Enterococcus spp. have been shown to have gastrointestinal tract protective functions; our recent results suggest that membrane vesicles (MVs) play an important role in the gastric protection of Enterococcus faecium (E. faecium). The specific function is determined by molecular compositions of MVs. To resolve biocargo components in E. faecium MVs (EfmMVs), MVs were isolated from E. faecium culture. Transcriptomics, label-free quantitative proteomics, and untargeted metabolomics were performed to obtain information about the complexity of ribonucleic acids (RNAs), proteins, and metabolites biocargo they carry, respectively. RNA-sequencing identified a total of 2122 transcripts. The top 20 transcripts accounted for 27.63% of total counts, which, including enzymes, participate in glycolysis, ribosomal proteins, DNA-directed RNA polymerases, protein-synthesizing relative enzymes, molecules associated with protein post-translational processing and transport, and peptidoglycan lyases. Label-free quantitative proteomics analysis identified a total of 711 proteins. The top 20 proteins accounted for 48.02% of all identified proteins, which including ribosomal proteins, enzymes participate in glycolysis, DNA-directed RNA polymerases, protein-synthesizing relative enzymes, peptidoglycan lyases, and autolysin. Untargeted metabolomics analysis identified a total of 519 metabolites. The top 20 metabolites accounted for 79.55% of all identified metabolites, which included amino acids, substrates, or products in the metabolism of amino acids, natural organic acids, products in the metabolism of organic acids, ketone compounds, and two other compounds. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses indicated that the identified biocargo components enriched in metabolism, genetic, and environmental information processing. Overall, we hope that the current exploration of multiple "-omics" analyses of this EfmMVs will provide useful information and further groundwork for future studies on E. faecium application.
{"title":"Multiomics-Based Biocargo Components Analysis in <i>Enterococcus faecium</i> Membrane Vesicles.","authors":"Meiying Luo, Yuanyuan Zhu, Xiaofang Zhang, Junhang Sun, Xin Feng, Huihua Zhang, Qien Qi","doi":"10.1089/fpd.2024.0031","DOIUrl":"10.1089/fpd.2024.0031","url":null,"abstract":"<p><p><i>Enterococcus</i> spp. have been shown to have gastrointestinal tract protective functions; our recent results suggest that membrane vesicles (MVs) play an important role in the gastric protection of <i>Enterococcus faecium</i> (<i>E. faecium</i>). The specific function is determined by molecular compositions of MVs. To resolve biocargo components in <i>E. faecium</i> MVs (<i>Efm</i>MVs), MVs were isolated from <i>E. faecium</i> culture. Transcriptomics, label-free quantitative proteomics, and untargeted metabolomics were performed to obtain information about the complexity of ribonucleic acids (RNAs), proteins, and metabolites biocargo they carry, respectively. RNA-sequencing identified a total of 2122 transcripts. The top 20 transcripts accounted for 27.63% of total counts, which, including enzymes, participate in glycolysis, ribosomal proteins, DNA-directed RNA polymerases, protein-synthesizing relative enzymes, molecules associated with protein post-translational processing and transport, and peptidoglycan lyases. Label-free quantitative proteomics analysis identified a total of 711 proteins. The top 20 proteins accounted for 48.02% of all identified proteins, which including ribosomal proteins, enzymes participate in glycolysis, DNA-directed RNA polymerases, protein-synthesizing relative enzymes, peptidoglycan lyases, and autolysin. Untargeted metabolomics analysis identified a total of 519 metabolites. The top 20 metabolites accounted for 79.55% of all identified metabolites, which included amino acids, substrates, or products in the metabolism of amino acids, natural organic acids, products in the metabolism of organic acids, ketone compounds, and two other compounds. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses indicated that the identified biocargo components enriched in metabolism, genetic, and environmental information processing. Overall, we hope that the current exploration of multiple \"-omics\" analyses of this <i>Efm</i>MVs will provide useful information and further groundwork for future studies on <i>E. faecium</i> application.</p>","PeriodicalId":12333,"journal":{"name":"Foodborne pathogens and disease","volume":" ","pages":"752-765"},"PeriodicalIF":1.9,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141916510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This study was conducted in Bejaia, Algeria, to determine the presence of Salmonella in fresh watermelon (n = 105), soil (n = 23), and irrigation water samples (n = 17) collected from two different farms. After isolation, antimicrobial susceptibility testing, serotype determination, multilocus sequence typing, antimicrobial resistance genes detection, and whole genome sequencing were performed. Twenty watermelon samples (19%) were contaminated with Salmonella, but none were found in the soil or irrigation water. Among the 20 Salmonella isolates, 2 serovars were identified (Salmonella Liverpool and Salmonella Anatum), belonging to sequence types ST1959 and ST64, respectively. Ten Salmonella isolates showed significant resistance to nalidixic acid, ofloxacin, and ciprofloxacin but were susceptible to all other antibiotics. The coexistence of point mutations (parC:p.T57S) in Quinolone Resistance-Determining Regions and the qnrB19 gene may contribute to quinolone resistance. The study identified 164 virulence genes in the Salmonella isolates. Our study found Salmonella in fresh watermelon during the preharvest season in Bejaia, Algeria. Our study indicates a relatively high prevalence of Salmonella on watermelon samples before harvest. Although we cannot directly compare our results with previous studies, it is crucial to recognize that the absence of comprehensive comparative data underscores the need for further research and surveillance.
{"title":"Prevalence and Genomic Investigation of <i>Salmonella</i> Isolates Associated with Watermelons and Their Environmental Reservoirs in Bejaia, Algeria.","authors":"Zahra Bellil, Sylvain Meyer, Valentin Tilloy, Assia Mairi, Christophe De Champs, Olivier Barraud, Abdelaziz Touati","doi":"10.1089/fpd.2023.0045","DOIUrl":"10.1089/fpd.2023.0045","url":null,"abstract":"<p><p>This study was conducted in Bejaia, Algeria, to determine the presence of <i>Salmonella</i> in fresh watermelon (<i>n</i> = 105), soil (<i>n</i> = 23), and irrigation water samples (<i>n</i> = 17) collected from two different farms. After isolation, antimicrobial susceptibility testing, serotype determination, multilocus sequence typing, antimicrobial resistance genes detection, and whole genome sequencing were performed. Twenty watermelon samples (19%) were contaminated with <i>Salmonella</i>, but none were found in the soil or irrigation water. Among the 20 <i>Salmonella</i> isolates, 2 serovars were identified (<i>Salmonella</i> Liverpool and <i>Salmonella</i> Anatum), belonging to sequence types ST1959 and ST64, respectively. Ten <i>Salmonella</i> isolates showed significant resistance to nalidixic acid, ofloxacin, and ciprofloxacin but were susceptible to all other antibiotics. The coexistence of point mutations (<i>parC</i>:p.T57S) in Quinolone Resistance-Determining Regions and the <i>qnrB19</i> gene may contribute to quinolone resistance. The study identified 164 virulence genes in the <i>Salmonella</i> isolates. Our study found <i>Salmonella</i> in fresh watermelon during the preharvest season in Bejaia, Algeria. Our study indicates a relatively high prevalence of <i>Salmonella</i> on watermelon samples before harvest. Although we cannot directly compare our results with previous studies, it is crucial to recognize that the absence of comprehensive comparative data underscores the need for further research and surveillance.</p>","PeriodicalId":12333,"journal":{"name":"Foodborne pathogens and disease","volume":" ","pages":"774-782"},"PeriodicalIF":1.9,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140174099","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-01Epub Date: 2024-08-29DOI: 10.1089/fpd.2024.0022
Danielle M Cribb, Kathryn Glass, Emily L Lancsar, Russell J Stafford, Rhiannon L Wallace, Martyn D Kirk, Angus T McLure
Campylobacter is a globally important pathogen with well-studied risk factors, but the burden of risk factors has not been quantified. We quantified the cost of illness attributable to specific domestic risk factors for C. jejuni and C. coli in Australia. We used data from a 2018-2019 case-control study to estimate odds ratios and attributable fractions for risk factors. We used data on national incidence, hospitalization, and premature mortality to quantify burden. We then applied costs related to healthcare utilization, pain and suffering, premature mortality, and lost productivity to each risk factor. In Australia, C. jejuni caused 83.0% of campylobacteriosis infections and chicken consumption resulted in the highest attributable fraction (30.0%), costing approximately US$110 million annually. The excess burden of campylobacteriosis associated with the use of proton-pump inhibitors (PPIs) was US$45 million, with almost half these costs due to disease in adults over 65 years of age. Contact with young dogs (US$30 million) and chicken feces (US$10 million) also contributed to costs and burden. Campylobacteriosis is a significant cost to Australia, particularly because of lost productivity. Effective cross-sectoral interventions to improve chicken meat safety and reduce inappropriate use of PPIs might have substantial economic and human benefits.
{"title":"Burden and Cost of <i>Campylobacter</i> Risk Factors in Australia.","authors":"Danielle M Cribb, Kathryn Glass, Emily L Lancsar, Russell J Stafford, Rhiannon L Wallace, Martyn D Kirk, Angus T McLure","doi":"10.1089/fpd.2024.0022","DOIUrl":"10.1089/fpd.2024.0022","url":null,"abstract":"<p><p><i>Campylobacter</i> is a globally important pathogen with well-studied risk factors, but the burden of risk factors has not been quantified. We quantified the cost of illness attributable to specific domestic risk factors for <i>C. jejuni</i> and <i>C. coli</i> in Australia. We used data from a 2018-2019 case-control study to estimate odds ratios and attributable fractions for risk factors. We used data on national incidence, hospitalization, and premature mortality to quantify burden. We then applied costs related to healthcare utilization, pain and suffering, premature mortality, and lost productivity to each risk factor. In Australia, <i>C. jejuni</i> caused 83.0% of campylobacteriosis infections and chicken consumption resulted in the highest attributable fraction (30.0%), costing approximately US$110 million annually. The excess burden of campylobacteriosis associated with the use of proton-pump inhibitors (PPIs) was US$45 million, with almost half these costs due to disease in adults over 65 years of age. Contact with young dogs (US$30 million) and chicken feces (US$10 million) also contributed to costs and burden. Campylobacteriosis is a significant cost to Australia, particularly because of lost productivity. Effective cross-sectoral interventions to improve chicken meat safety and reduce inappropriate use of PPIs might have substantial economic and human benefits.</p>","PeriodicalId":12333,"journal":{"name":"Foodborne pathogens and disease","volume":" ","pages":"745-751"},"PeriodicalIF":1.9,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142105979","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-01Epub Date: 2024-09-27DOI: 10.1089/fpd.2024.0049
Zhang Hongzhi, Chen Wenjie, Lu Xiaoyu, Liang Yingying, Xiao Quan, Shi Tianqi, Yu Ying, Li Ruichao, Wu Huanyu
This retrospective investigation (2019-2022) identified two plasmid-mediated mcr-10 from 6800 food samples in Shanghai, China and localized in a conjugative plasmid (pEC1918-mcr10) in Escherichia kobei from ready-to-eat food with high-level polymyxin B resistance, and a nonconjugative plasmid (pEC2001-mcr10) in E. coli from chicken. These genes were adjacent to ISEc36. This report highlights the emergence of mcr-10 from food samples in Shanghai, China. Active surveillance of vital resistance genes along food production chain should be performed.
{"title":"Identification of Polymyxin Resistance Gene <i>mcr-10</i> from Different Food Samples in Shanghai, China.","authors":"Zhang Hongzhi, Chen Wenjie, Lu Xiaoyu, Liang Yingying, Xiao Quan, Shi Tianqi, Yu Ying, Li Ruichao, Wu Huanyu","doi":"10.1089/fpd.2024.0049","DOIUrl":"10.1089/fpd.2024.0049","url":null,"abstract":"<p><p>This retrospective investigation (2019-2022) identified two plasmid-mediated <i>mcr-10</i> from 6800 food samples in Shanghai, China and localized in a conjugative plasmid (pEC1918-mcr10) in <i>Escherichia kobei</i> from ready-to-eat food with high-level polymyxin B resistance, and a nonconjugative plasmid (pEC2001-mcr10) in <i>E. coli</i> from chicken. These genes were adjacent to IS<i>Ec36</i>. This report highlights the emergence of <i>mcr-10</i> from food samples in Shanghai, China. Active surveillance of vital resistance genes along food production chain should be performed.</p>","PeriodicalId":12333,"journal":{"name":"Foodborne pathogens and disease","volume":" ","pages":"783-786"},"PeriodicalIF":1.9,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142344477","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Highlighting rotavirus (RV) as a significant food and waterborne pathogen, particularly affecting infants and children, causing serious gastrointestinal infections and dehydration, is important. It should be noted that there are significant debates regarding the effectiveness and outcomes of RV vaccination. In contrast to Turkey's nonmandatory vaccination policy, many developed countries implement mandatory vaccination policies, raising questions about their impact on disease prevalence and healthcare expenditures. Our study aims to comprehensively understand RV infections in Turkey and compare them with countries that have mandatory vaccination policies. We found similar, and even better, hospitalization rates, length of hospital stays, and laboratory parameters demonstrating the effectiveness of Turkey's independent vaccination approach. These findings contribute valuable insights to global vaccination strategies and disease control.
{"title":"Rotavirus Infections: A 2-Year Comprehensive Review in Admitted Pediastric Patients Amid Conflicting National Policies.","authors":"Yusuf Deniz, Burak Demircioğlu, İrem Kuter-Emeklioğlu, Sadrettin Ekmen, Eylem Sevınc, Erkan Dogan","doi":"10.1089/fpd.2024.0019","DOIUrl":"10.1089/fpd.2024.0019","url":null,"abstract":"<p><p>Highlighting rotavirus (RV) as a significant food and waterborne pathogen, particularly affecting infants and children, causing serious gastrointestinal infections and dehydration, is important. It should be noted that there are significant debates regarding the effectiveness and outcomes of RV vaccination. In contrast to Turkey's nonmandatory vaccination policy, many developed countries implement mandatory vaccination policies, raising questions about their impact on disease prevalence and healthcare expenditures. Our study aims to comprehensively understand RV infections in Turkey and compare them with countries that have mandatory vaccination policies. We found similar, and even better, hospitalization rates, length of hospital stays, and laboratory parameters demonstrating the effectiveness of Turkey's independent vaccination approach. These findings contribute valuable insights to global vaccination strategies and disease control.</p>","PeriodicalId":12333,"journal":{"name":"Foodborne pathogens and disease","volume":" ","pages":"738-744"},"PeriodicalIF":1.9,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142055334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Probiotics are live yeast or bacterial organisms that have beneficial effects on the host. Several microorganisms exhibit probiotic properties, the most common types being lactic acid bacteria, Bifidobacteria, spore-forming bacteria, and some yeast strains. Saccharomyces cerevisiae var. boulardii is the most important probiotic yeast species. However, another group of foodborne microorganisms, the so-called non-Saccharomyces yeasts (NSYs), has recently been re-evaluated and shown to have enormous potential in various fields of application, ranging from food fermentation to human and animal applications. NSYs are able to produce a range of bioactive compounds such as antimicrobials, mannoproteins, enzymes, polyunsaturated fatty acids, essential amino acids, vitamins, and β-glucans, which increases their potential applications as a new class of probiotics and/or alternatives to antibiotics in animal husbandry. In this review, we aim to highlight the potential and benefits of NSYs as probiotics and natural antimicrobials to improve animal health. Furthermore, the use of NSYs as biological alternatives to antibiotics to control foodborne pathogens in animal production is discussed.
{"title":"Potential of Non-<i>Saccharomyces</i> Yeasts as Probiotics and Alternatives to Antibiotics in Animal Production.","authors":"Djamel Drider, Vanessa Demey, Giuseppe Spano, Françoise Coucheney, Frédérique Chaucheyras-Durand, Mathieu Castex","doi":"10.1089/fpd.2023.0175","DOIUrl":"10.1089/fpd.2023.0175","url":null,"abstract":"<p><p>Probiotics are live yeast or bacterial organisms that have beneficial effects on the host. Several microorganisms exhibit probiotic properties, the most common types being lactic acid bacteria, <i>Bifidobacteria</i>, spore-forming bacteria, and some yeast strains. <i>Saccharomyces cerevisiae</i> var. <i>boulardii</i> is the most important probiotic yeast species. However, another group of foodborne microorganisms, the so-called non-<i>Saccharomyces</i> yeasts (NSYs), has recently been re-evaluated and shown to have enormous potential in various fields of application, ranging from food fermentation to human and animal applications. NSYs are able to produce a range of bioactive compounds such as antimicrobials, mannoproteins, enzymes, polyunsaturated fatty acids, essential amino acids, vitamins, and β-glucans, which increases their potential applications as a new class of probiotics and/or alternatives to antibiotics in animal husbandry. In this review, we aim to highlight the potential and benefits of NSYs as probiotics and natural antimicrobials to improve animal health. Furthermore, the use of NSYs as biological alternatives to antibiotics to control foodborne pathogens in animal production is discussed.</p>","PeriodicalId":12333,"journal":{"name":"Foodborne pathogens and disease","volume":" ","pages":"731-737"},"PeriodicalIF":1.9,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142046552","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-01Epub Date: 2024-09-04DOI: 10.1089/fpd.2024.0063
Liu Qingyan, Shi Susu, Liu Shuanglin, Xian Youhua, Yan Haiyang, Yuan Yuan
Staphylococcus aureus contamination and prevention has always been a major concern for food industry. This work investigated the antibacterial activity and mechanisms of lauric acid (LA) against S. aureus. Results revealed 156 μg/mL was the minimum inhibitory concentration (MIC) for LA and it retarded growth rate of S. aureus. The inhibitory effect was enhanced with LA concentration. After being treated with 2 MIC LA for 24 h, the number of S. aureus decreased by 3.56 log colony-forming unit (CFU)/mL. Scanning electron microscopy profiling revealed that LA resulted in altered morphology of S. aureus cells. In addition, propidium iodide staining of flow cytometry suggested that LA treatment disrupted the cell membrane integrity. Changes in 8-anilino-1-naphthalenesulfonic acid fluorescence indicated a depolarization change in cell membrane fluidity. For practical applications, LA also displayed an antimicrobial potential in cooked chicken food model system, with 1.25-5 g/L of LA prolonging shelf life by 2 days at 4°C. Moreover, it had no adverse effect on pH values, color in cooked chicken meat, and even reduced lipid oxidation. To sum up, LA has great antimicrobial properties and is a candidate preservative for cooked meat food.
金黄色葡萄球菌污染和预防一直是食品工业关注的主要问题。这项工作研究了月桂酸(LA)对金黄色葡萄球菌的抗菌活性和机制。结果表明,156 μg/mL 是月桂酸的最低抑菌浓度(MIC),它能延缓金黄色葡萄球菌的生长速度。随着 LA 浓度的增加,抑制作用也随之增强。用 2 MIC LA 处理 24 小时后,金黄色葡萄球菌的数量减少了 3.56 log 菌落总数(CFU)/mL。扫描电子显微镜分析显示,LA 导致金黄色葡萄球菌细胞形态改变。此外,流式细胞仪的碘化丙啶染色表明,LA 处理破坏了细胞膜的完整性。8-苯胺基-1-萘磺酸荧光的变化表明细胞膜流动性发生了去极化变化。在实际应用中,LA 还在熟鸡肉食品模型系统中显示出抗菌潜力,1.25-5 克/升的 LA 可使鸡肉在 4°C 下的保质期延长 2 天。此外,它对熟鸡肉的 pH 值和色泽也没有不良影响,甚至还能减少脂质氧化。总之,LA 具有很好的抗菌性能,是一种适用于熟肉食品的防腐剂。
{"title":"Antibacterial Activity and Mechanism of Lauric Acid Against <i>Staphylococcus aureus</i> and Its Application in Infectious Cooked Chicken.","authors":"Liu Qingyan, Shi Susu, Liu Shuanglin, Xian Youhua, Yan Haiyang, Yuan Yuan","doi":"10.1089/fpd.2024.0063","DOIUrl":"10.1089/fpd.2024.0063","url":null,"abstract":"<p><p><i>Staphylococcus aureus</i> contamination and prevention has always been a major concern for food industry. This work investigated the antibacterial activity and mechanisms of lauric acid (LA) against <i>S. aureus</i>. Results revealed 156 μg/mL was the minimum inhibitory concentration (MIC) for LA and it retarded growth rate of <i>S. aureus</i>. The inhibitory effect was enhanced with LA concentration. After being treated with 2 MIC LA for 24 h, the number of <i>S. aureus</i> decreased by 3.56 log colony-forming unit (CFU)/mL. Scanning electron microscopy profiling revealed that LA resulted in altered morphology of <i>S. aureus</i> cells. In addition, propidium iodide staining of flow cytometry suggested that LA treatment disrupted the cell membrane integrity. Changes in 8-anilino-1-naphthalenesulfonic acid fluorescence indicated a depolarization change in cell membrane fluidity. For practical applications, LA also displayed an antimicrobial potential in cooked chicken food model system, with 1.25-5 g/L of LA prolonging shelf life by 2 days at 4°C. Moreover, it had no adverse effect on pH values, color in cooked chicken meat, and even reduced lipid oxidation. To sum up, LA has great antimicrobial properties and is a candidate preservative for cooked meat food.</p>","PeriodicalId":12333,"journal":{"name":"Foodborne pathogens and disease","volume":" ","pages":"766-773"},"PeriodicalIF":1.9,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142125264","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The Burkholderia gladioli pv. cocovenenans (B. cocovenenans) has been linked to fatal food poisoning cases, which could produce the deadly toxin of bongkrekic acid (BA). However, genomic characterization and toxin production pathways of B. cocovenenans strains remain elusive. This study aimed to explore the BA-producing ability associated with the evolution of the bon gene cluster and to analyze the intraspecies genomic diversity and phylogenetic relationships of B. gladioli based on the 17 genomes of B. cocovenenans strains isolated from Shenzhen City, China. Genome sequencing results suggested that the genome sizes of these B. cocovenenans strains were mostly approximately 8 Mb, with a GC content of approximately 68%. The evolutionary tree analysis of the whole-genome sequences showed that significant divergences and distinct cluster were exhibited among these B. cocovenenans strains. Comparative genomic analysis indicated that the genomes of strains 2020051, 2021031, and 2021067 contained the complete and entire bon gene cluster, supporting that these strains displayed obviously BA-producing ability. The genomes of strains 2021028 and 2020041 lacked the entire bon gene cluster. However, the genomes of strains 2021037, 2021024, 2021035, and 2021031 exhibited disruptions in their bon gene clusters. This finding indicated the loss of specific genes within the cluster, suggesting a reduced capability for BA production in these strains. The present results indicated that the bon gene cluster in the genome played a key role in the toxin BA biosynthesis of different B. cocovenenans strains. This study provided a comprehensive understanding of the relationship between genomic diversity and BA production of this lethal foodborne pathovar, which will potentially contribute to the risk identification and food poisoning outbreak prevention of B. cocovenenans.
{"title":"Genomic Characterization and Comparative Genomic Analysis of the Foodborne <i>Burkholderia gladioli</i> pv. <i>cocovenenans</i>.","authors":"Jing Chen, Xiaoqing Liu, Bin Liu, Qiongying Yan, Leshi Li, Jie Wang, Yanhui Wu, Chengrong Xiao, Guangzong Xie, Zeyu Lin, Xintian Lai, Jianfei Huang","doi":"10.1089/fpd.2024.0011","DOIUrl":"https://doi.org/10.1089/fpd.2024.0011","url":null,"abstract":"<p><p>The <i>Burkholderia gladioli</i> pv. <i>cocovenenans</i> (<i>B. cocovenenans</i>) has been linked to fatal food poisoning cases, which could produce the deadly toxin of bongkrekic acid (BA). However, genomic characterization and toxin production pathways of <i>B. cocovenenans</i> strains remain elusive. This study aimed to explore the BA-producing ability associated with the evolution of the <i>bon</i> gene cluster and to analyze the intraspecies genomic diversity and phylogenetic relationships of <i>B. gladioli</i> based on the 17 genomes of <i>B. cocovenenans</i> strains isolated from Shenzhen City, China. Genome sequencing results suggested that the genome sizes of these <i>B. cocovenenans</i> strains were mostly approximately 8 Mb, with a GC content of approximately 68%. The evolutionary tree analysis of the whole-genome sequences showed that significant divergences and distinct cluster were exhibited among these <i>B. cocovenenans</i> strains. Comparative genomic analysis indicated that the genomes of strains 2020051, 2021031, and 2021067 contained the complete and entire <i>bon</i> gene cluster, supporting that these strains displayed obviously BA-producing ability. The genomes of strains 2021028 and 2020041 lacked the entire <i>bon</i> gene cluster. However, the genomes of strains 2021037, 2021024, 2021035, and 2021031 exhibited disruptions in their <i>bon</i> gene clusters. This finding indicated the loss of specific genes within the cluster, suggesting a reduced capability for BA production in these strains. The present results indicated that the <i>bon</i> gene cluster in the genome played a key role in the toxin BA biosynthesis of different <i>B. cocovenenans</i> strains. This study provided a comprehensive understanding of the relationship between genomic diversity and BA production of this lethal foodborne pathovar, which will potentially contribute to the risk identification and food poisoning outbreak prevention of <i>B. cocovenenans</i>.</p>","PeriodicalId":12333,"journal":{"name":"Foodborne pathogens and disease","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2024-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142727330","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Staphylococcus aureus is one of the major causes of foodborne diseases and its presence in food products may poses a public health challenge. The aims of this study were to assess in vitro the capacity of S. aureus isolates from foods to form biofilm and to determine their antibiotic susceptibility. A total of 80 S. aureus isolates were characterized. The slime production ability was evaluated by congo-red agar (CRA) and the biofilm formation was carried out by microtiter-plate method (MPM). Resistance of isolates to eight antibiotics was determined using disc diffusion method. Sixty-four (80%) of the isolates were slime producers on congo-red agar. However, all isolates were biofilm producers on microtiter-plate method. The highest resistance profiles were ascribed to penicillin G (91.25%) and tetracycline (41.25%). Twelve isolates were methicillin-resistant (MRSA) harboring the mecA gene. All of these MRSA isolates were negative for the genes of the Panton Valentine leukocidine (lukF/S-PV). Typing of the MRSA isolates indicated that they belonged to three spa-types including t024, t450 and t688. The presence of biofilm producers and multidrug resistant isolates (MRSA) in food samples can represent a risk for public health. Therefore, an efficient control and effective measures were needed along the production chain to ensure the food safety.
{"title":"Investigation of Biofilm Formation Ability and Antibiotic Resistance of <i>Staphylococcus aureus</i> Isolates from Food Products.","authors":"Yacine Titouche, Madjid Akkou, Yasmina Djaoui, Achour Chergui, Donia Mechoub, Lamia Bentayeb, Abdelhak Fatihi, Yacine Nia, Jacques-Antoine Hennekinne","doi":"10.1089/fpd.2024.0121","DOIUrl":"10.1089/fpd.2024.0121","url":null,"abstract":"<p><p><i>Staphylococcus aureus</i> is one of the major causes of foodborne diseases and its presence in food products may poses a public health challenge. The aims of this study were to assess <i>in vitro</i> the capacity of <i>S. aureus</i> isolates from foods to form biofilm and to determine their antibiotic susceptibility. A total of 80 <i>S. aureus</i> isolates were characterized. The slime production ability was evaluated by congo-red agar (CRA) and the biofilm formation was carried out by microtiter-plate method (MPM). Resistance of isolates to eight antibiotics was determined using disc diffusion method. Sixty-four (80%) of the isolates were slime producers on congo-red agar. However, all isolates were biofilm producers on microtiter-plate method. The highest resistance profiles were ascribed to penicillin G (91.25%) and tetracycline (41.25%). Twelve isolates were methicillin-resistant (MRSA) harboring the <i>mecA</i> gene. All of these MRSA isolates were negative for the genes of the Panton Valentine leukocidine (<i>lukF/S</i>-PV). Typing of the MRSA isolates indicated that they belonged to three spa-types including t024, t450 and t688. The presence of biofilm producers and multidrug resistant isolates (MRSA) in food samples can represent a risk for public health. Therefore, an efficient control and effective measures were needed along the production chain to ensure the food safety.</p>","PeriodicalId":12333,"journal":{"name":"Foodborne pathogens and disease","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142715641","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
During the COVID-19 pandemic, nonpharmaceutical public health interventions (NPIs) were implemented worldwide to control the spread of severe acute respiratory syndrome coronavirus 2. However, the incidence of other pathogens, including gastrointestinal (GI) pathogens, was also affected. Here, we reviewed studies assessing the impact of NPIs during the COVID-19 pandemic on the incidence of GI infections, particularly foodborne infections. A systems literature search was conducted in May 2023, using Living Evidence on COVID-19 (COAP) and Scopus. Articles were identified and selected through a screening process with inclusion and exclusion criteria based on the Preferred Reporting Items for Systematic Reviews and Meta-Analysis statement. Data were extracted from each full-text article included in the review. Parameters included were GI viruses, GI bacteria, NPIs against the COVID-19 pandemic, and the associated impact of NPIs on GI pathogens. A total of 42 articles were included in the review, representing 18 countries. Overall, a larger reduction was observed for viral GI infections compared with bacterial GI infections during the COVID-19 pandemic, particularly for norovirus. For bacterial GI infections, Campylobacter and nontyphoidal Salmonella were the most frequently detected pathogens in the majority of the studies, with the largest reduction observed for Shigella and Shiga toxin-producing Escherichia coli infections. The sharp decrease in GI viral infections in most of the included countries is suggested to be related to the disruption of person-to-person transmission due to several implemented interventions (e.g., social distancing and hand hygiene). GI bacterial pathogens, more commonly transmitted via the foodborne route, were least impacted, and their reduction is associated with closure of food-providing settings and travel restrictions. However, the observed changes appear to be multifactorial; alterations in health-care-seeking behaviors and in routinary diagnostic testing have undeniably played a significant role, affecting national surveillance systems. Therefore, although NPIs likely had a substantial impact on the burden of GI infectious diseases, the extent of the true change cannot be fully assessed.
{"title":"Global Impact of COVID-19 Pandemic on Gastrointestinal Infections: A Scoping Review.","authors":"Afroditi Lazarakou, Lapo Mughini-Gras, Roan Pijnacker","doi":"10.1089/fpd.2024.0047","DOIUrl":"10.1089/fpd.2024.0047","url":null,"abstract":"<p><p>During the COVID-19 pandemic, nonpharmaceutical public health interventions (NPIs) were implemented worldwide to control the spread of severe acute respiratory syndrome coronavirus 2. However, the incidence of other pathogens, including gastrointestinal (GI) pathogens, was also affected. Here, we reviewed studies assessing the impact of NPIs during the COVID-19 pandemic on the incidence of GI infections, particularly foodborne infections. A systems literature search was conducted in May 2023, using Living Evidence on COVID-19 (COAP) and Scopus. Articles were identified and selected through a screening process with inclusion and exclusion criteria based on the Preferred Reporting Items for Systematic Reviews and Meta-Analysis statement. Data were extracted from each full-text article included in the review. Parameters included were GI viruses, GI bacteria, NPIs against the COVID-19 pandemic, and the associated impact of NPIs on GI pathogens. A total of 42 articles were included in the review, representing 18 countries. Overall, a larger reduction was observed for viral GI infections compared with bacterial GI infections during the COVID-19 pandemic, particularly for norovirus. For bacterial GI infections, <i>Campylobacter</i> and nontyphoidal <i>Salmonella</i> were the most frequently detected pathogens in the majority of the studies, with the largest reduction observed for <i>Shigella</i> and Shiga toxin-producing <i>Escherichia coli</i> infections. The sharp decrease in GI viral infections in most of the included countries is suggested to be related to the disruption of person-to-person transmission due to several implemented interventions (e.g., social distancing and hand hygiene). GI bacterial pathogens, more commonly transmitted via the foodborne route, were least impacted, and their reduction is associated with closure of food-providing settings and travel restrictions. However, the observed changes appear to be multifactorial; alterations in health-care-seeking behaviors and in routinary diagnostic testing have undeniably played a significant role, affecting national surveillance systems. Therefore, although NPIs likely had a substantial impact on the burden of GI infectious diseases, the extent of the true change cannot be fully assessed.</p>","PeriodicalId":12333,"journal":{"name":"Foodborne pathogens and disease","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142715637","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}