首页 > 最新文献

Frontiers in Bioengineering and Biotechnology最新文献

英文 中文
Corrigendum: Increasing the sensor channels: a solution for the pressing offsets that cause the physiological parameter inaccuracy in radial artery pulse signal acquisition. 更正:增加传感器通道:解决桡动脉脉搏信号采集中造成生理参数不准确的按压偏移问题。
IF 4.3 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-21 eCollection Date: 2024-01-01 DOI: 10.3389/fbioe.2024.1487592
Chao Chen, Zhendong Chen, Hongmiin Luo, Bo Peng, Yinan Hao, Xiaohua Xie, Haiqing Xie, Xinxin Li

[This corrects the article DOI: 10.3389/fbioe.2024.1359297.].

[此处更正了文章 DOI:10.3389/fbioe.2024.1359297]。
{"title":"Corrigendum: Increasing the sensor channels: a solution for the pressing offsets that cause the physiological parameter inaccuracy in radial artery pulse signal acquisition.","authors":"Chao Chen, Zhendong Chen, Hongmiin Luo, Bo Peng, Yinan Hao, Xiaohua Xie, Haiqing Xie, Xinxin Li","doi":"10.3389/fbioe.2024.1487592","DOIUrl":"https://doi.org/10.3389/fbioe.2024.1487592","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.3389/fbioe.2024.1359297.].</p>","PeriodicalId":12444,"journal":{"name":"Frontiers in Bioengineering and Biotechnology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11532588/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142575532","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A novel strain-based bone-fracture healing algorithm is able to predict a range of healing outcomes. 基于应变的新型骨骨折愈合算法能够预测一系列愈合结果。
IF 4.3 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-18 eCollection Date: 2024-01-01 DOI: 10.3389/fbioe.2024.1477405
George T Morgan, Lucas Low, Arul Ramasamy, Spyros D Masouros

Fracture healing is a complex process which sometimes results in non-unions, leading to prolonged disability and high morbidity. Traditional methods of optimising fracture treatments, such as in vitro benchtop testing and in vivo randomised controlled trials, face limitations, particularly in evaluating the entire healing process. This study introduces a novel, strain-based fracture-healing algorithm designed to predict a wide range of healing outcomes, including both successful unions and non-unions. The algorithm uses principal strains as mechanical stimuli to simulate fracture healing in response to local mechanical environments within the callus region. The model demonstrates good agreement with experimental data from ovine metatarsal osteotomies across six fracture cases with varying gap widths and inter-fragmentary strains, replicates physiological bony growth patterns, and is independent of the initial callus geometry. This computational approach provides a framework for developing new fracture-fixation devices, aid in pre-surgical planning, and optimise rehabilitation strategies.

骨折愈合是一个复杂的过程,有时会导致骨折不愈合,造成长期残疾和高发病率。优化骨折治疗的传统方法,如体外台架试验和体内随机对照试验,都面临着局限性,尤其是在评估整个愈合过程方面。本研究介绍了一种基于应变的新型骨折愈合算法,旨在预测各种愈合结果,包括成功接合和非接合。该算法使用主应变作为机械刺激,模拟骨折愈合对胼胝区内局部机械环境的响应。该模型与六种不同间隙宽度和片段间应变的绵羊跖骨截骨实验数据非常吻合,复制了生理骨生长模式,并且不受初始胼胝体几何形状的影响。这种计算方法为开发新的骨折固定装置提供了框架,有助于手术前规划和优化康复策略。
{"title":"A novel strain-based bone-fracture healing algorithm is able to predict a range of healing outcomes.","authors":"George T Morgan, Lucas Low, Arul Ramasamy, Spyros D Masouros","doi":"10.3389/fbioe.2024.1477405","DOIUrl":"10.3389/fbioe.2024.1477405","url":null,"abstract":"<p><p>Fracture healing is a complex process which sometimes results in non-unions, leading to prolonged disability and high morbidity. Traditional methods of optimising fracture treatments, such as <i>in vitro</i> benchtop testing and <i>in vivo</i> randomised controlled trials, face limitations, particularly in evaluating the entire healing process. This study introduces a novel, strain-based fracture-healing algorithm designed to predict a wide range of healing outcomes, including both successful unions and non-unions. The algorithm uses principal strains as mechanical stimuli to simulate fracture healing in response to local mechanical environments within the callus region. The model demonstrates good agreement with experimental data from ovine metatarsal osteotomies across six fracture cases with varying gap widths and inter-fragmentary strains, replicates physiological bony growth patterns, and is independent of the initial callus geometry. This computational approach provides a framework for developing new fracture-fixation devices, aid in pre-surgical planning, and optimise rehabilitation strategies.</p>","PeriodicalId":12444,"journal":{"name":"Frontiers in Bioengineering and Biotechnology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11527658/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142567945","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The effect of titanium surface treatment by application of constant potential or current on the viability of pre-osteoblast cells: an in-vitro study. 通过恒定电位或电流处理钛表面对前成骨细胞活力的影响:体外研究。
IF 4.3 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-18 eCollection Date: 2024-01-01 DOI: 10.3389/fbioe.2024.1425450
Wenji Cai, Min Wang, Amir Ei Hadad, Yuli Zhang, Simon D Tran, Samar Shurbaji, Gheyath K Nasrallah, Mariano Sanz, Sasha Omanovic, Faleh Tamimi

Objectives: The aim of this study was to investigate the impact of electrochemical treatment of a titanium surface employing constant current and potential on the viability of the tissue cells attached to the surface and determining the safety limits for this type of treatment.

Methods: Pre-osteoblast cells (pOB) were cultured and seeded onto titanium discs. The cell-seeded discs were then exposed to a range of contant direct electrical potentials (-6V-6V) or contant direct electrical currents (-12.5 mA, -25 mA, or -50 mA) using a three-electrode system connected to a potentiostat. Cell viability was assessed using live/dead assay and fluorescence microscopy.

Results: Exposure of cells to high negative potentials caused cell detachment, while exposure to positive ones led to cell death on the cpTi surfaces. However, cellular viability was preserved when the electrical potentials were kept between -3 and +3 V. Cells retained 80% viability when subjected to -12.5 mA currents with an initial pOB cell count of 5 × 104. However, when the initial cell count was elevated to 1 × 105, the cells demonstrated the ability to withstand an even greater current (-25 mA) while preserving their vitality at the same level.

Conclusion: Treatment of a titanium dental implant surface employing constant potential or current can harm cells surrounding dental implants. However, this damage can be minimized by keeping the potential within a safety limit.

研究目的本研究旨在探讨采用恒定电流和电位对钛表面进行电化学处理对附着在表面上的组织细胞活力的影响,并确定这种处理方式的安全限度:方法:培养前成骨细胞(pOB)并将其播种到钛圆片上。然后使用连接到恒电位仪的三电极系统,将细胞播种的圆盘暴露在一系列等效直接电位(-6V-6V)或等效直接电流(-12.5 mA、-25 mA 或 -50 mA)下。使用活/死检测法和荧光显微镜评估细胞活力:结果:细胞暴露在高负电位下会导致细胞脱落,而暴露在正电位下会导致 cpTi 表面的细胞死亡。然而,当电位保持在 -3 至 +3 V 之间时,细胞的存活率得以保持。在初始 pOB 细胞数为 5 × 104 时,当电流为 -12.5 mA 时,细胞的存活率保持在 80%。然而,当初始细胞数增加到 1 × 105 时,细胞表现出了承受更大电流(-25 mA)的能力,同时保持了相同水平的活力:结论:使用恒定电位或电流处理钛金属牙科种植体表面会对牙科种植体周围的细胞造成伤害。然而,通过将电位控制在安全范围内,可以将这种损害降至最低。
{"title":"The effect of titanium surface treatment by application of constant potential or current on the viability of pre-osteoblast cells: an <i>in-vitro</i> study.","authors":"Wenji Cai, Min Wang, Amir Ei Hadad, Yuli Zhang, Simon D Tran, Samar Shurbaji, Gheyath K Nasrallah, Mariano Sanz, Sasha Omanovic, Faleh Tamimi","doi":"10.3389/fbioe.2024.1425450","DOIUrl":"10.3389/fbioe.2024.1425450","url":null,"abstract":"<p><strong>Objectives: </strong>The aim of this study was to investigate the impact of electrochemical treatment of a titanium surface employing constant current and potential on the viability of the tissue cells attached to the surface and determining the safety limits for this type of treatment.</p><p><strong>Methods: </strong>Pre-osteoblast cells (pOB) were cultured and seeded onto titanium discs. The cell-seeded discs were then exposed to a range of contant direct electrical potentials (-6V-6V) or contant direct electrical currents (-12.5 mA, -25 mA, or -50 mA) using a three-electrode system connected to a potentiostat. Cell viability was assessed using live/dead assay and fluorescence microscopy.</p><p><strong>Results: </strong>Exposure of cells to high negative potentials caused cell detachment, while exposure to positive ones led to cell death on the cpTi surfaces. However, cellular viability was preserved when the electrical potentials were kept between -3 and +3 V. Cells retained 80% viability when subjected to -12.5 mA currents with an initial pOB cell count of 5 × 10<sup>4</sup>. However, when the initial cell count was elevated to 1 × 10<sup>5</sup>, the cells demonstrated the ability to withstand an even greater current (-25 mA) while preserving their vitality at the same level.</p><p><strong>Conclusion: </strong>Treatment of a titanium dental implant surface employing constant potential or current can harm cells surrounding dental implants. However, this damage can be minimized by keeping the potential within a safety limit.</p>","PeriodicalId":12444,"journal":{"name":"Frontiers in Bioengineering and Biotechnology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11527693/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142567954","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Extracellular vesicle mimetics as delivery vehicles for oligonucleotide-based therapeutics and plasmid DNA. 细胞外囊泡模拟物作为寡核苷酸治疗药物和质粒 DNA 的输送载体。
IF 4.3 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-17 eCollection Date: 2024-01-01 DOI: 10.3389/fbioe.2024.1437817
Anastasiya Oshchepkova, Ivan Chernikov, Svetlana Miroshnichenko, Olga Patutina, Oleg Markov, Innokenty Savin, Yaroslav Staroseletz, Mariya Meschaninova, Pavel Puchkov, Sergey Zhukov, Maxim Kupryushkin, Mikhail Maslov, Aleksandra Sen'kova, Valentin Vlassov, Elena Chernolovskaya, Marina Zenkova

Introduction: Small membrane particles called extracellular vesicles (EVs) transport biologically active cargo between cells, providing intercellular communication. The clinical application of EVs is limited due to the lack of scalable and cost-effective approaches for their production and purification, as well as effective loading strategies.

Methods: Here we used EV mimetics produced by cell treatment with the actin-destabilizing agent cytochalasin B as an alternative to EVs for the delivery of therapeutic nucleic acids.

Results: Cytochalasin-B-inducible nanovesicles (CINVs) delivered a fully modified N-(methanesulfonyl)- or mesyl (µ-) antisense oligonucleotide to B16 melanoma cells, selectively decreasing the level of target microRNA-21 with effectiveness comparable to that observed upon Lipofectamine 2000-mediated delivery. The efficiency of the CINV-mediated delivery of plasmid DNA encoding EGFP varied depending on the type of recipient cells. Surprisingly, under experimental conditions, CINVs were unable to deliver both modified and natural short RNA duplexes-small interfering RNA and immunostimulatory RNA-probably due to their poor loading into CINVs.

Discussion: CINVs demonstrated unique properties for the delivery of therapeutic nucleic acids, especially for antisense oligonucleotide-based therapy.

简介被称为细胞外囊泡(EVs)的小膜颗粒在细胞间运输具有生物活性的货物,提供细胞间的交流。方法:在这里,我们使用细胞经肌动蛋白稳定剂细胞松弛素 B 处理后产生的模拟 EV,作为 EV 的替代品来递送治疗性核酸:结果:细胞松弛素B诱导的纳米颗粒(CINVs)将完全修饰的N-(甲磺酰基)-或甲磺酰基(µ-)反义寡核苷酸递送到B16黑色素瘤细胞,选择性地降低了靶microRNA-21的水平,其效果与Lipofectamine 2000介导的递送效果相当。CINV 介导的编码 EGFP 的质粒 DNA 的递送效率因受体细胞类型而异。令人惊讶的是,在实验条件下,CINVs 无法递送修饰的和天然的短 RNA 双链体--小干扰 RNA 和免疫刺激 RNA--这可能是由于它们在 CINVs 中的负载能力较差:讨论:CINVs 在递送治疗性核酸,尤其是基于反义寡核苷酸的治疗方面表现出独特的特性。
{"title":"Extracellular vesicle mimetics as delivery vehicles for oligonucleotide-based therapeutics and plasmid DNA.","authors":"Anastasiya Oshchepkova, Ivan Chernikov, Svetlana Miroshnichenko, Olga Patutina, Oleg Markov, Innokenty Savin, Yaroslav Staroseletz, Mariya Meschaninova, Pavel Puchkov, Sergey Zhukov, Maxim Kupryushkin, Mikhail Maslov, Aleksandra Sen'kova, Valentin Vlassov, Elena Chernolovskaya, Marina Zenkova","doi":"10.3389/fbioe.2024.1437817","DOIUrl":"10.3389/fbioe.2024.1437817","url":null,"abstract":"<p><strong>Introduction: </strong>Small membrane particles called extracellular vesicles (EVs) transport biologically active cargo between cells, providing intercellular communication. The clinical application of EVs is limited due to the lack of scalable and cost-effective approaches for their production and purification, as well as effective loading strategies.</p><p><strong>Methods: </strong>Here we used EV mimetics produced by cell treatment with the actin-destabilizing agent cytochalasin B as an alternative to EVs for the delivery of therapeutic nucleic acids.</p><p><strong>Results: </strong>Cytochalasin-B-inducible nanovesicles (CINVs) delivered a fully modified N-(methanesulfonyl)- or mesyl (µ-) antisense oligonucleotide to B16 melanoma cells, selectively decreasing the level of target microRNA-21 with effectiveness comparable to that observed upon Lipofectamine 2000-mediated delivery. The efficiency of the CINV-mediated delivery of plasmid DNA encoding EGFP varied depending on the type of recipient cells. Surprisingly, under experimental conditions, CINVs were unable to deliver both modified and natural short RNA duplexes-small interfering RNA and immunostimulatory RNA-probably due to their poor loading into CINVs.</p><p><strong>Discussion: </strong>CINVs demonstrated unique properties for the delivery of therapeutic nucleic acids, especially for antisense oligonucleotide-based therapy.</p>","PeriodicalId":12444,"journal":{"name":"Frontiers in Bioengineering and Biotechnology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11528538/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142567949","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Establishing a national biosafety and biosecurity agency for the United States. 建立美国国家生物安全和生物安保机构。
IF 4.3 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-17 eCollection Date: 2024-01-01 DOI: 10.3389/fbioe.2024.1474120
David R Gillum, Rebecca Moritz, Gregory D Koblentz

The rapid advancement of biological research and biotechnology requires a novel and robust regulatory agency to ensure uniform biosafety and biosecurity governance in the United States. The current fragmented regulatory landscape needs to be refocused to address the complexities of modern biological research, including risks associated with accidental, inadvertent, and deliberate biological incidents. An independent government agency, which we call the National Biosafety and Biosecurity Agency (NBBA), that is devoted to biosafety and biosecurity could effectively address these challenges. The NBBA would consolidate various regulatory functions, streamline processes, and enhance oversight. This oversight would encompass life sciences research in the United States, regardless of the source of funding or level of classification. The agency could also contribute to the bioeconomy by streamlining requirements to safeguard public health and the environment while fostering scientific and commercial progress. The proposed agency would govern high-risk biological pathogens, manage the Federal Select Agent Program, enforce policies related to dual use research of concern, pathogens with enhanced pandemic potential, and nucleic acid synthesis screening, administer regulations on the use and care of laboratory animals, as well as regulate other relevant biosafety and biosecurity activities. The goal would be to provide one-stop shopping for the biomedical research and biotechnology sectors subject to oversight by the Federal government. To ensure leadership in global biosafety and biosecurity, the agency's mission would include international collaboration, applied research, education, workforce development, and coordination with national security initiatives. Creating an agency like the NBBA will be politically challenging but presenting a comprehensive vision and engaging stakeholders early and frequently, and being transparent in the process, will be essential for garnering support. Creating a unified biosafety and biosecurity governance system in the United States will ensure the safe and secure advancement of biological research while sustaining innovation and maintaining international competitiveness.

生物研究和生物技术的飞速发展需要一个新颖而强有力的监管机构,以确保美国统一的生物安全和生物安保管理。目前分散的监管格局需要重新聚焦,以应对现代生物研究的复杂性,包括与意外、疏忽和蓄意生物事故相关的风险。我们称之为 "国家生物安全和生物安保局"(NBBA)的独立政府机构将专门负责生物安全和生物安保工作,可以有效地应对这些挑战。国家生物安全与生物安保局将整合各种监管职能、简化流程并加强监督。这种监督将涵盖美国的生命科学研究,无论其资金来源或分类级别如何。该机构还可以通过简化要求来保护公众健康和环境,同时促进科学和商业进步,从而推动生物经济的发展。拟成立的机构将负责管理高风险生物病原体,管理联邦选择制剂计划,执行有关双重用途研究、具有更大流行潜力的病原体和核酸合成筛选的政策,管理实验动物的使用和护理条例,以及监管其他相关的生物安全和生物安保活动。其目标是为受联邦政府监督的生物医学研究和生物技术部门提供一站式服务。为确保在全球生物安全和生物安保领域的领导地位,该机构的任务将包括国际合作、应用研究、教育、劳动力发展以及与国家安全倡议的协调。建立一个像国家生物安全与生物安保局这样的机构在政治上具有挑战性,但提出一个全面的愿景,让利益相关者尽早、经常地参与进来,并在过程中保持透明,对于赢得支持至关重要。在美国建立统一的生物安全和生物安保管理体系将确保生物研究安全可靠地向前发展,同时保持创新和国际竞争力。
{"title":"Establishing a national biosafety and biosecurity agency for the United States.","authors":"David R Gillum, Rebecca Moritz, Gregory D Koblentz","doi":"10.3389/fbioe.2024.1474120","DOIUrl":"10.3389/fbioe.2024.1474120","url":null,"abstract":"<p><p>The rapid advancement of biological research and biotechnology requires a novel and robust regulatory agency to ensure uniform biosafety and biosecurity governance in the United States. The current fragmented regulatory landscape needs to be refocused to address the complexities of modern biological research, including risks associated with accidental, inadvertent, and deliberate biological incidents. An independent government agency, which we call the National Biosafety and Biosecurity Agency (NBBA), that is devoted to biosafety and biosecurity could effectively address these challenges. The NBBA would consolidate various regulatory functions, streamline processes, and enhance oversight. This oversight would encompass life sciences research in the United States, regardless of the source of funding or level of classification. The agency could also contribute to the bioeconomy by streamlining requirements to safeguard public health and the environment while fostering scientific and commercial progress. The proposed agency would govern high-risk biological pathogens, manage the Federal Select Agent Program, enforce policies related to dual use research of concern, pathogens with enhanced pandemic potential, and nucleic acid synthesis screening, administer regulations on the use and care of laboratory animals, as well as regulate other relevant biosafety and biosecurity activities. The goal would be to provide one-stop shopping for the biomedical research and biotechnology sectors subject to oversight by the Federal government. To ensure leadership in global biosafety and biosecurity, the agency's mission would include international collaboration, applied research, education, workforce development, and coordination with national security initiatives. Creating an agency like the NBBA will be politically challenging but presenting a comprehensive vision and engaging stakeholders early and frequently, and being transparent in the process, will be essential for garnering support. Creating a unified biosafety and biosecurity governance system in the United States will ensure the safe and secure advancement of biological research while sustaining innovation and maintaining international competitiveness.</p>","PeriodicalId":12444,"journal":{"name":"Frontiers in Bioengineering and Biotechnology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11524925/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142557544","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
FixThePig: a custom 3D-printed femoral intramedullary nailing for preclinical research applications. FixThePig:用于临床前研究应用的定制 3D 打印股骨髓内钉。
IF 4.3 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-17 eCollection Date: 2024-01-01 DOI: 10.3389/fbioe.2024.1478676
Julie Manon, Alexandre Englebert, Robin Evrard, Thomas Schubert, Olivier Cornu

Background: Critical-size bone defects (CSBDs) pose significant challenges in clinical orthopaedics and traumatology. Developing reliable preclinical models that accurately simulate human conditions is crucial for translational research. This study addresses the need for a reliable preclinical model by evaluating the design and efficacy of a custom-made 3D-printed intramedullary nail (IMN) specifically for CSBDs in minipigs. The study aims to answer the following questions: Can a custom-made 3D-printed IMN be designed for femoral osteosynthesis in minipigs? Does the use of the custom-made IMN result in consistent and reproducible surgical procedure, particularly in the creation and fixation of CSBDs? Can the custom-made IMN effectively treat and promote bone consolidation of CSBDs?

Hypothesis: The custom-made 3D-printed IMN can be designed to effectively create, fix and treat CSBDs in minipigs, resulting in consistent surgical outcomes.

Materials and methods: The IMN was designed based on CT scans of minipig femurs, considering factors such as femoral curvature, length, and medullary canal diameters. It was 3D-printed in titanium and evaluated through both in vitro and in vivo testing. Female Aachen minipigs underwent bilateral femoral surgeries to create and fix CSBDs using the custom-made IMN. Post-operative follow-up included X-rays and CT scans every 2 weeks, with manual examination of explanted femurs to assess consolidation and mechanical stability after 3 months.

Results: The custom-made IMN effectively fitted the minipig femoral anatomy and facilitated reproducible surgical outcomes. Symmetric double osteotomies were successfully performed, and allografts showed minimal morphological discrepancies. However, proximal fixation faced challenges, leading to non-union in several cases, while most distal osteotomy sites achieved stable consolidation.

Discussion: The custom-made 3D-printed IMN demonstrated potential in modelling and treating CSBDs in minipigs. While the design effectively supported distal bone healing, issues with proximal fixation highlight the need for further refinements. Potential improvements include better screw placement, additional mechanical support, and adaptations such as a reduction clamp or a cephalic screw to enhance stability and distribute forces more effectively.

背景:临界尺寸骨缺损(CSBD)给临床骨科和创伤学带来了巨大挑战。开发能准确模拟人体状况的可靠临床前模型对转化研究至关重要。本研究通过评估专为迷你猪 CSBD 定制的 3D 打印髓内钉(IMN)的设计和功效,满足了对可靠临床前模型的需求。该研究旨在回答以下问题:能否设计一种定制的三维打印髓内钉用于迷你猪的股骨骨合成?使用定制的 IMN 是否能实现一致且可重复的手术过程,尤其是在 CSBD 的创建和固定方面?定制的 IMN 能否有效治疗和促进 CSBD 的骨整合?定制的三维打印 IMN 可用于有效地创建、固定和治疗迷你猪 CSBD,从而获得一致的手术效果:根据迷你猪股骨的 CT 扫描结果设计 IMN,其中考虑了股骨弧度、长度和髓管直径等因素。它由钛金属三维打印而成,并通过体外和体内测试进行评估。雌性亚琛小猪接受了双侧股骨手术,使用定制的 IMN 创建和固定 CSBD。术后随访包括每两周进行一次 X 射线和 CT 扫描,并在 3 个月后对取出的股骨进行人工检查,以评估巩固情况和机械稳定性:结果:定制的IMN有效地适应了迷你猪股骨解剖结构,并促进了手术结果的可重复性。对称双截骨手术成功实施,异体移植物的形态差异极小。然而,近端固定面临挑战,导致多个病例出现不愈合,而大多数远端截骨部位实现了稳定的巩固:讨论:定制的三维打印 IMN 在迷你猪 CSBD 的建模和治疗中表现出了潜力。虽然该设计能有效支持远端骨愈合,但近端固定方面的问题凸显了进一步改进的必要性。潜在的改进措施包括更好的螺钉位置、额外的机械支持以及适应性调整,例如使用减张夹或头螺钉来增强稳定性并更有效地分散力量。
{"title":"FixThePig: a custom 3D-printed femoral intramedullary nailing for preclinical research applications.","authors":"Julie Manon, Alexandre Englebert, Robin Evrard, Thomas Schubert, Olivier Cornu","doi":"10.3389/fbioe.2024.1478676","DOIUrl":"10.3389/fbioe.2024.1478676","url":null,"abstract":"<p><strong>Background: </strong>Critical-size bone defects (CSBDs) pose significant challenges in clinical orthopaedics and traumatology. Developing reliable preclinical models that accurately simulate human conditions is crucial for translational research. This study addresses the need for a reliable preclinical model by evaluating the design and efficacy of a custom-made 3D-printed intramedullary nail (IMN) specifically for CSBDs in minipigs. The study aims to answer the following questions: Can a custom-made 3D-printed IMN be designed for femoral osteosynthesis in minipigs? Does the use of the custom-made IMN result in consistent and reproducible surgical procedure, particularly in the creation and fixation of CSBDs? Can the custom-made IMN effectively treat and promote bone consolidation of CSBDs?</p><p><strong>Hypothesis: </strong>The custom-made 3D-printed IMN can be designed to effectively create, fix and treat CSBDs in minipigs, resulting in consistent surgical outcomes.</p><p><strong>Materials and methods: </strong>The IMN was designed based on CT scans of minipig femurs, considering factors such as femoral curvature, length, and medullary canal diameters. It was 3D-printed in titanium and evaluated through both <i>in vitro</i> and <i>in vivo</i> testing. Female Aachen minipigs underwent bilateral femoral surgeries to create and fix CSBDs using the custom-made IMN. Post-operative follow-up included X-rays and CT scans every 2 weeks, with manual examination of explanted femurs to assess consolidation and mechanical stability after 3 months.</p><p><strong>Results: </strong>The custom-made IMN effectively fitted the minipig femoral anatomy and facilitated reproducible surgical outcomes. Symmetric double osteotomies were successfully performed, and allografts showed minimal morphological discrepancies. However, proximal fixation faced challenges, leading to non-union in several cases, while most distal osteotomy sites achieved stable consolidation.</p><p><strong>Discussion: </strong>The custom-made 3D-printed IMN demonstrated potential in modelling and treating CSBDs in minipigs. While the design effectively supported distal bone healing, issues with proximal fixation highlight the need for further refinements. Potential improvements include better screw placement, additional mechanical support, and adaptations such as a reduction clamp or a cephalic screw to enhance stability and distribute forces more effectively.</p>","PeriodicalId":12444,"journal":{"name":"Frontiers in Bioengineering and Biotechnology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11528544/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142567951","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Current advances in the development of microRNA-integrated tissue engineering strategies: a cornerstone of regenerative medicine. 微小核糖核酸整合组织工程策略的最新进展:再生医学的基石。
IF 4.3 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-16 eCollection Date: 2024-01-01 DOI: 10.3389/fbioe.2024.1484151
Luis Germán Castañón-Cortés, Luis Alberto Bravo-Vázquez, Grecia Santoyo-Valencia, Sara Medina-Feria, Padmavati Sahare, Asim K Duttaroy, Sujay Paul

Regenerative medicine is an innovative scientific field focused on repairing, replacing, or regenerating damaged tissues and organs to restore their normal functions. A central aspect of this research arena relies on the use of tissue-engineered scaffolds, which serve as structural supports that mimic the extracellular matrix, providing an environment that orchestrates cell growth and tissue formation. Remarkably, the therapeutic efficacy of these scaffolds can be improved by harnessing the properties of other molecules or compounds that have crucial roles in healing and regeneration pathways, such as phytochemicals, enzymes, transcription factors, and non-coding RNAs (ncRNAs). In particular, microRNAs (miRNAs) are a class of tiny (20-24 nt), highly conserved ncRNAs that play a critical role in the regulation of gene expression at the post-transcriptional level. Accordingly, miRNAs are involved in a myriad of biological processes, including cell differentiation, proliferation, and apoptosis, as well as tissue regeneration, angiogenesis, and osteogenesis. On this basis, over the past years, a number of research studies have demonstrated that miRNAs can be integrated into tissue-engineered scaffolds to create advanced therapeutic platforms that precisely modulate cellular behavior and offer a controlled and targeted release of miRNAs to optimize tissue repair and regeneration. Therefore, in this current review, we discuss the most recent advances in the development of miRNA-loaded tissue-engineered scaffolds and provide an overview of the future outlooks that should be aborded in this area of study in order to lay the groundwork for the clinical translation of these tissue engineering approaches.

再生医学是一个创新的科学领域,其重点是修复、替换或再生受损组织和器官,以恢复其正常功能。这一研究领域的一个核心环节是使用组织工程支架,这种支架作为结构支撑,可模仿细胞外基质,提供协调细胞生长和组织形成的环境。值得注意的是,这些支架的治疗效果可以通过利用在愈合和再生途径中起关键作用的其他分子或化合物(如植物化学物质、酶、转录因子和非编码 RNA(ncRNA))的特性得到改善。其中,微小核糖核酸(miRNA)是一类微小(20-24 nt)、高度保守的非编码核糖核酸(ncRNA),在转录后水平的基因表达调控中发挥着关键作用。因此,miRNAs 参与了无数生物过程,包括细胞分化、增殖和凋亡,以及组织再生、血管生成和骨生成。在此基础上,过去几年中,许多研究表明,miRNAs 可被整合到组织工程支架中,从而创建先进的治疗平台,精确调节细胞行为,并提供可控的、有针对性的 miRNAs 释放,以优化组织修复和再生。因此,在本综述中,我们将讨论在开发 miRNA 负载组织工程支架方面的最新进展,并概述这一研究领域的未来展望,以便为这些组织工程方法的临床转化奠定基础。
{"title":"Current advances in the development of microRNA-integrated tissue engineering strategies: a cornerstone of regenerative medicine.","authors":"Luis Germán Castañón-Cortés, Luis Alberto Bravo-Vázquez, Grecia Santoyo-Valencia, Sara Medina-Feria, Padmavati Sahare, Asim K Duttaroy, Sujay Paul","doi":"10.3389/fbioe.2024.1484151","DOIUrl":"10.3389/fbioe.2024.1484151","url":null,"abstract":"<p><p>Regenerative medicine is an innovative scientific field focused on repairing, replacing, or regenerating damaged tissues and organs to restore their normal functions. A central aspect of this research arena relies on the use of tissue-engineered scaffolds, which serve as structural supports that mimic the extracellular matrix, providing an environment that orchestrates cell growth and tissue formation. Remarkably, the therapeutic efficacy of these scaffolds can be improved by harnessing the properties of other molecules or compounds that have crucial roles in healing and regeneration pathways, such as phytochemicals, enzymes, transcription factors, and non-coding RNAs (ncRNAs). In particular, microRNAs (miRNAs) are a class of tiny (20-24 nt), highly conserved ncRNAs that play a critical role in the regulation of gene expression at the post-transcriptional level. Accordingly, miRNAs are involved in a myriad of biological processes, including cell differentiation, proliferation, and apoptosis, as well as tissue regeneration, angiogenesis, and osteogenesis. On this basis, over the past years, a number of research studies have demonstrated that miRNAs can be integrated into tissue-engineered scaffolds to create advanced therapeutic platforms that precisely modulate cellular behavior and offer a controlled and targeted release of miRNAs to optimize tissue repair and regeneration. Therefore, in this current review, we discuss the most recent advances in the development of miRNA-loaded tissue-engineered scaffolds and provide an overview of the future outlooks that should be aborded in this area of study in order to lay the groundwork for the clinical translation of these tissue engineering approaches.</p>","PeriodicalId":12444,"journal":{"name":"Frontiers in Bioengineering and Biotechnology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11521876/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142544695","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effective and new technologies in kidney tissue engineering. 肾脏组织工程的有效技术和新技术。
IF 4.3 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-16 eCollection Date: 2024-01-01 DOI: 10.3389/fbioe.2024.1476510
Hossein Rayat Pisheh, Mobin Haghdel, Mahboube Jahangir, Monireh Sadat Hoseinian, Shaghayegh Rostami Yasuj, Ali Sarhadi Roodbari

Kidney disease encompasses a wide spectrum of conditions, ranging from simple infections to chronic kidney disease. When the kidneys are unable to filter blood and remove waste products, these abnormalities can lead to kidney failure. In severe cases of kidney failure, kidney transplantation is considered the only definitive treatment. Worldwide, the World Health Organization (WHO) repeatedly emphasizes the importance of organ donation and increasing transplantation rates. Many countries implement national programs to promote the culture of organ donation and improve patient access to kidney transplantation. The extent to which this procedure is performed varies across countries and is influenced by several factors, including the volume of organ donation, medical infrastructure, access to technology and health policies. However, a kidney transplant comes with challenges and problems that impact its success. Kidney tissue engineering is a new approach that shows promise for repairing and replacing damaged kidney tissue. This article reviews recent advances in kidney tissue engineering, focusing on engineered structures such as hydrogels, electrospinning, 3D bioprinting, and microfluidic systems. By mimicking the extracellular environment of the kidney, these structures provide suitable conditions for the growth and development of kidney cells. The role of these structures in the formation of blood vessels, the mimicry of kidney functions and the challenges in this field were also discussed. The results of this study show that kidney tissue engineering has high potential for treating kidney diseases and reducing the need for kidney transplantation. However, to achieve clinical application of this technology, further research is required to improve the biocompatibility, vascularization and long-term performance of engineered tissues.

肾脏疾病包括多种病症,从简单的感染到慢性肾病,不一而足。当肾脏无法过滤血液和清除废物时,这些异常现象就会导致肾衰竭。在肾衰竭的严重病例中,肾移植被认为是唯一确切的治疗方法。在世界范围内,世界卫生组织(WHO)反复强调器官捐赠和提高移植率的重要性。许多国家实施了国家计划,以促进器官捐献文化,改善患者接受肾移植的机会。各国实施这一程序的程度不尽相同,并受到多种因素的影响,包括器官捐献数量、医疗基础设施、技术获取途径和卫生政策。然而,肾移植也会遇到影响其成功的挑战和问题。肾脏组织工程是一种新方法,有望修复和替代受损的肾脏组织。本文回顾了肾脏组织工程的最新进展,重点介绍了水凝胶、电纺丝、三维生物打印和微流体系统等工程结构。通过模拟肾脏的细胞外环境,这些结构为肾脏细胞的生长和发育提供了合适的条件。研究还讨论了这些结构在血管形成中的作用、肾脏功能的模拟以及该领域面临的挑战。研究结果表明,肾脏组织工程在治疗肾脏疾病和减少肾脏移植需求方面具有很大潜力。然而,要实现这项技术的临床应用,还需要进一步的研究来改善工程组织的生物相容性、血管化和长期性能。
{"title":"Effective and new technologies in kidney tissue engineering.","authors":"Hossein Rayat Pisheh, Mobin Haghdel, Mahboube Jahangir, Monireh Sadat Hoseinian, Shaghayegh Rostami Yasuj, Ali Sarhadi Roodbari","doi":"10.3389/fbioe.2024.1476510","DOIUrl":"10.3389/fbioe.2024.1476510","url":null,"abstract":"<p><p>Kidney disease encompasses a wide spectrum of conditions, ranging from simple infections to chronic kidney disease. When the kidneys are unable to filter blood and remove waste products, these abnormalities can lead to kidney failure. In severe cases of kidney failure, kidney transplantation is considered the only definitive treatment. Worldwide, the World Health Organization (WHO) repeatedly emphasizes the importance of organ donation and increasing transplantation rates. Many countries implement national programs to promote the culture of organ donation and improve patient access to kidney transplantation. The extent to which this procedure is performed varies across countries and is influenced by several factors, including the volume of organ donation, medical infrastructure, access to technology and health policies. However, a kidney transplant comes with challenges and problems that impact its success. Kidney tissue engineering is a new approach that shows promise for repairing and replacing damaged kidney tissue. This article reviews recent advances in kidney tissue engineering, focusing on engineered structures such as hydrogels, electrospinning, 3D bioprinting, and microfluidic systems. By mimicking the extracellular environment of the kidney, these structures provide suitable conditions for the growth and development of kidney cells. The role of these structures in the formation of blood vessels, the mimicry of kidney functions and the challenges in this field were also discussed. The results of this study show that kidney tissue engineering has high potential for treating kidney diseases and reducing the need for kidney transplantation. However, to achieve clinical application of this technology, further research is required to improve the biocompatibility, vascularization and long-term performance of engineered tissues.</p>","PeriodicalId":12444,"journal":{"name":"Frontiers in Bioengineering and Biotechnology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11521926/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142544700","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CRISPR-Cas systems and applications for crop bioengineering. CRISPR-Cas 系统及其在作物生物工程中的应用。
IF 4.3 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-16 eCollection Date: 2024-01-01 DOI: 10.3389/fbioe.2024.1483857
Mireia Uranga, Ana Montserrat Martín-Hernández, Nico De Storme, Fabio Pasin

CRISPR-Cas technologies contribute to enhancing our understanding of plant gene functions, and to the precise breeding of crop traits. Here, we review the latest progress in plant genome editing, focusing on emerging CRISPR-Cas systems, DNA-free delivery methods, and advanced editing approaches. By illustrating CRISPR-Cas applications for improving crop performance and food quality, we highlight the potential of genome-edited crops to contribute to sustainable agriculture and food security.

CRISPR-Cas 技术有助于加深我们对植物基因功能的了解,也有助于作物性状的精确育种。在此,我们回顾了植物基因组编辑的最新进展,重点介绍了新兴的 CRISPR-Cas 系统、无 DNA 传输方法和先进的编辑方法。通过说明 CRISPR-Cas 在改善作物性能和食品质量方面的应用,我们强调了基因组编辑作物在促进可持续农业和粮食安全方面的潜力。
{"title":"CRISPR-Cas systems and applications for crop bioengineering.","authors":"Mireia Uranga, Ana Montserrat Martín-Hernández, Nico De Storme, Fabio Pasin","doi":"10.3389/fbioe.2024.1483857","DOIUrl":"10.3389/fbioe.2024.1483857","url":null,"abstract":"<p><p>CRISPR-Cas technologies contribute to enhancing our understanding of plant gene functions, and to the precise breeding of crop traits. Here, we review the latest progress in plant genome editing, focusing on emerging CRISPR-Cas systems, DNA-free delivery methods, and advanced editing approaches. By illustrating CRISPR-Cas applications for improving crop performance and food quality, we highlight the potential of genome-edited crops to contribute to sustainable agriculture and food security.</p>","PeriodicalId":12444,"journal":{"name":"Frontiers in Bioengineering and Biotechnology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11521923/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142550052","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CRISPR-Cas9/Cas12a systems for efficient genome editing and large genomic fragment deletions in Aspergillus niger. 用于黑曲霉高效基因组编辑和大基因组片段缺失的 CRISPR-Cas9/Cas12a 系统。
IF 4.3 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-16 eCollection Date: 2024-01-01 DOI: 10.3389/fbioe.2024.1452496
Guoliang Yuan, Shuang Deng, Jeffrey J Czajka, Ziyu Dai, Beth A Hofstad, Joonhoon Kim, Kyle R Pomraning

CRISPR technology has revolutionized fungal genetic engineering by accelerating the pace and expanding the feasible scope of experiments in this field. Among various CRISPR-Cas systems, Cas9 and Cas12a are widely used in genetic and metabolic engineering. In filamentous fungi, both Cas9 and Cas12a have been utilized as CRISPR nucleases. In this work we first compared efficacies and types of genetic edits for CRISPR-Cas9 and -Cas12a systems at the polyketide synthase (albA) gene locus in Aspergillus niger. By employing a tRNA-based gRNA polycistronic cassette, both Cas9 and Cas12a have demonstrated equally remarkable editing efficacy. Cas12a showed potential superiority over Cas9 protein when one gRNA was used for targeting, achieving an editing efficiency of 86.5% compared to 31.7% for Cas9. Moreover, when employing two gRNAs for targeting, both systems achieved up to 100% editing efficiency for single gene editing. In addition, the CRISPR-Cas9 system has been reported to induce large genomic deletions in various species. However, its use for engineering large chromosomal segments deletions in filamentous fungi still requires optimization. Here, we engineered Cas9 and -Cas12a-induced large genomic fragment deletions by targeting various genomic regions of A. niger ranging from 3.5 kb to 40 kb. Our findings demonstrate that targeted engineering of large chromosomal segments can be achieved, with deletions of up to 69.1% efficiency. Furthermore, by targeting a secondary metabolite gene cluster, we show that fragments over 100 kb can be efficiently and specifically deleted using the CRISPR-Cas9 or -Cas12a system. Overall, in this paper, we present an efficient multi-gRNA genome editing system utilizing Cas9 or Cas12a that enables highly efficient targeted editing of genes and large chromosomal regions in A. niger.

CRISPR 技术彻底改变了真菌基因工程,加快了这一领域实验的步伐,扩大了实验的可行范围。在各种 CRISPR-Cas 系统中,Cas9 和 Cas12a 被广泛应用于遗传和代谢工程。在丝状真菌中,Cas9和Cas12a都被用作CRISPR核酸酶。在这项工作中,我们首先比较了CRISPR-Cas9和-Cas12a系统在黑曲霉多酮合成酶(albA)基因座上进行基因编辑的效率和类型。通过使用基于 tRNA 的 gRNA 多核苷酸盒,Cas9 和 Cas12a 都表现出了同样显著的编辑功效。当使用一个gRNA作为靶向时,Cas12a显示出了比Cas9蛋白更高的潜在优势,其编辑效率达到86.5%,而Cas9的编辑效率仅为31.7%。此外,当使用两个 gRNA 进行靶向时,两个系统的单基因编辑效率都高达 100%。此外,据报道,CRISPR-Cas9 系统可在不同物种中诱导大的基因组缺失。然而,将其用于丝状真菌中的大染色体片段缺失工程仍需优化。在这里,我们以黑僵菌的不同基因组区域为目标,设计了 Cas9 和 -Cas12a 诱导的大基因组片段缺失,范围从 3.5 kb 到 40 kb。我们的研究结果表明,大染色体片段的靶向工程是可以实现的,其缺失效率高达 69.1%。此外,通过靶向次生代谢物基因簇,我们发现使用 CRISPR-Cas9 或 -Cas12a 系统可以高效、特异地删除超过 100 kb 的片段。总之,在本文中,我们介绍了一种利用 Cas9 或 Cas12a 的高效多 gRNA 基因组编辑系统,该系统能对黑僵菌的基因和大染色体区域进行高效的靶向编辑。
{"title":"CRISPR-Cas9/Cas12a systems for efficient genome editing and large genomic fragment deletions in <i>Aspergillus niger</i>.","authors":"Guoliang Yuan, Shuang Deng, Jeffrey J Czajka, Ziyu Dai, Beth A Hofstad, Joonhoon Kim, Kyle R Pomraning","doi":"10.3389/fbioe.2024.1452496","DOIUrl":"10.3389/fbioe.2024.1452496","url":null,"abstract":"<p><p>CRISPR technology has revolutionized fungal genetic engineering by accelerating the pace and expanding the feasible scope of experiments in this field. Among various CRISPR-Cas systems, Cas9 and Cas12a are widely used in genetic and metabolic engineering. In filamentous fungi, both Cas9 and Cas12a have been utilized as CRISPR nucleases. In this work we first compared efficacies and types of genetic edits for CRISPR-Cas9 and -Cas12a systems at the polyketide synthase (<i>albA</i>) gene locus in <i>Aspergillus niger</i>. By employing a tRNA-based gRNA polycistronic cassette, both Cas9 and Cas12a have demonstrated equally remarkable editing efficacy. Cas12a showed potential superiority over Cas9 protein when one gRNA was used for targeting, achieving an editing efficiency of 86.5% compared to 31.7% for Cas9. Moreover, when employing two gRNAs for targeting, both systems achieved up to 100% editing efficiency for single gene editing. In addition, the CRISPR-Cas9 system has been reported to induce large genomic deletions in various species. However, its use for engineering large chromosomal segments deletions in filamentous fungi still requires optimization. Here, we engineered Cas9 and -Cas12a-induced large genomic fragment deletions by targeting various genomic regions of <i>A</i>. <i>niger</i> ranging from 3.5 kb to 40 kb. Our findings demonstrate that targeted engineering of large chromosomal segments can be achieved, with deletions of up to 69.1% efficiency. Furthermore, by targeting a secondary metabolite gene cluster, we show that fragments over 100 kb can be efficiently and specifically deleted using the CRISPR-Cas9 or -Cas12a system. Overall, in this paper, we present an efficient multi-gRNA genome editing system utilizing Cas9 or Cas12a that enables highly efficient targeted editing of genes and large chromosomal regions in <i>A</i>. <i>niger</i>.</p>","PeriodicalId":12444,"journal":{"name":"Frontiers in Bioengineering and Biotechnology","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11521959/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142544694","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Frontiers in Bioengineering and Biotechnology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1