首页 > 最新文献

Evolution, Medicine, and Public Health最新文献

英文 中文
Early life adversity, reproductive history and breast cancer risk. 早期生活逆境、生育史和乳腺癌风险。
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-08-23 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac034
Amy M Boddy, Shawn Rupp, Zhe Yu, Heidi Hanson, Athena Aktipis, Ken Smith

Background and objectives: Individuals who experience early life adversity are at an increased risk for chronic disease later in life. Less is known about how early life factors are associated with cancer susceptibility. Here, we use a life history framework to test whether early life adversity increases the risk of breast cancer. We predict that early life adversity can shift investment in somatic maintenance and accelerate the timing of reproduction, which may mediate or interact with the risk of breast cancer.

Methodology: We use population-wide data from the Utah Population Database (UPDB) and Utah Cancer Registry, leading to 24 957 cases of women diagnosed with breast cancer spanning 20 years (1990-2010) and 124 785 age-matched controls. We generated a cumulative early life adversity summation score to evaluate the interaction (moderation) and mediation between early life adversity, reproductive history and their association with breast cancer risk.

Results: Our analyses led to three key findings: (i) more early life adversity, when considered as a main effect, accelerates the time to first birth and death, (ii) early age at first birth and high parity decreases the risk of breast cancer and (iii) we find no association between early adversity and breast cancer risk either as a main effect or in its interaction with reproductive history.

Conclusion and implications: Early adversity elevates the risk of overall mortality through mechanisms other than breast cancer risk. This suggests early life factors can generate different effects on health. Future work should incorporate more complex view of life history patterns, including multiple life stages, when making predictions about cancer susceptibility.

背景和目的:早期经历逆境的个体在以后的生活中患慢性病的风险增加。人们对早期生活因素与癌症易感性之间的关系知之甚少。在这里,我们使用生活史框架来测试早期生活中的逆境是否会增加患乳腺癌的风险。我们预测,早期生活中的逆境可以改变身体维持的投资,加速生殖的时间,这可能介导或与乳腺癌的风险相互作用。方法:我们使用来自犹他州人口数据库(UPDB)和犹他州癌症登记处的全人群数据,包括20年间(1990-2010)诊断为乳腺癌的24957例女性和127485例年龄匹配的对照组。我们制作了一个累积的早期生活逆境综合评分,以评估早期生活逆境、生殖史及其与乳腺癌风险之间的相互作用(调节)和中介作用。结果:我们的分析得出了三个关键发现:(i)更多的早期生活逆境,当被认为是主要影响时,加速了第一次出生和死亡的时间,(ii)第一次出生年龄早和胎次高降低了患乳腺癌的风险,(iii)我们发现早期逆境和乳腺癌风险之间没有关联,无论是作为主要影响还是与生殖史的相互作用。结论和启示:早期逆境提高总体死亡率的机制并非乳腺癌风险。这表明早期生活因素会对健康产生不同的影响。在预测癌症易感性时,未来的工作应该纳入更复杂的生活史模式,包括多个生命阶段。
{"title":"Early life adversity, reproductive history and breast cancer risk.","authors":"Amy M Boddy, Shawn Rupp, Zhe Yu, Heidi Hanson, Athena Aktipis, Ken Smith","doi":"10.1093/emph/eoac034","DOIUrl":"10.1093/emph/eoac034","url":null,"abstract":"<p><strong>Background and objectives: </strong>Individuals who experience early life adversity are at an increased risk for chronic disease later in life. Less is known about how early life factors are associated with cancer susceptibility. Here, we use a life history framework to test whether early life adversity increases the risk of breast cancer. We predict that early life adversity can shift investment in somatic maintenance and accelerate the timing of reproduction, which may mediate or interact with the risk of breast cancer.</p><p><strong>Methodology: </strong>We use population-wide data from the Utah Population Database (UPDB) and Utah Cancer Registry, leading to 24 957 cases of women diagnosed with breast cancer spanning 20 years (1990-2010) and 124 785 age-matched controls. We generated a cumulative early life adversity summation score to evaluate the interaction (moderation) and mediation between early life adversity, reproductive history and their association with breast cancer risk.</p><p><strong>Results: </strong>Our analyses led to three key findings: (i) more early life adversity, when considered as a main effect, accelerates the time to first birth and death, (ii) early age at first birth and high parity decreases the risk of breast cancer and (iii) we find no association between early adversity and breast cancer risk either as a main effect or in its interaction with reproductive history.</p><p><strong>Conclusion and implications: </strong>Early adversity elevates the risk of overall mortality through mechanisms other than breast cancer risk. This suggests early life factors can generate different effects on health. Future work should incorporate more complex view of life history patterns, including multiple life stages, when making predictions about cancer susceptibility.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":null,"pages":null},"PeriodicalIF":3.7,"publicationDate":"2022-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9464099/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9953211","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Socioeconomic impacts on Andean adolescents' growth: Variation between households, between communities and over time. 安第斯地区青少年成长的社会经济影响:家庭、社区和时间的差异
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-08-22 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac033
Mecca E Burris, Esperanza Caceres, Emily M Chester, Kathryn A Hicks, Thomas W McDade, Lynn Sikkink, Hilde Spielvogel, Jonathan Thornburg, Virginia J Vitzthum

Background/objectives: We evaluated potential socioeconomic contributors to variation in Andean adolescents' growth between households within a peri-urban community undergoing rapid demographic and economic change, between different community types (rural, peri-urban, urban) and over time. Because growth monitoring is widely used for assessing community needs and progress, we compared the prevalences of stunting, underweight, and overweight estimated by three different growth references.

Methods: Anthropometrics of 101 El Alto, Bolivia, adolescents (Alteños), 11.0-14.9 years old in 2003, were compared between households (economic status assessed by parental occupations); to one urban and two rural samples collected in 1983/1998/1977, respectively; and to the WHO growth reference, a representative sample of Bolivian children (MESA), and a region-wide sample of high-altitude Peruvian children (Puno).

Results: Female Alteños' growth was positively associated with household and maternal income indices. Alteños' height averaged ∼0.8SD/∼0.6SD/∼2SDs greater than adolescents' height in urban and rural communities measured in 1983/1998/1977, respectively. Overweight prevalence was comparable to the WHO, and lower than MESA and Puno, references. Stunting was 8.5/2.5/0.5 times WHO/MESA/Puno samples, respectively.

Conclusions/implications: Both peri-urban conditions and temporal trends contributed to gains in Alteños' growth. Rural out-migration can alleviate migrants' poverty, partly because of more diverse economic options in urbanized communities, especially for women. Nonetheless, Alteños averaged below WHO and MESA height and weight medians. Evolved biological adaptations to environmental challenges, and the consequent variability in growth trajectories, favor using multiple growth references. Growth monitoring should be informed by community- and household-level studies to detect and understand local factors causing or alleviating health disparities.

背景/目的:我们评估了安第斯地区青少年成长在经历快速人口和经济变化的城郊社区家庭之间、不同社区类型(农村、城郊、城市)之间以及随时间变化的潜在社会经济因素。由于生长监测被广泛用于评估社区需求和进展,我们比较了三种不同生长参考资料估计的发育迟缓、体重不足和超重的患病率。方法:对2003年玻利维亚El Alto市11.0 ~ 14.9岁的101名青少年(Alteños)的家庭间(以父母职业评估经济状况)的人体测量数据进行比较;分别于1983/1998/1977年收集的一个城市和两个农村样本;根据世卫组织的生长参考,玻利维亚儿童的代表性样本(MESA)和秘鲁高海拔地区儿童的全区域样本(Puno)。结果:女性Alteños成长与家庭及母亲收入指数呈正相关。Alteños的平均身高分别比1983/1998/1977年城市和农村社区青少年的身高高~ 0.8SD/ ~ 0.6SD/ ~ 2sd。超重患病率与WHO相当,低于MESA和Puno,参考文献。发育不良是WHO/MESA/Puno样本的8.5/2.5/0.5倍。结论/影响:城市周边条件和时间趋势都促进了Alteños的增长。农村外迁可以减轻移徙者的贫困,部分原因是城市化社区的经济选择更加多样化,特别是对妇女而言。尽管如此,Alteños平均低于WHO和MESA的身高和体重中位数。进化的生物适应环境的挑战,以及随之而来的生长轨迹的可变性,有利于使用多个生长参考。生长监测应以社区和家庭一级的研究为依据,以发现和了解造成或减轻健康差异的当地因素。
{"title":"Socioeconomic impacts on Andean adolescents' growth: Variation between households, between communities and over time.","authors":"Mecca E Burris,&nbsp;Esperanza Caceres,&nbsp;Emily M Chester,&nbsp;Kathryn A Hicks,&nbsp;Thomas W McDade,&nbsp;Lynn Sikkink,&nbsp;Hilde Spielvogel,&nbsp;Jonathan Thornburg,&nbsp;Virginia J Vitzthum","doi":"10.1093/emph/eoac033","DOIUrl":"https://doi.org/10.1093/emph/eoac033","url":null,"abstract":"<p><strong>Background/objectives: </strong>We evaluated potential socioeconomic contributors to variation in Andean adolescents' growth between households within a peri-urban community undergoing rapid demographic and economic change, between different community types (rural, peri-urban, urban) and over time. Because growth monitoring is widely used for assessing community needs and progress, we compared the prevalences of stunting, underweight, and overweight estimated by three different growth references.</p><p><strong>Methods: </strong>Anthropometrics of 101 El Alto, Bolivia, adolescents (Alteños), 11.0-14.9 years old in 2003, were compared between households (economic status assessed by parental occupations); to one urban and two rural samples collected in 1983/1998/1977, respectively; and to the WHO growth reference, a representative sample of Bolivian children (MESA), and a region-wide sample of high-altitude Peruvian children (Puno).</p><p><strong>Results: </strong>Female Alteños' growth was positively associated with household and maternal income indices. Alteños' height averaged ∼0.8SD/∼0.6SD/∼2SDs greater than adolescents' height in urban and rural communities measured in 1983/1998/1977, respectively. Overweight prevalence was comparable to the WHO, and lower than MESA and Puno, references. Stunting was 8.5/2.5/0.5 times WHO/MESA/Puno samples, respectively.</p><p><strong>Conclusions/implications: </strong>Both peri-urban conditions and temporal trends contributed to gains in Alteños' growth. Rural out-migration can alleviate migrants' poverty, partly because of more diverse economic options in urbanized communities, especially for women. Nonetheless, Alteños averaged below WHO and MESA height and weight medians. Evolved biological adaptations to environmental challenges, and the consequent variability in growth trajectories, favor using multiple growth references. Growth monitoring should be informed by community- and household-level studies to detect and understand local factors causing or alleviating health disparities.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":null,"pages":null},"PeriodicalIF":3.7,"publicationDate":"2022-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9454678/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33460122","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Selfish evolution of placental hormones. 胎盘激素的自私进化。
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-08-19 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac031
Grace Keegan, Manus M Patten

We hypothesize that some placental hormones-specifically those that arise by tandem duplication of genes for maternal hormones-may behave as gestational drivers, selfish genetic elements that encourage the spontaneous abortion of offspring that fail to inherit them. Such drivers are quite simple to evolve, requiring just three things: a decrease in expression or activity of some essential maternal hormone during pregnancy; a compensatory increase in expression or activity of the homologous hormone by the placenta; and genetic linkage between the two effects. Gestational drive may therefore be a common selection pressure experienced by any of the various hormones of mammalian pregnancy that have arisen by tandem gene duplication. We examine the evolution of chorionic gonadotropin in the human lineage in light of this hypothesis. Finally, we postulate that some of the difficulties of human pregnancy may be a consequence of the action of selfish genes.

我们假设一些胎盘激素——特别是那些由母体激素基因串联复制产生的激素——可能作为妊娠驱动因素,自私的遗传因素鼓励未能继承它们的后代自然流产。这些驱动因素很容易进化,只需要三件事:在怀孕期间,一些必需的母体激素的表达或活动减少;胎盘补偿性增加同种激素的表达或活性;以及这两种效应之间的基因联系。因此,妊娠驱动可能是由串联基因复制产生的哺乳动物妊娠中任何一种激素所经历的共同选择压力。根据这一假设,我们研究了绒毛膜促性腺激素在人类谱系中的进化。最后,我们假设人类怀孕的一些困难可能是自私基因作用的结果。
{"title":"Selfish evolution of placental hormones.","authors":"Grace Keegan,&nbsp;Manus M Patten","doi":"10.1093/emph/eoac031","DOIUrl":"https://doi.org/10.1093/emph/eoac031","url":null,"abstract":"<p><p>We hypothesize that some placental hormones-specifically those that arise by tandem duplication of genes for maternal hormones-may behave as gestational drivers, selfish genetic elements that encourage the spontaneous abortion of offspring that fail to inherit them. Such drivers are quite simple to evolve, requiring just three things: a decrease in expression or activity of some essential maternal hormone during pregnancy; a compensatory increase in expression or activity of the homologous hormone by the placenta; and genetic linkage between the two effects. Gestational drive may therefore be a common selection pressure experienced by any of the various hormones of mammalian pregnancy that have arisen by tandem gene duplication. We examine the evolution of chorionic gonadotropin in the human lineage in light of this hypothesis. Finally, we postulate that some of the difficulties of human pregnancy may be a consequence of the action of selfish genes.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":null,"pages":null},"PeriodicalIF":3.7,"publicationDate":"2022-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9426663/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40341508","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Commentary-fat but fit…and cold? Potential evolutionary and environmental drivers of metabolically healthy obesity. 评论-肥胖但健康......而且冷酷?代谢健康型肥胖的潜在进化和环境驱动因素。
IF 3.3 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2022-08-16 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac030
Cara Ocobock, Alexandra Niclou

As global obesity rates continue to rise, it is important to understand the origin, role and range of human variation of body mass index (BMI) in assessing health and healthcare. A growing body of evidence suggests that BMI is a poor indicator of health across populations, and that there may be a metabolically healthy obese phenotype. Here, we review the reasons why BMI is an inadequate tool for assessing cardiometabolic health. We then suggest that cold climate adaptations may also render BMI an uninformative metric. Underlying evolutionary and environmental drivers may allow for heat conserving larger body sizes without necessarily increasing metabolic health risks. However, there may also be a potential mismatch between modern obesogenic environments and adaptations to cold climates, highlighting the need to further investigate the potential for metabolically healthy obese phenotypes among circumpolar and other populations as well as the broader meaning for metabolic health.

随着全球肥胖率的持续上升,了解体重指数(BMI)在评估健康和医疗保健方面的起源、作用和人体变化范围非常重要。越来越多的证据表明,体重指数并不能很好地反映不同人群的健康状况,而且可能存在代谢健康的肥胖表型。在此,我们回顾了 BMI 不足以评估心脏代谢健康的原因。然后,我们认为寒冷气候的适应性也可能使 BMI 成为一种缺乏信息的指标。潜在的进化和环境驱动因素可能会使人的体型变大,从而节省热量,但不一定会增加代谢健康风险。然而,现代肥胖环境与寒冷气候适应性之间也可能存在潜在的不匹配,这凸显了进一步研究环北极和其他人群代谢健康肥胖表型的可能性以及代谢健康的广泛意义的必要性。
{"title":"Commentary-fat but fit…and cold? Potential evolutionary and environmental drivers of metabolically healthy obesity.","authors":"Cara Ocobock, Alexandra Niclou","doi":"10.1093/emph/eoac030","DOIUrl":"10.1093/emph/eoac030","url":null,"abstract":"<p><p>As global obesity rates continue to rise, it is important to understand the origin, role and range of human variation of body mass index (BMI) in assessing health and healthcare. A growing body of evidence suggests that BMI is a poor indicator of health across populations, and that there may be a metabolically healthy obese phenotype. Here, we review the reasons why BMI is an inadequate tool for assessing cardiometabolic health. We then suggest that cold climate adaptations may also render BMI an uninformative metric. Underlying evolutionary and environmental drivers may allow for heat conserving larger body sizes without necessarily increasing metabolic health risks. However, there may also be a potential mismatch between modern obesogenic environments and adaptations to cold climates, highlighting the need to further investigate the potential for metabolically healthy obese phenotypes among circumpolar and other populations as well as the broader meaning for metabolic health.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2022-08-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9447378/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33450151","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Heritage-specific oral microbiota in Indigenous Australian dental calculus. 澳大利亚土着牙石中遗传特异性口腔微生物群。
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-08-05 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac024
Matilda Handsley-Davis, Kostas Kapellas, Lisa M Jamieson, Joanne Hedges, Emily Skelly, John Kaidonis, Poppy Anastassiadis, Laura S Weyrich

Background and objectives: Aboriginal Australians and Torres Strait Islanders (hereafter respectfully referred to as Indigenous Australians) experience a high burden of chronic non-communicable diseases (NCDs). Increased NCD risk is linked to oral diseases mediated by the oral microbiota, a microbial community influenced by both vertical transmission and lifestyle factors. As an initial step towards understanding the oral microbiota as a factor in Indigenous health, we present the first investigation of oral microbiota in Indigenous Australian adults.

Methodology: Dental calculus samples from Indigenous Australians with periodontal disease (PD; n = 13) and non-Indigenous individuals both with (n = 19) and without PD (n = 20) were characterized using 16S ribosomal RNA gene amplicon sequencing. Alpha and beta diversity, differentially abundant microbial taxa and taxa unique to different participant groups were analysed using QIIME2.

Results: Samples from Indigenous Australians were more phylogenetically diverse (Kruskal-Wallis H = 19.86, P = 8.3 × 10-6), differed significantly in composition from non-Indigenous samples (PERMANOVA pseudo-F = 10.42, P = 0.001) and contained a relatively high proportion of unique taxa not previously reported in the human oral microbiota (e.g. Endomicrobia). These patterns were robust to stratification by PD status. Oral microbiota diversity and composition also differed between Indigenous individuals living in different geographic regions.

Conclusions and implications: Indigenous Australians may harbour unique oral microbiota shaped by their long relationships with Country (ancestral homelands). Our findings have implications for understanding the origins of oral and systemic NCDs and for the inclusion of Indigenous peoples in microbiota research, highlighting the microbiota as a novel field of enquiry to improve Indigenous health.

背景和目标:澳大利亚土著居民和托雷斯海峡岛民(以下尊称为澳大利亚土著)承受着慢性非传染性疾病的沉重负担。非传染性疾病风险增加与口腔微生物群介导的口腔疾病有关,口腔微生物群受垂直传播和生活方式因素的影响。作为了解口腔微生物群作为土著健康因素的第一步,我们提出了澳大利亚土著成年人口腔微生物群的首次调查。方法:牙石样本来自澳大利亚土著牙周病(PD;采用16S核糖体RNA基因扩增子测序对13例PD患者和20例PD患者进行了特征分析。利用QIIME2分析了α和β多样性、差异丰富的微生物类群和不同参与组特有的类群。结果:来自澳大利亚土著的样本具有更大的系统发育多样性(Kruskal-Wallis H = 19.86, P = 8.3 × 10-6),在组成上与非土著样本有显著差异(PERMANOVA伪f = 10.42, P = 0.001),并且含有相对较高比例的以前未在人类口腔微生物群中报道的独特分类群(例如Endomicrobia)。这些模式对于PD状态的分层是稳健的。生活在不同地理区域的土著人的口腔微生物群多样性和组成也存在差异。结论和意义:澳大利亚土著居民可能拥有独特的口腔微生物群,这是由于他们与国家(祖先家园)的长期关系形成的。我们的研究结果对理解口服和系统性非传染性疾病的起源以及将土著人民纳入微生物群研究具有重要意义,突出了微生物群作为改善土著健康的新研究领域。
{"title":"Heritage-specific oral microbiota in Indigenous Australian dental calculus.","authors":"Matilda Handsley-Davis,&nbsp;Kostas Kapellas,&nbsp;Lisa M Jamieson,&nbsp;Joanne Hedges,&nbsp;Emily Skelly,&nbsp;John Kaidonis,&nbsp;Poppy Anastassiadis,&nbsp;Laura S Weyrich","doi":"10.1093/emph/eoac024","DOIUrl":"https://doi.org/10.1093/emph/eoac024","url":null,"abstract":"<p><strong>Background and objectives: </strong>Aboriginal Australians and Torres Strait Islanders (hereafter respectfully referred to as Indigenous Australians) experience a high burden of chronic non-communicable diseases (NCDs). Increased NCD risk is linked to oral diseases mediated by the oral microbiota, a microbial community influenced by both vertical transmission and lifestyle factors. As an initial step towards understanding the oral microbiota as a factor in Indigenous health, we present the first investigation of oral microbiota in Indigenous Australian adults.</p><p><strong>Methodology: </strong>Dental calculus samples from Indigenous Australians with periodontal disease (PD; <i>n</i> = 13) and non-Indigenous individuals both with (<i>n</i> = 19) and without PD (<i>n</i> = 20) were characterized using 16S ribosomal RNA gene amplicon sequencing. Alpha and beta diversity, differentially abundant microbial taxa and taxa unique to different participant groups were analysed using QIIME2.</p><p><strong>Results: </strong>Samples from Indigenous Australians were more phylogenetically diverse (Kruskal-Wallis <i>H</i> = 19.86, <i>P</i> = 8.3 × 10<sup>-6</sup>), differed significantly in composition from non-Indigenous samples (PERMANOVA pseudo-<i>F</i> = 10.42, <i>P</i> = 0.001) and contained a relatively high proportion of unique taxa not previously reported in the human oral microbiota (e.g. Endomicrobia). These patterns were robust to stratification by PD status. Oral microbiota diversity and composition also differed between Indigenous individuals living in different geographic regions.</p><p><strong>Conclusions and implications: </strong>Indigenous Australians may harbour unique oral microbiota shaped by their long relationships with Country (ancestral homelands). Our findings have implications for understanding the origins of oral and systemic NCDs and for the inclusion of Indigenous peoples in microbiota research, highlighting the microbiota as a novel field of enquiry to improve Indigenous health.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":null,"pages":null},"PeriodicalIF":3.7,"publicationDate":"2022-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9400808/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33442130","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Girls start life on an uneven playing field: Evidence from lowland rural Nepal. 女孩在不公平的环境中开始生活:来自尼泊尔低地农村的证据。
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-08-04 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac029
Akanksha A Marphatia, Naomi S Saville, Dharma S Manandhar, Mario Cortina-Borja, Alice M Reid, Jonathan C K Wells

Background and objectives: Evolutionary research on the sex ratio at birth (SRB) has focused on explaining variability within and between populations, and whether parental fitness is maximized by producing daughters or sons. We tested predictors of SRB in a low-income setting, to understand whether girls differ from boys in their likelihood of being born into families with the capacity to invest in them, which has implications for their future health and fitness.

Methodology: We used data from a cluster randomized control trial from lowland rural Nepal (16 115 mother-child dyads). We applied principal component analysis to extract two composite indices reflecting maternal socio-economic and reproductive (parity, age) capital. We fitted mixed-effects logistic regression models to estimate odds ratios of having a girl in association with these individual factors and indices.

Results: The SRB was 112. Compared to the global reference SRB (105), there were seven missing girls per 100 boys. Uneducated, early-marrying, poorer and shorter mothers were more likely to give birth to girls. Analysing composite maternal indices, lower socio-economic and reproductive capital were independently associated with a greater likelihood of having a girl.

Conclusions and implications: In this population, girls start life facing composite disadvantages, being more likely than boys to be born to mothers with lower socio-economic status and reproductive capital. Both physiological and behavioural mechanisms may contribute to these epidemiological associations. Differential early exposure by sex to maternal factors may underpin intergenerational cycles of gender inequality, mediated by developmental trajectory, education and socio-economic status.

背景和目的:关于出生性别比(SRB)的进化研究主要集中在解释种群内部和种群之间的变异,以及是否通过生女儿或儿子来最大化父母的适应性。我们在低收入环境中测试了SRB的预测因子,以了解女孩与男孩在出生在有能力投资他们的家庭的可能性方面是否不同,这对他们未来的健康和健身有影响。方法:我们使用的数据来自尼泊尔低地农村的一项聚类随机对照试验(16115对母子)。我们应用主成分分析提取了反映产妇社会经济和生殖(胎次、年龄)资本的两个复合指数。我们拟合了混合效应逻辑回归模型来估计与这些个体因素和指数相关的生女孩的比值比。结果:SRB为112。与全球参考性别比(105)相比,每100名男孩中有7名女孩失踪。未受过教育、早婚、较贫穷和较矮的母亲更有可能生女孩。分析综合产妇指数,较低的社会经济资本和生殖资本与生女孩的可能性较大独立相关。结论和影响:在这一人群中,女孩一出生就面临综合劣势,比男孩更有可能由社会经济地位和生殖资本较低的母亲所生。生理和行为机制都可能促成这些流行病学关联。性别对母亲因素的不同早期暴露可能会加剧由发育轨迹、教育和社会经济地位介导的性别不平等代际循环。
{"title":"Girls start life on an uneven playing field: Evidence from lowland rural Nepal.","authors":"Akanksha A Marphatia,&nbsp;Naomi S Saville,&nbsp;Dharma S Manandhar,&nbsp;Mario Cortina-Borja,&nbsp;Alice M Reid,&nbsp;Jonathan C K Wells","doi":"10.1093/emph/eoac029","DOIUrl":"https://doi.org/10.1093/emph/eoac029","url":null,"abstract":"<p><strong>Background and objectives: </strong>Evolutionary research on the sex ratio at birth (SRB) has focused on explaining variability within and between populations, and whether parental fitness is maximized by producing daughters or sons. We tested predictors of SRB in a low-income setting, to understand whether girls differ from boys in their likelihood of being born into families with the capacity to invest in them, which has implications for their future health and fitness.</p><p><strong>Methodology: </strong>We used data from a cluster randomized control trial from lowland rural Nepal (16 115 mother-child dyads). We applied principal component analysis to extract two composite indices reflecting maternal socio-economic and reproductive (parity, age) capital. We fitted mixed-effects logistic regression models to estimate odds ratios of having a girl in association with these individual factors and indices.</p><p><strong>Results: </strong>The SRB was 112. Compared to the global reference SRB (105), there were seven missing girls per 100 boys. Uneducated, early-marrying, poorer and shorter mothers were more likely to give birth to girls. Analysing composite maternal indices, lower socio-economic and reproductive capital were independently associated with a greater likelihood of having a girl.</p><p><strong>Conclusions and implications: </strong>In this population, girls start life facing composite disadvantages, being more likely than boys to be born to mothers with lower socio-economic status and reproductive capital. Both physiological and behavioural mechanisms may contribute to these epidemiological associations. Differential early exposure by sex to maternal factors may underpin intergenerational cycles of gender inequality, mediated by developmental trajectory, education and socio-economic status.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":null,"pages":null},"PeriodicalIF":3.7,"publicationDate":"2022-08-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9384836/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40628666","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Can vaccines control bacterial virulence and pathogenicity? Bordetella pertussis: the advantage of fitness over virulence. 疫苗能控制细菌的毒力和致病性吗?百日咳博德特氏菌:体能优势大于毒力优势。
IF 3.3 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2022-08-03 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac028
Nicole Guiso, Benoit Soubeyrand, Denis Macina

Some vaccines, such as diphtheria toxoid and acellular pertussis vaccines (aPVs), may favor the emergence of less pathogenic strains of the respective bacteria they target. This review discusses the impact of the wide use of aPV on Bordetella pertussis phenotype evolutions and their beneficial consequences in the light of the diphtheria toxoid immunization program experience and structuring evidence review in a causal analysis following Bradford Hill's causality criteria. All aPVs contain the pertussis toxin (PT), the main virulence factor of B.pertussis, alone or with one adhesin (filamentous hemagglutinin (FHA)), two adhesins (FHA and pertactin (PRN)) or four adhesins (FHA, PRN and two fimbriae (Fim 2/3)). In countries where the coverage of aPVs containing PRN is high, PRN negative B.pertussis isolates are increasing in prevalence, but isolates nonproducing the other antigens are rarely reported. We hypothesize that the selective pressure at play with PRN should exist against all aVP antigens, although detection biases may hinder its detection for other antigens, especially PT. PT being responsible for clinically frank cases of the disease, the opportunity to collect PT negative isolates is far lower than to collect PRN negative isolates which have a limited clinical impact. The replacement of the current B.pertussis by far less pathogenic isolates no longer producing the factors contained in aPVs should be expected as a consequence of the wide aPV use.

一些疫苗,如白喉类毒素疫苗和无细胞百日咳疫苗(aPVs),可能有利于其所针对的细菌出现致病性较低的菌株。本综述根据白喉类毒素免疫计划的经验,并按照 Bradford Hill 的因果关系标准进行因果分析,讨论了广泛使用无细胞百日咳疫苗对百日咳博德特氏菌表型演变的影响及其有益后果。所有 aPV 都含有百日咳毒素(PT),这是百日咳杆菌的主要致病因子,可单独或与一种粘附素(丝状血凝素(FHA))、两种粘附素(FHA 和 pertactin(PRN))或四种粘附素(FHA、PRN 和两种缘膜(Fim 2/3))一起使用。在含有 PRN 的 aPV 覆盖率较高的国家,PRN 阴性的百日咳病毒分离株的流行率越来越高,但不产生其他抗原的分离株却鲜有报道。我们推测,PRN 对所有 aVP 抗原都有选择性压力,但检测偏差可能会阻碍对其他抗原(尤其是 PT)的检测。PT 是临床上常见的病例,因此收集 PT 阴性分离物的机会远远低于收集 PRN 阴性分离物的机会,因为 PRN 对临床的影响有限。由于广泛使用 aPV,预计目前的百日咳杆菌会被致病性低得多的分离株所取代,这些分离株不再产生 aPV 所含的因子。
{"title":"Can vaccines control bacterial virulence and pathogenicity? <i>Bordetella pertussis</i>: the advantage of fitness over virulence.","authors":"Nicole Guiso, Benoit Soubeyrand, Denis Macina","doi":"10.1093/emph/eoac028","DOIUrl":"10.1093/emph/eoac028","url":null,"abstract":"<p><p>Some vaccines, such as diphtheria toxoid and acellular pertussis vaccines (aPVs), may favor the emergence of less pathogenic strains of the respective bacteria they target. This review discusses the impact of the wide use of aPV on <i>Bordetella pertussis</i> phenotype evolutions and their beneficial consequences in the light of the diphtheria toxoid immunization program experience and structuring evidence review in a causal analysis following Bradford Hill's causality criteria. All aPVs contain the pertussis toxin (PT), the main virulence factor of <i>B.pertussis</i>, alone or with one adhesin (filamentous hemagglutinin (FHA)), two adhesins (FHA and pertactin (PRN)) or four adhesins (FHA, PRN and two fimbriae (Fim 2/3)). In countries where the coverage of aPVs containing PRN is high, PRN negative <i>B.pertussis</i> isolates are increasing in prevalence, but isolates nonproducing the other antigens are rarely reported. We hypothesize that the selective pressure at play with PRN should exist against all aVP antigens, although detection biases may hinder its detection for other antigens, especially PT. PT being responsible for clinically frank cases of the disease, the opportunity to collect PT negative isolates is far lower than to collect PRN negative isolates which have a limited clinical impact. The replacement of the current <i>B.pertussis</i> by far less pathogenic isolates no longer producing the factors contained in aPVs should be expected as a consequence of the wide aPV use.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2022-08-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9400806/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33442129","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Child dietary patterns in Homo sapiens evolution: A systematic review. 智人进化过程中的儿童饮食模式:系统综述。
IF 3.3 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2022-07-26 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac027
Lora L Iannotti, Emmanuel A Gyimah, Miranda Reid, Melissa Chapnick, Mary Kate Cartmill, Chessa K Lutter, Charles Hilton, Theresa E Gildner, Elizabeth A Quinn

Dietary patterns spanning millennia could inform contemporary public health nutrition. Children are largely absent from evidence describing diets throughout human evolution, despite prevalent malnutrition today signaling a potential genome-environment divergence. This systematic review aimed to identify dietary patterns of children ages 6 months to 10 years consumed before the widespread adoption of agriculture. Metrics of mention frequency (counts of food types reported) and food groups (globally standardized categories) were applied to: compare diets across subsistence modes [gatherer-hunter-fisher (GHF), early agriculture (EA) groups]; examine diet quality and diversity; and characterize differences by life course phase and environmental context defined using Köppen-Geiger climate zones. The review yielded child diet information from 95 cultural groups (52 from GHF; 43 from EA/mixed subsistence groups). Animal foods (terrestrial and aquatic) were the most frequently mentioned food groups in dietary patterns across subsistence modes, though at higher frequencies in GHF than in EA. A broad range of fruits, vegetables, roots and tubers were more common in GHF, while children from EA groups consumed more cereals than GHF, associated with poor health consequences as reported in some studies. Forty-eight studies compared diets across life course phases: 28 showed differences and 20 demonstrated similarities in child versus adult diets. Climate zone was a driver of food patterns provisioned from local ecosystems. Evidence from Homo sapiens evolution points to the need for nutrient-dense foods with high quality proteins and greater variety within and across food groups. Public health solutions could integrate these findings into food-based dietary guidelines for children.

跨越千年的饮食模式可以为当代公共健康营养提供参考。在描述人类进化过程中的膳食模式的证据中,基本上没有儿童的膳食模式,尽管如今营养不良现象普遍存在,这表明基因组与环境之间可能存在差异。本系统综述旨在确定农业广泛应用之前 6 个月至 10 岁儿童的饮食模式。采用提及频率(报告的食物种类计数)和食物类别(全球标准化类别)的指标来:比较不同生计模式[采集-狩猎-渔猎(GHF)、早期农业(EA)组]的饮食;检查饮食质量和多样性;以及根据生命过程阶段和使用柯本-盖革(Köppen-Geiger)气候带定义的环境背景来描述差异。此次研究获得了 95 个文化群体(52 个来自 GHF;43 个来自 EA/混合生计群体)的儿童饮食信息。动物性食物(陆生和水生)是各种生存方式的膳食模式中最常提及的食物类别,但在 GHF 中提及的频率高于 EA。水果、蔬菜、根茎和块茎类食物在 GHF 中更为常见,而 EA 群体的儿童谷物摄入量高于 GHF,这与一些研究报告的不良健康后果有关。48 项研究对不同生命阶段的饮食进行了比较:28 项研究显示了儿童与成人饮食的差异,20 项研究显示了儿童与成人饮食的相似性。气候区是当地生态系统提供的食物模式的驱动因素。智人进化的证据表明,人类需要营养丰富的食物和优质蛋白质,并在食物种类内和食物种类间增加食物的多样性。公共卫生解决方案可将这些发现纳入以食物为基础的儿童膳食指南。
{"title":"Child dietary patterns in <i>Homo sapiens</i> evolution: A systematic review.","authors":"Lora L Iannotti, Emmanuel A Gyimah, Miranda Reid, Melissa Chapnick, Mary Kate Cartmill, Chessa K Lutter, Charles Hilton, Theresa E Gildner, Elizabeth A Quinn","doi":"10.1093/emph/eoac027","DOIUrl":"10.1093/emph/eoac027","url":null,"abstract":"<p><p>Dietary patterns spanning millennia could inform contemporary public health nutrition. Children are largely absent from evidence describing diets throughout human evolution, despite prevalent malnutrition today signaling a potential genome-environment divergence. This systematic review aimed to identify dietary patterns of children ages 6 months to 10 years consumed before the widespread adoption of agriculture. Metrics of mention frequency (counts of food types reported) and food groups (globally standardized categories) were applied to: compare diets across subsistence modes [gatherer-hunter-fisher (GHF), early agriculture (EA) groups]; examine diet quality and diversity; and characterize differences by life course phase and environmental context defined using Köppen-Geiger climate zones. The review yielded child diet information from 95 cultural groups (52 from GHF; 43 from EA/mixed subsistence groups). Animal foods (terrestrial and aquatic) were the most frequently mentioned food groups in dietary patterns across subsistence modes, though at higher frequencies in GHF than in EA. A broad range of fruits, vegetables, roots and tubers were more common in GHF, while children from EA groups consumed more cereals than GHF, associated with poor health consequences as reported in some studies. Forty-eight studies compared diets across life course phases: 28 showed differences and 20 demonstrated similarities in child versus adult diets. Climate zone was a driver of food patterns provisioned from local ecosystems. Evidence from <i>Homo sapiens</i> evolution points to the need for nutrient-dense foods with high quality proteins and greater variety within and across food groups. Public health solutions could integrate these findings into food-based dietary guidelines for children.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2022-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9415195/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40332027","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Associations of age at marriage and first pregnancy with maternal nutritional status in Nepal. 尼泊尔结婚年龄和首次怀孕与产妇营养状况的关系。
IF 3.3 3区 医学 Q2 EVOLUTIONARY BIOLOGY Pub Date : 2022-07-25 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac025
Jonathan C K Wells, Akanksha A Marphatia, Dharma S Manandhar, Mario Cortina-Borja, Alice M Reid, Naomi S Saville

Background and objectives: Women's nutritional status is important for their health and reproductive fitness. In a population where early marriage is common, we investigated how women's nutritional status is associated with their age at marriage (marking a geographical transfer between households), and at first pregnancy.

Methodology: We used data from a cluster-randomized control trial from lowland Nepal (n = 4071). Outcomes including body mass index (BMI) were measured in early pregnancy and trial endpoint, after delivery. We fitted mixed-effects linear and logistic regression models to estimate associations of age at marriage and age at pregnancy with outcomes, and with odds of chronic energy deficiency (CED, BMI <18.5 kg/m2), at both timepoints.

Results: BMI in early pregnancy averaged 20.9 kg/m2, with CED prevalence of 12.5%. In 750 women measured twice, BMI declined 1.2 (95% confidence interval 1.1, 1.3) kg/m2 between early pregnancy and endpoint, when CED prevalence was 35.5%. Early pregnancy was associated in dose-response manner with poorer nutritional status. Early marriage was independently associated with poorer nutritional status among those pregnant ≤15 years, but with better nutritional status among those pregnant ≥19 years.

Conclusions and implications: The primary determinant of nutritional status was age at pregnancy, but this association also varied by marriage age. Our results suggest that natal households may marry their daughters earlier if food insecure, but that their nutritional status can improve in the marital household if pregnancy is delayed. Marriage age therefore determines which household funds adolescent weight gain, with implications for Darwinian fitness of the members of both households.

背景和目的:妇女的营养状况对其健康和生殖能力非常重要。在早婚现象普遍的人口中,我们调查了妇女的营养状况与其结婚年龄(标志着家庭之间的地理迁移)和首次怀孕的年龄之间的关系:我们使用了尼泊尔低地群组随机对照试验的数据(n = 4071)。包括体重指数(BMI)在内的结果是在妊娠早期和试验终点(分娩后)测量的。我们建立了混合效应线性和逻辑回归模型,以估计结婚年龄和怀孕年龄与两个时间点的结果以及慢性能量缺乏症(CED,BMI 2)几率之间的关系:孕早期的 BMI 平均为 20.9 kg/m2,CED 患病率为 12.5%。在 750 名接受过两次测量的妇女中,从怀孕早期到终点(CED 患病率为 35.5%),BMI 下降了 1.2(95% 置信区间为 1.1,1.3)kg/m2。早孕与营养状况较差呈剂量反应关系。早婚与怀孕≤15 年的孕妇营养状况较差独立相关,但与怀孕≥19 年的孕妇营养状况较好相关:营养状况的主要决定因素是怀孕年龄,但这种关联也因结婚年龄而异。我们的研究结果表明,如果粮食无保障,娘家可能会让女儿早些出嫁,但如果推迟怀孕,女儿在娘家的营养状况会有所改善。因此,结婚年龄决定了哪个家庭为青少年体重增加提供资金,这对两个家庭的成员的达尔文健康状况都有影响。
{"title":"Associations of age at marriage and first pregnancy with maternal nutritional status in Nepal.","authors":"Jonathan C K Wells, Akanksha A Marphatia, Dharma S Manandhar, Mario Cortina-Borja, Alice M Reid, Naomi S Saville","doi":"10.1093/emph/eoac025","DOIUrl":"10.1093/emph/eoac025","url":null,"abstract":"<p><strong>Background and objectives: </strong>Women's nutritional status is important for their health and reproductive fitness. In a population where early marriage is common, we investigated how women's nutritional status is associated with their age at marriage (marking a geographical transfer between households), and at first pregnancy.</p><p><strong>Methodology: </strong>We used data from a cluster-randomized control trial from lowland Nepal (<i>n</i> = 4071). Outcomes including body mass index (BMI) were measured in early pregnancy and trial endpoint, after delivery. We fitted mixed-effects linear and logistic regression models to estimate associations of age at marriage and age at pregnancy with outcomes, and with odds of chronic energy deficiency (CED, BMI <18.5 kg/m<sup>2</sup>), at both timepoints.</p><p><strong>Results: </strong>BMI in early pregnancy averaged 20.9 kg/m<sup>2</sup>, with CED prevalence of 12.5%. In 750 women measured twice, BMI declined 1.2 (95% confidence interval 1.1, 1.3) kg/m<sup>2</sup> between early pregnancy and endpoint, when CED prevalence was 35.5%. Early pregnancy was associated in dose-response manner with poorer nutritional status. Early marriage was independently associated with poorer nutritional status among those pregnant ≤15 years, but with better nutritional status among those pregnant ≥19 years.</p><p><strong>Conclusions and implications: </strong>The primary determinant of nutritional status was age at pregnancy, but this association also varied by marriage age. Our results suggest that natal households may marry their daughters earlier if food insecure, but that their nutritional status can improve in the marital household if pregnancy is delayed. Marriage age therefore determines which household funds adolescent weight gain, with implications for Darwinian fitness of the members of both households.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2022-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9346504/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40588313","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogenetic prioritization of HIV-1 transmission clusters with viral lineage-level diversification rates. HIV-1传播集群的系统发育优先级与病毒谱系水平多样化率。
IF 3.7 3区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2022-07-22 eCollection Date: 2022-01-01 DOI: 10.1093/emph/eoac026
Rachel L Miller, Angela McLaughlin, Richard H Liang, John Harding, Jason Wong, Anh Q Le, Chanson J Brumme, Julio S G Montaner, Jeffrey B Joy

Background and objectives: Public health officials faced with a large number of transmission clusters require a rapid, scalable and unbiased way to prioritize distribution of limited resources to maximize benefits. We hypothesize that transmission cluster prioritization based on phylogenetically derived lineage-level diversification rates will perform as well as or better than commonly used growth-based prioritization measures, without need for historical data or subjective interpretation.

Methodology: 9822 HIV pol sequences collected during routine drug resistance genotyping were used alongside simulated sequence data to infer sets of phylogenetic transmission clusters via patristic distance threshold. Prioritized clusters inferred from empirical data were compared to those prioritized by the current public health protocols. Prioritization of simulated clusters was evaluated based on correlation of a given prioritization measure with future cluster growth, as well as the number of direct downstream transmissions from cluster members.

Results: Empirical data suggest diversification rate-based measures perform comparably to growth-based measures in recreating public heath prioritization choices. However, unbiased simulated data reveals phylogenetic diversification rate-based measures perform better in predicting future cluster growth relative to growth-based measures, particularly long-term growth. Diversification rate-based measures also display advantages over growth-based measures in highlighting groups with greater future transmission events compared to random groups of the same size. Furthermore, diversification rate measures were notably more robust to effects of decreased sampling proportion.

Conclusions and implications: Our findings indicate diversification rate-based measures frequently outperform growth-based measures in predicting future cluster growth and offer several additional advantages beneficial to optimizing the public health prioritization process.

背景和目标:面临大量传播聚集的公共卫生官员需要一种快速、可扩展和公正的方式来优先分配有限的资源,以实现利益最大化。我们假设,在不需要历史数据或主观解释的情况下,基于系统发育衍生的谱系水平多样化率的传播集群优先级排序将与常用的基于生长的优先级度量一样好,甚至更好。方法:利用常规耐药基因分型收集的9822个HIV pol序列,结合模拟序列数据,通过教父距离阈值推断出一组系统发育传播簇。将从经验数据推断出的优先群集与现行公共卫生协议确定的优先群集进行比较。基于给定的优先级度量与未来集群增长的相关性,以及集群成员直接下游传输的数量,评估了模拟集群的优先级。结果:经验数据表明,在重建公共卫生优先选择方面,基于多样化率的措施与基于增长的措施表现相当。然而,无偏模拟数据显示,相对于基于生长的指标,基于系统发育多样化率的指标在预测未来集群生长方面表现更好,尤其是长期增长。与相同规模的随机群体相比,基于多样化率的衡量标准在突出具有更大未来传播事件的群体方面也显示出优于基于增长的衡量标准的优势。此外,多样化率指标对抽样比例降低的影响显著增强。结论和意义:我们的研究结果表明,在预测未来集群增长方面,基于多样化率的指标往往优于基于增长的指标,并提供了一些有利于优化公共卫生优先排序过程的额外优势。
{"title":"Phylogenetic prioritization of HIV-1 transmission clusters with viral lineage-level diversification rates.","authors":"Rachel L Miller,&nbsp;Angela McLaughlin,&nbsp;Richard H Liang,&nbsp;John Harding,&nbsp;Jason Wong,&nbsp;Anh Q Le,&nbsp;Chanson J Brumme,&nbsp;Julio S G Montaner,&nbsp;Jeffrey B Joy","doi":"10.1093/emph/eoac026","DOIUrl":"https://doi.org/10.1093/emph/eoac026","url":null,"abstract":"<p><strong>Background and objectives: </strong>Public health officials faced with a large number of transmission clusters require a rapid, scalable and unbiased way to prioritize distribution of limited resources to maximize benefits. We hypothesize that transmission cluster prioritization based on phylogenetically derived lineage-level diversification rates will perform as well as or better than commonly used growth-based prioritization measures, without need for historical data or subjective interpretation.</p><p><strong>Methodology: </strong>9822 HIV pol sequences collected during routine drug resistance genotyping were used alongside simulated sequence data to infer sets of phylogenetic transmission clusters via patristic distance threshold. Prioritized clusters inferred from empirical data were compared to those prioritized by the current public health protocols. Prioritization of simulated clusters was evaluated based on correlation of a given prioritization measure with future cluster growth, as well as the number of direct downstream transmissions from cluster members.</p><p><strong>Results: </strong>Empirical data suggest diversification rate-based measures perform comparably to growth-based measures in recreating public heath prioritization choices. However, unbiased simulated data reveals phylogenetic diversification rate-based measures perform better in predicting future cluster growth relative to growth-based measures, particularly long-term growth. Diversification rate-based measures also display advantages over growth-based measures in highlighting groups with greater future transmission events compared to random groups of the same size. Furthermore, diversification rate measures were notably more robust to effects of decreased sampling proportion.</p><p><strong>Conclusions and implications: </strong>Our findings indicate diversification rate-based measures frequently outperform growth-based measures in predicting future cluster growth and offer several additional advantages beneficial to optimizing the public health prioritization process.</p>","PeriodicalId":12156,"journal":{"name":"Evolution, Medicine, and Public Health","volume":null,"pages":null},"PeriodicalIF":3.7,"publicationDate":"2022-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9311310/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40554594","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
期刊
Evolution, Medicine, and Public Health
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1