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The impact of generative artificial intelligence (AI) on the development of personalized pharmaceuticals and the future of precision medicine. 生成式人工智能(AI)对个性化药品发展和精准医疗未来的影响。
IF 3.8 3区 生物学 Q1 BIOLOGY Pub Date : 2024-11-26 eCollection Date: 2024-01-01 DOI: 10.17179/excli2024-7915
Varghese Edwin Hillary, Rajiv Gandhi Gopalsamy, Lucas Alves da Mota Santana, Pamela Chaves de Jesus, Jessiane Bispo de Souza, Deise Maria Rego Rodrigues Silva, Pedro Henrique Macedo Moura, Ronaldy Santana Santos, Marina Dos Santos Barreto, Lysandro Pinto Borges, Eloia Emanuelly Dias Silva
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引用次数: 0
Exploring the therapeutic potential of Emblica officinalis natural compounds against hepatocellular carcinoma (HCC): a computational approach. 探索恩布利加天然化合物对肝细胞癌(HCC)的治疗潜力:计算方法。
IF 3.8 3区 生物学 Q1 BIOLOGY Pub Date : 2024-11-26 eCollection Date: 2024-01-01 DOI: 10.17179/excli2024-7970
Sidra Ilyas, Abdul Manan, Yeojin Choi, Donghun Lee

Hepatocellular carcinoma (HCC) is the fifth leading cause of cancer related deaths globally. Despite advancements in treatment, drug resistance and adverse side effects have spurred the search for novel therapeutic strategies. This study aimed to investigate how the Emblica officinalis can inhibit key targets involved in HCC progression. Screening of the reported compounds based on ADMET profile and identification of protein targets was done using the literature survey. Protein targets were divided into four major categories including inflammatory, angiogenic, anti-apoptotic as well as proliferative targets. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed to reveal the functional roles of genes. The STRING database was used to analyze the protein-protein interactions (PPI) of target genes. Docking was employed to predict the binding affinity of compounds with target proteins. Subsequently, MD simulation was conducted to assess the stability and dynamics of protein-ligand complexes. A total of 22 active compounds with 25 protein targets have been identified. These targets have a major role in controlling biological processes such as apoptosis, signaling and cellular interactions. KEGG pathway analysis showed that cancer, atherosclerosis, PI3K-Akt, EGFR tyrosine kinase inhibitor resistance and MAPK signaling pathways are mainly involved. Molecular docking by Mcule platform demonstrated that emblicanin A, punigluconin, penta-o-galloylglucose and quercetin showed higher binding energy affinities with BCL2, BCL2L1, c-Met, HSP70, EGFR, FGFR1, PTGS2 and TNFα. MD simulation revealed conformational changes, flexibility, interactions and compactness of protein-ligand complex. The stable protein binding interactions suggest the potential of compounds to inhibit the functions of target proteins. These results suggest that compounds derived from E. officinalis may have the therapeutic potential for treating HCC. See also the graphical abstract(Fig. 1).

肝细胞癌(HCC)是全球癌症相关死亡的第五大原因。尽管在治疗方面取得了进步,但耐药性和不良副作用促使人们寻找新的治疗策略。本研究旨在探讨恩布利卡如何抑制参与HCC进展的关键靶点。利用文献调查的方法,根据ADMET谱筛选所报道的化合物,并鉴定蛋白质靶点。蛋白质靶点分为四大类,包括炎症、血管生成、抗凋亡和增殖靶点。基因本体(GO)和京都基因与基因组百科全书(KEGG)分析揭示了基因的功能作用。使用STRING数据库分析靶基因的蛋白-蛋白相互作用(PPI)。对接用于预测化合物与靶蛋白的结合亲和力。随后,进行了MD模拟,以评估蛋白质配体复合物的稳定性和动力学。共鉴定出22种活性化合物和25个蛋白靶点。这些靶点在控制细胞凋亡、信号传导和细胞相互作用等生物过程中起着重要作用。KEGG通路分析显示,主要参与肿瘤、动脉粥样硬化、PI3K-Akt、EGFR酪氨酸激酶抑制剂耐药和MAPK信号通路。通过Mcule平台进行分子对接,发现emblicanin A、punigluconin、penta-o- gallylglucose和槲皮素与BCL2、BCL2L1、c-Met、HSP70、EGFR、FGFR1、PTGS2和TNFα具有较高的结合能亲和力。MD模拟揭示了蛋白质-配体复合物的构象变化、柔韧性、相互作用和紧密性。稳定的蛋白质结合相互作用表明化合物有抑制靶蛋白功能的潜力。这些结果表明,从officinalis中提取的化合物可能具有治疗HCC的治疗潜力。另见图解摘要(图1)。1).
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引用次数: 0
Validation of NBD-coupled taurocholic acid for intravital analysis of bile acid transport in liver and kidney of mice. 验证 NBD 偶联牛磺胆酸用于小鼠肝脏和肾脏胆汁酸转运的体内分析。
IF 3.8 3区 生物学 Q1 BIOLOGY Pub Date : 2024-10-30 eCollection Date: 2024-01-01 DOI: 10.17179/excli2024-7707
Ahmed Ghallab, Sebastian Kunz, Celine Drossel, Veronica Billo, Adrian Friebel, Mats Georg, Richard Göttlich, Zaynab Hobloss, Reham Hassan, Maiju Myllys, Abdel-Latief Seddek, Noha Abdelmageed, Paul A Dawson, Erik Lindström, Stefan Hoehme, Jan G Hengstler, Joachim Geyer

Fluorophore-coupled bile acids (BA) represent an important tool for intravital analysis of BA flux in animal models of cholestatic diseases. However, addition of a fluorophore to a BA may alter transport properties. We developed and validated a 4-chloro-7-nitrobenzo-2-oxa-1,3-diazole-coupled taurocholic acid (3β-NBD-TCA) as a probe for intravital analysis of BA homeostasis. We compared transport of 3β-NBD-TCA to [3H]-TCA in HEK293 cells stably expressing the mouse hepatic or renal BA carriers mNtcp or mAsbt, respectively. We also studied distribution kinetics intravitally in livers and kidneys of anesthetized wildtype and mOatp1a/1b cluster knockout mice (OatpKO) with and without administration of the Ntcp inhibitor Myrcludex B and the ASBT inhibitor AS0369. In vitro, 3β-NBD-TCA and [3H]-TCA showed comparable concentration- and time-dependent transport via mNtcp and mAsbt as well as similar inhibition kinetics for Myrcludex B and AS0369. Intravital analysis in the livers of wildtype and OatpKO mice revealed contribution of both mNtcp and mOatp1a/1b in the 3β-NBD-TCA uptake from the sinusoidal blood into hepatocytes. Combined deletion of mOatp1a/1b and inhibition of mNtcp by Myrcludex B blocked the uptake of 3β-NBD-TCA from sinusoidal blood into hepatocytes. This led to an increase of 3β-NBD-TCA signal in the systemic circulation including renal capillaries, followed by strong enrichment in a subpopulation of proximal renal tubular epithelial cells (TEC). The enrichment of 3β-NBD-TCA in TEC was strongly reduced by the systemic ASBT inhibitor AS0369. NBD-coupled TCA has similar transport kinetics as [3H]-TCA and can be used as a tool to study hepatorenal BA transport. See also the graphical abstract(Fig. 1).

荧光团偶联胆汁酸(BA)是在胆汁淤积性疾病动物模型中进行胆汁酸通量体内分析的重要工具。然而,在胆汁酸中添加荧光团可能会改变其转运特性。我们开发并验证了一种 4-氯-7-硝基苯并-2-氧杂-1,3-二唑偶联牛胆酸(3β-NBD-TCA)探针,可用于胆汁酸稳态的体内分析。我们比较了 3β-NBD-TCA 和 [3H]-TCA 在分别稳定表达小鼠肝脏或肾脏 BA 载体 mNtcp 或 mAsbt 的 HEK293 细胞中的转运情况。我们还对麻醉后的野生型小鼠和 mOatp1a/1b 基因簇敲除小鼠(OatpKO)肝脏和肾脏的体内分布动力学进行了研究,包括是否给予 Ntcp 抑制剂 Myrcludex B 和 ASBT 抑制剂 AS0369。在体外,3β-NBD-三氯乙酸和[3H]-四氯乙酸通过mNtcp和mAsbt显示出相似的浓度和时间依赖性转运,Myrcludex B和AS0369也显示出相似的抑制动力学。对野生型小鼠和 OatpKO 小鼠肝脏的内视分析表明,mNtcp 和 mOatp1a/1b 在 3β-NBD-TCA 从窦状血液摄入肝细胞的过程中都起了作用。联合删除 mOatp1a/1b 和用 Myrcludex B 抑制 mNtcp 可阻止 3β-NBD-TCA 从窦状血液摄入肝细胞。这导致包括肾毛细血管在内的全身循环中的 3β-NBD-TCA 信号增加,随后在近端肾小管上皮细胞 (TEC) 亚群中强烈富集。全身 ASBT 抑制剂 AS0369 可显著减少 3β-NBD-TCA 在 TEC 中的富集。NBD偶联三氯乙酸的转运动力学与[3H]-三氯乙酸相似,可用作研究肝肾BA转运的工具。另见图表摘要(图 1)。
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引用次数: 0
Amplifying cancer immunity: AMPK activators and gammadelta T cells unveiled. 增强癌症免疫:AMPK激活剂和γ - T细胞被揭开面纱。
IF 3.8 3区 生物学 Q1 BIOLOGY Pub Date : 2024-10-29 eCollection Date: 2024-01-01 DOI: 10.17179/excli2024-7784
Firoz Anwar, Fahad A Al-Abbasi, Naif Abdullaha R Almalki, Sultan Alhayyani, Amita Verma, Vikas Kumar
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引用次数: 0
Enhancing cancer care with improved checkpoint inhibitors: a focus on PD-1/PD-L1. 用改进的检查点抑制剂加强癌症治疗:重点是PD-1/PD-L1
IF 3.8 3区 生物学 Q1 BIOLOGY Pub Date : 2024-10-29 eCollection Date: 2024-01-01 DOI: 10.17179/excli2024-7783
Vickram A S, Saghya Infant Shofia, A Saravanan, Vidhya Lakshmi Sivakumar, Packiyam Thamarai, Manikandan Sivasubramanian, Shivani Chopra, Hitesh Chopra

The emergence of checkpoint inhibitors targeting the PD-1/PD-L1 axis marks a paradigm shift in cancer therapy, offering a novel avenue for enhancing patient outcomes. This review examines the structural and functional dynamics of PD-1 and PD-L1 while exploring the clinical implications of current PD-1/PD-L1 monoclonal antibodies. Highlighting recent advancements, this paper delves into the promising results from combination therapies that present a multifaceted attack on tumor progression. Despite the success observed across various cancer types, challenges such as immune resistance remain. Future considerations are discussed with an emphasis on the need for further clinical studies, aiming to refine and broaden the curative potential of PD-1/PD-L1 inhibitors in oncology. This review postulates that ongoing research and innovative approaches could significantly enhance cancer care, making immunotherapy an even more central strategy in the fight against cancer. See also the graphical abstract(Fig. 1).

靶向PD-1/PD-L1轴的检查点抑制剂的出现标志着癌症治疗的范式转变,为提高患者预后提供了新的途径。本文综述了PD-1和PD-L1的结构和功能动力学,同时探讨了目前PD-1/PD-L1单克隆抗体的临床意义。强调最近的进展,本文深入研究了联合治疗的有希望的结果,这些联合治疗对肿瘤进展提出了多方面的攻击。尽管在各种癌症类型中观察到成功,但免疫抵抗等挑战仍然存在。讨论了未来的考虑,重点是需要进一步的临床研究,旨在完善和扩大PD-1/PD-L1抑制剂在肿瘤学中的治疗潜力。这篇综述假设正在进行的研究和创新方法可以显著提高癌症治疗,使免疫治疗成为对抗癌症的更核心策略。另见图解摘要(图1)。1).
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引用次数: 0
Deoxybouvardin-glucoside induces apoptosis in non-small cell lung cancer cells by targeting EGFR/MET and AKT signaling pathway. 脱氧毛花苷葡萄糖苷通过靶向表皮生长因子受体/MET和AKT信号通路诱导非小细胞肺癌细胞凋亡。
IF 3.8 3区 生物学 Q1 BIOLOGY Pub Date : 2024-10-21 eCollection Date: 2024-01-01 DOI: 10.17179/excli2024-7359
Na Yeong Lee, Sang Hoon Joo, A-Young Nam, Seung-On Lee, Goo Yoon, Seung-Sik Cho, Yung Hyun Choi, Jin Woo Park, Jung-Hyun Shim

Non-small cell lung cancer (NSCLC) is a leading cause of cancer-related deaths worldwide. Its treatment is complicated due to the development of resistance to conventional chemotherapy and targeted therapy. Deoxybouvardin and related cyclic hexapeptides reportedly exhibit antitumor activities, but their mechanisms of action remain unclear. This study aimed to investigate the anticancer mechanisms of deoxybouvardin glucoside (DBG), a glucosidic form of deoxybouvardin from Rubia species, in gefitinib (GEF)-sensitive and -resistant NSCLC HCC827 cells. The effects of DBG treatment on cell proliferation were evaluated using a viability assay. The inhibitory effects of DBG treatment on the activities and phosphorylation of the protein kinases epidermal growth factor receptor (EGFR), MET, and AKTs were assessed using in vitro kinase assay and western blot, respectively. DBG treatment inhibited the growth of HCC827 cells in a concentration- and time-dependent manner. Results of in vitro kinase assay and western blotting showed that DBG treatment significantly inhibited the activities and phosphorylation of the protein kinases EGFR, MET, and AKT. Prediction using molecular docking showed that DBG is located in the ATP-binding pockets of these kinases, supporting the kinase inhibition by DBG treatment. Moreover, DBG treatment induced reactive oxygen species (ROS) generation and cell cycle arrest in the cells. The induction of apoptosis by DBG through caspase activation was confirmed by Z-VAD-FMK treatment. In summary, DBG treatment inhibited the growth of GEF-sensitive and -resistant NSCLC cells by targeting EGFR, MET, and AKTs. Moreover, it induced apoptosis by inducing ROS generation and caspase activation. These results indicate that DBG is a potential therapeutic agent for the treatment of GEF-resistant NSCLC. See also the graphical abstract(Fig. 1).

非小细胞肺癌(NSCLC)是全球癌症相关死亡的主要原因。由于对传统化疗和靶向治疗产生抗药性,其治疗变得复杂。据报道,脱氧布瓦汀和相关的环六肽具有抗肿瘤活性,但其作用机制仍不清楚。本研究旨在探讨脱氧布瓦汀葡萄糖苷(DBG)的抗癌机制,DBG是茜草科植物脱氧布瓦汀的一种葡糖苷形式,在吉非替尼(GEF)敏感和耐药NSCLC HCC827细胞中的作用机制。使用活力测定法评估了 DBG 处理对细胞增殖的影响。采用体外激酶测定法和 Western 印迹法分别评估了 DBG 处理对表皮生长因子受体(EGFR)、MET 和 AKTs 蛋白激酶活性和磷酸化的抑制作用。DBG以浓度和时间依赖性方式抑制了HCC827细胞的生长。体外激酶检测和 Western 印迹检测结果表明,DBG 能显著抑制表皮生长因子受体、MET 和 AKT 蛋白激酶的活性和磷酸化。分子对接预测表明,DBG 位于这些激酶的 ATP 结合口袋中,支持 DBG 处理对激酶的抑制作用。此外,DBG还能诱导细胞产生活性氧(ROS)并导致细胞周期停滞。Z-VAD-FMK 处理证实了 DBG 通过 caspase 激活诱导细胞凋亡。总之,DBG 通过靶向表皮生长因子受体、MET 和 AKT 抑制了对 GEF 敏感和耐药的 NSCLC 细胞的生长。此外,它还能通过诱导 ROS 生成和 caspase 激活诱导细胞凋亡。这些结果表明,DBG 是一种治疗 GEF 抗性 NSCLC 的潜在药物。另请参阅图表摘要(图 1)。
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引用次数: 0
Light-based therapies and radiodermatitis: a case series report. 光疗法和放射性皮炎:一个病例系列报告。
IF 3.8 3区 生物学 Q1 BIOLOGY Pub Date : 2024-10-18 eCollection Date: 2024-01-01 DOI: 10.17179/excli2024-7749
Talita Oliveira de Lima, Karina Alexandra Batista da Silva Freitas, Karen Aline Batista da Silva, Maria Fernanda Setúbal Destro Rodrigues, Thais Barbosa Dos Santos, Illora Aswinkumar Darbar Shimozato, Christiane Pavani, Rebeca Boltes Cecatto

The main treatments for cancer are radiotherapy and chemotherapy, but they can generate side effects such as fatigue, myelosuppression, and radiodermatitis. The Multinational Association of Supportive Care in Cancer already recommends the use of laser for radiodermatitis in breast cancer patients. However, in relation to head and neck cancer patients, there is a lack of studies clearly demonstrating clinical effects and identifying the best light parameters for the treatment of radiodermatitis. This study reports on three oncological patients with radiodermatitis treated with light-based therapies to show clinical improvements in lesion grades and to discuss the effects of laser and its parameters. A retrospective report of three head and neck cancer patients with radiodermatitis, treated with photobiomodulation and photodynamic therapy at an outpatient health clinical facility. The Visual Analog Scale, Toxicity Criteria of the Radiation Therapy Oncology Group (RTOG) Scale, and the clinical characteristics of lesions were evaluated before and after a photobiomodulation plus photodynamic therapy protocol. Improvements were observed in cases with RTOG grade III with just 4 treatment sessions required for complete healing of the lesions. The patient with RTOG grade IV required antibiotic therapy, temporary suspension of radiotherapy, and more than 4 light sessions to achieve improvements. None of the patients showed worsening of the lesions, necrosis, or infection after treatment with no adverse effects. Head and neck cancer patients with radiodermatitis treated with phototherapy obtained good results in wound healing and pain relief in a short period. These case reports embody the easy-to-apply implementation of a light protocol in a health facility based on previous scientific evidence with positive results and no short-term side effects. In light of the negative impact on quality of life caused by radiodermatitis, health teams should be encouraged to design research study protocols involving light-based therapies.

癌症的主要治疗方法是放疗和化疗,但它们会产生疲劳、骨髓抑制、放射性皮炎等副作用。多国癌症支持治疗协会已经建议使用激光治疗乳腺癌患者的放射性皮炎。然而,对于头颈癌患者,缺乏明确证明其临床效果和确定治疗放射性皮炎的最佳光照参数的研究。本研究报告了三例肿瘤患者的放射性皮炎,用基于光的疗法治疗,以显示病变等级的临床改善,并讨论激光及其参数的影响。回顾性报告三头颈癌患者放射性皮炎,在门诊医疗机构接受光生物调节和光动力疗法治疗。在光生物调节+光动力治疗方案前后,评估视觉模拟量表、放射治疗肿瘤组毒性标准(RTOG)量表以及病变的临床特征。在RTOG III级病例中观察到改善,仅需4次治疗即可完全愈合病变。RTOG IV级患者需要抗生素治疗,暂时停止放疗,4次以上轻疗程才能达到改善。治疗后,所有患者均未出现病变恶化、坏死或感染,无不良反应。头颈部肿瘤放射性皮炎患者采用光疗治疗,短期内创面愈合、疼痛缓解效果良好。这些病例报告体现了在卫生机构中根据以前的科学证据易于实施的轻型方案,取得了积极成果,没有短期副作用。鉴于放射性皮炎对生活质量造成的负面影响,应鼓励保健小组设计涉及光疗法的研究方案。
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引用次数: 0
A paradigm shift in the detection of bloodborne pathogens: conventional approaches to recent detection techniques. 血液传播病原体检测模式的转变:从传统方法到最新检测技术。
IF 3.8 3区 生物学 Q1 BIOLOGY Pub Date : 2024-10-17 eCollection Date: 2024-01-01 DOI: 10.17179/excli2024-7392
Sonali Khanal, Manjusha Pillai, Deblina Biswas, Muhammad Torequl Islam, Rachna Verma, Kamil Kuca, Dinesh Kumar, Asim Najmi, Khalid Zoghebi, Asaad Khalid, Syam Mohan

Bloodborne pathogens (BBPs) pose formidable challenges in the realm of infectious diseases, representing significant risks to both human and animal health worldwide. The review paper provides a thorough examination of bloodborne pathogens, highlighting the serious worldwide threat they pose and the effects they have on animal and human health. It addresses the potential dangers of exposure that healthcare workers confront, which have affected 3 million people annually, and investigates the many pathways by which these viruses can spread. The limitations of traditional detection techniques like PCR and ELISA have been criticized, which has led to the investigation of new detection methods driven by advances in sensor technology. The objective is to increase the amount of knowledge that is available regarding bloodborne infections as well as effective strategies for their management and detection. This review provides a thorough overview of common bloodborne infections, including their patterns of transmission, and detection techniques.

血源性病原体(BBPs)在传染病领域构成了严峻的挑战,对全球人类和动物健康构成了重大风险。这篇综述论文对血源性病原体进行了深入研究,强调了它们在全球范围内造成的严重威胁及其对动物和人类健康的影响。它探讨了医护人员面临的潜在接触危险(每年有 300 万人受到影响),并研究了这些病毒传播的多种途径。聚合酶链式反应(PCR)和酶联免疫吸附试验(ELISA)等传统检测技术的局限性受到了批评,这促使人们开始研究由传感器技术进步推动的新检测方法。我们的目标是增加有关血源性感染的知识量,以及管理和检测血源性感染的有效策略。本综述全面概述了常见的血源性感染,包括其传播模式和检测技术。
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引用次数: 0
Fisetin-loaded nanoemulsion ameliorates lung cancer pathogenesis via downregulating cathepsin-B, galectin-3 and enolase in an in vitro setting. 在体外环境中,鱼腥草素纳米乳液通过下调 cathepsin-B、galectin-3 和烯醇化酶改善肺癌发病机制。
IF 3.8 3区 生物学 Q1 BIOLOGY Pub Date : 2024-10-14 eCollection Date: 2024-01-01 DOI: 10.17179/excli2024-7583
Ayeh Bani Saeid, Keshav Raj Paudel, Gabriele De Rubis, Samir Mehndiratta, Sofia Kokkinis, Sukriti Vishwas, Stewart Yeung, Gaurav Gupta, Sachin Kumar Singh, Kamal Dua
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引用次数: 0
Head and neck cancer care: advanced molecular and genetic diagnostics. 头颈癌护理:先进的分子和基因诊断。
IF 3.8 3区 生物学 Q1 BIOLOGY Pub Date : 2024-10-10 eCollection Date: 2024-01-01 DOI: 10.17179/excli2024-7727
Rabab Fatima
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引用次数: 0
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