain the burden on the healthcare system below the maximum capacity.

Results: We find that such a policy renders a sharp increase in the control strength during the early stages of the epidemic, followed by a steady increase in the subsequent ten weeks as the epidemic approaches its peak, and finally the control strength is gradually decreased as the population moves towards herd immunity. We have also shown how such a model can provide an efficient adaptive intervention policy at different stages of the epidemic without having access to the entire history of its progression in the population.

Conclusions and implications: This work emphasizes the importance of imposing intervention measures early and provides insights into adaptive intervention policies to minimize the economic impacts of the epidemic without putting an extra burden on the healthcare system.

Lay summary: We developed an intervention policy model that comprised the relative human, implementation and healthcare costs of non-pharmaceutical epidemic interventions and identified the optimal strategy using a neuroevolution algorithm. Our work emphasizes the importance of imposing intervention measures early and provides insights into adaptive intervention policies to minimize the economic impacts of the epidemic without putting an extra burden on the healthcare system.

背景:各国对Covid-19大流行的应对措施差异很大,从一切照旧到完全关闭。旨在破坏病毒传播周期和防止医疗系统不堪重负的政策不可避免地会造成经济损失。方法:我们开发了一个干预政策模型,该模型包括非药物流行病干预的相对人力成本、实施成本和医疗成本,并使用神经进化算法确定了最佳策略。所提出的模型找到了将医疗保健系统负担维持在最大容量以下所需的最低传播率降低。结果:我们发现,这种政策使控制强度在疫情初期急剧增加,随后在疫情接近高峰的10周内稳步增加,最后随着人群向群体免疫方向发展,控制强度逐渐降低。我们还展示了这种模型如何能够在疫情的不同阶段提供有效的适应性干预政策,而无需了解其在人口中发展的整个历史。结论和意义:这项工作强调了早期实施干预措施的重要性,并提供了适应性干预政策的见解,以尽量减少疫情的经济影响,同时不给医疗系统带来额外负担。摘要:我们开发了一个干预政策模型,该模型包含了非药物流行病干预的相对人力、实施和医疗成本,并使用神经进化算法确定了最佳策略。我们的工作强调了早期实施干预措施的重要性,并提供了适应性干预政策的见解,以尽量减少疫情的经济影响,同时不给医疗系统带来额外负担。
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引用次数: 1
An orally administered drug prevents selection for antibiotic-resistant bacteria in the gut during daptomycin therapy. 口服药物可防止在达托霉素治疗期间肠道中抗生素耐药细菌的选择。
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-01-01 DOI: 10.1093/emph/eoac035
Valerie J Morley, Derek G Sim, Aline Penkevich, Robert J Woods, Andrew F Read

Background and objectives: Previously, we showed proof-of-concept in a mouse model that oral administration of cholestyramine prevented enrichment of daptomycin-resistant Enterococcus faecium in the gastrointestinal (GI) tract during daptomycin therapy. Cholestyramine binds daptomycin in the gut, which removes daptomycin selection pressure and so prevents the enrichment of resistant clones. Here, we investigated two open questions related to this approach: (i) can cholestyramine prevent the enrichment of diverse daptomycin mutations emerging de novo in the gut? and (ii) how does the timing of cholestyramine administration impact its ability to suppress resistance?

Methodology: Mice with GI E. faecium were treated with daptomycin with or without cholestyramine, and E. faecium was cultured from feces to measure changes in daptomycin susceptibility. A subset of clones was sequenced to investigate the genomic basis of daptomycin resistance.

Results: Cholestyramine prevented the enrichment of diverse resistance mutations that emerged de novo in daptomycin-treated mice. Whole-genome sequencing revealed that resistance emerged through multiple genetic pathways, with most candidate resistance mutations observed in the clsA gene. In addition, we observed that cholestyramine was most effective when administration started prior to the first dose of daptomycin. However, beginning cholestyramine after the first daptomycin dose reduced the frequency of resistant E. faecium compared to not using cholestyramine at all.

Conclusions and implications: Cholestyramine prevented the enrichment of diverse daptomycin-resistance mutations in intestinal E. faecium populations during daptomycin treatment, and it is a promising tool for managing the transmission of daptomycin-resistant E. faecium.

背景和目的:之前,我们在小鼠模型中证明了概念证明,口服胆胺可以在达托霉素治疗期间阻止胃肠道(GI)中耐达托霉素屎肠球菌的富集。胆胺在肠道中与达托霉素结合,消除了达托霉素的选择压力,从而防止了耐药克隆的富集。在这里,我们研究了与该方法相关的两个开放问题:(i)胆胺能否阻止肠道中重新出现的各种达托霉素突变的富集?(ii)给药的时机如何影响其抑制耐药性的能力?方法:用加或不加胆胺的达托霉素处理胃肠道粪肠杆菌小鼠,从粪便中培养粪肠杆菌,测定其对达托霉素的敏感性变化。对一部分克隆进行测序以研究达托霉素耐药的基因组基础。结果:胆碱胺阻止了达托霉素处理小鼠中重新出现的多种耐药突变的富集。全基因组测序显示,耐药通过多种遗传途径出现,在clsA基因中观察到大多数候选耐药突变。此外,我们观察到在第一次给药达托霉素之前开始给药时胆胺最有效。然而,与完全不使用胆胺相比,在第一次服用达托霉素后开始使用胆胺可减少耐药粪肠杆菌的频率。结论和意义:在达托霉素治疗期间,胆碱胺可阻止肠道粪肠杆菌中多种达托霉素耐药突变的富集,胆碱胺是一种很有前途的控制达托霉素耐药粪肠杆菌传播的工具。
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引用次数: 0
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Evolution, Medicine, and Public Health
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