Pub Date : 2026-01-27eCollection Date: 2026-01-01DOI: 10.3389/fpls.2026.1746831
Yuanqing Shi, Huilai Yin, Yuemei Zhu, Ruhongji Liu, Qiqi Chen, Hongkun Xie, Binbin Liu, Qingyue Cheng, Chuanhai Shu, Ning Liu, Jun Ma, Yongjian Sun, Na Li, Zhiyuan Yang
To address seed decay in direct-seeded rice caused by waterlogging resulting from inadequate field leveling, this study conducted split-split-plot field experiments in Chongzhou City, Sichuan Province (103°38'31''-103°39'22'' E, 30°33'16''-30°33'54'' N). Specifically, two hybrid rice varieties previously identified as flood-resistant (V1: Jinyou 1319) and flood-sensitive (V2: Jingliangyou 1377) were assigned to the main plots, wet direct seeding (P1) and water direct seeding (P2) were compared in the subplots, and the coating (C1) and no-coating (C2) treatments were applied to the sub-subplots. In the coating treatment with water direct seeding, the seedling percentage of V1 and V2 increased by 25.58% and 78.54%, respectively, the number of effective panicles increased by 4.69% and 12.95%, respectively, and the seed setting rate improved by 15.05% and 16.64%, respectively. This synergy boosted the yields of the two varieties by 23.15% and 31.77%. In particular, the yield of V2 with water direct seeding with coating matched that under wet direct seeding without coating. With little difference in total energy consumption (≤ 1.88%), the sensitive variety with water direct seeding and coating saved irrigation water and labor inputs by 13% and 17%, respectively, in the demonstration area (calculated based on the input of the demonstration area). With water direct seeding, the stable oxygen supply from the coating improved the seed germination rate and seedling growth vitality, especially for the sensitive variety. Thus, the oxygen-releasing coating achieved yield increases, resource conservation, and efficiency enhancement synergistically, providing a valuable solution for the development of direct-seeded rice in China's hilly regions.
{"title":"Oxygen-releasing seed coating enhances yield and resource use efficiency in direct-seeded rice.","authors":"Yuanqing Shi, Huilai Yin, Yuemei Zhu, Ruhongji Liu, Qiqi Chen, Hongkun Xie, Binbin Liu, Qingyue Cheng, Chuanhai Shu, Ning Liu, Jun Ma, Yongjian Sun, Na Li, Zhiyuan Yang","doi":"10.3389/fpls.2026.1746831","DOIUrl":"10.3389/fpls.2026.1746831","url":null,"abstract":"<p><p>To address seed decay in direct-seeded rice caused by waterlogging resulting from inadequate field leveling, this study conducted split-split-plot field experiments in Chongzhou City, Sichuan Province (103°38'31''-103°39'22'' E, 30°33'16''-30°33'54'' N). Specifically, two hybrid rice varieties previously identified as flood-resistant (V1: Jinyou 1319) and flood-sensitive (V2: Jingliangyou 1377) were assigned to the main plots, wet direct seeding (P1) and water direct seeding (P2) were compared in the subplots, and the coating (C1) and no-coating (C2) treatments were applied to the sub-subplots. In the coating treatment with water direct seeding, the seedling percentage of V1 and V2 increased by 25.58% and 78.54%, respectively, the number of effective panicles increased by 4.69% and 12.95%, respectively, and the seed setting rate improved by 15.05% and 16.64%, respectively. This synergy boosted the yields of the two varieties by 23.15% and 31.77%. In particular, the yield of V2 with water direct seeding with coating matched that under wet direct seeding without coating. With little difference in total energy consumption (≤ 1.88%), the sensitive variety with water direct seeding and coating saved irrigation water and labor inputs by 13% and 17%, respectively, in the demonstration area (calculated based on the input of the demonstration area). With water direct seeding, the stable oxygen supply from the coating improved the seed germination rate and seedling growth vitality, especially for the sensitive variety. Thus, the oxygen-releasing coating achieved yield increases, resource conservation, and efficiency enhancement synergistically, providing a valuable solution for the development of direct-seeded rice in China's hilly regions.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"17 ","pages":"1746831"},"PeriodicalIF":4.1,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12885989/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146165023","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-27eCollection Date: 2025-01-01DOI: 10.3389/fpls.2025.1724384
Jonathan A Morales-Marroquín, Erick René López de Paz, Rocío Silva-Rivera, Ana Flávia Francisconi, Roger Alejandro Orellana-Hernandez, José M Palacios, Emmanuel Araya-Valverde, Elizabeth Arnáez Serrano, João Victor da Silva Rabelo-Araujo, Caroline Bertocco Garcia, Matheus Scaketti, Carlos A Colombo, Brenda Gabriela Díaz-Hernández, José Baldin Pinheiro, Maria Imaculada Zucchi
Central America is an understudied global hotspot of plant biodiversity and harbors Acrocomia aculeata (Coyol or Macaúba), a neotropical palm with significant potential for oil and biofuel production. Historically, the region has functioned as a biogeographic land bridge, an isthmus, connecting North and South American biota. Here, we investigate how genomic diversity and potential distribution patterns of A. aculeata are shaped across Central America. A total of 259 samples were collected from Guatemala, Honduras, Nicaragua, Costa Rica, and Panama, covering the full extent of the Central American isthmus. Using a double-digest genotyping-by-sequencing (ddGBS) approach and ecological niche modeling, we assessed variation at 1,523 single nucleotide polymorphisms (SNPs) and evaluated environmental suitability across the region. Our analyses reveal three major genomic clusters: Mesoamerican, Costa Rican, and Panamanian, each comprising subpopulations with distinct levels of genetic diversity. The Mesoamerican group (Guatemala, Honduras, and northern Nicaragua) exhibited the highest diversity and unique genetic signatures, likely reflecting historical migrations and acting as a biodiversity cradle during periods when southern portions of the isthmus were submerged. Biogeographic features such as the Nicaraguan Depression and the Talamanca Cordillera contributed to regional genetic differentiation. Ecological niche models identified Central American pacific lowlands, forested areas, rangelands, and agroecosystems as suitable habitats for A. aculeata. Our combined results reflect the evolutionary history and population structure of A. aculeata in Central America, highlighting the influence of South American source populations and regional barriers. These findings provide a critical foundation for conservation and breeding programs aiming to preserve the genetic diversity and adaptive potential of A. aculeata in a rapidly changing and neglected biodiversity hotspot.
{"title":"Genomic structure, ecological suitability and biogeographic history of the palm <i>Acrocomia aculeata</i> across Central America.","authors":"Jonathan A Morales-Marroquín, Erick René López de Paz, Rocío Silva-Rivera, Ana Flávia Francisconi, Roger Alejandro Orellana-Hernandez, José M Palacios, Emmanuel Araya-Valverde, Elizabeth Arnáez Serrano, João Victor da Silva Rabelo-Araujo, Caroline Bertocco Garcia, Matheus Scaketti, Carlos A Colombo, Brenda Gabriela Díaz-Hernández, José Baldin Pinheiro, Maria Imaculada Zucchi","doi":"10.3389/fpls.2025.1724384","DOIUrl":"10.3389/fpls.2025.1724384","url":null,"abstract":"<p><p>Central America is an understudied global hotspot of plant biodiversity and harbors <i>Acrocomia aculeata</i> (Coyol or Macaúba), a neotropical palm with significant potential for oil and biofuel production. Historically, the region has functioned as a biogeographic land bridge, an isthmus, connecting North and South American biota. Here, we investigate how genomic diversity and potential distribution patterns of <i>A. aculeata</i> are shaped across Central America. A total of 259 samples were collected from Guatemala, Honduras, Nicaragua, Costa Rica, and Panama, covering the full extent of the Central American isthmus. Using a double-digest genotyping-by-sequencing (ddGBS) approach and ecological niche modeling, we assessed variation at 1,523 single nucleotide polymorphisms (SNPs) and evaluated environmental suitability across the region. Our analyses reveal three major genomic clusters: Mesoamerican, Costa Rican, and Panamanian, each comprising subpopulations with distinct levels of genetic diversity. The Mesoamerican group (Guatemala, Honduras, and northern Nicaragua) exhibited the highest diversity and unique genetic signatures, likely reflecting historical migrations and acting as a biodiversity cradle during periods when southern portions of the isthmus were submerged. Biogeographic features such as the Nicaraguan Depression and the Talamanca Cordillera contributed to regional genetic differentiation. Ecological niche models identified Central American pacific lowlands, forested areas, rangelands, and agroecosystems as suitable habitats for <i>A. aculeata</i>. Our combined results reflect the evolutionary history and population structure of <i>A. aculeata</i> in Central America, highlighting the influence of South American source populations and regional barriers. These findings provide a critical foundation for conservation and breeding programs aiming to preserve the genetic diversity and adaptive potential of <i>A. aculeata</i> in a rapidly changing and neglected biodiversity hotspot.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"16 ","pages":"1724384"},"PeriodicalIF":4.1,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12886420/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146164997","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-27eCollection Date: 2025-01-01DOI: 10.3389/fpls.2025.1712975
Congcong Guo, Yan Wang, Xiaoyuan Bao, Hong Fan, Yali Sun, Wei He, Fuyang Cui, Chengxin Bai, Xinying Li, Cai Zhao
Introduction: Water scarcity and uneven distribution of irrigation resources are major challenges for sustaining maize production in arid agro-ecosystems. While intercropping and conservation tillage have been individually recognized for enhancing crop productivity and resource efficiency, their integrated effects with irrigation management remain poorly understood. The long-term field platform was launched in 2015, and the trial was conducted in the northwest region in 2024, we embedded a three-factor split-plot experiment to evaluate the combined impacts of tillage (no-tillage, NT; conventional tillage, CT), planting pattern (maize-pea intercropping, IM; sole maize, SM), and irrigation regime (low, I1; medium, I2; high, I3) on maize yield, canopy photosynthetic dynamics, water-use efficiency, and photosynthetic enzyme gene expression.
Methods: No-tillage intercropping under medium irrigation (NTIMI2) consistently achieved the highest yield, exceeding CTIMI2 and NTSMI2 by 10.5% and 27.2%, respectively, mainly through increases in ear number and thousand-kernel weight. Canopylevel analyses revealed that NTIMI2 sustained higher leaf area index, leaf area duration, crop growth rate, and net assimilation rate during silking-filling, thereby extending the photosynthetic functional period. These physiological advantages translated into greater assimilate supply and efficient partitioning, supported biochemically by the upregulation of nadp-mdh and nadp-me expression during grain filling. Importantly, NTIMI2 optimized the yield-water relationship: water-use efficiency was maximized and comparable yields were maintained relative to high irrigation, but with reduced water input.
Discussion: Our findings provide mechanistic evidence that coordinated tillage and irrigation strategies regulate canopy source-sink dynamics and enzyme-mediated carbon assimilation, thereby reconciling the trade-off between yield stability and water conservation. This study highlights no-tillage intercropping with medium irrigation as a scalable pathway toward climate-resilient and water-efficient maize production in arid regions.
{"title":"No-tillage combined with deficit irrigation improves canopy photosynthesis and water use efficiency to stabilize yield in intercropped maize.","authors":"Congcong Guo, Yan Wang, Xiaoyuan Bao, Hong Fan, Yali Sun, Wei He, Fuyang Cui, Chengxin Bai, Xinying Li, Cai Zhao","doi":"10.3389/fpls.2025.1712975","DOIUrl":"10.3389/fpls.2025.1712975","url":null,"abstract":"<p><strong>Introduction: </strong>Water scarcity and uneven distribution of irrigation resources are major challenges for sustaining maize production in arid agro-ecosystems. While intercropping and conservation tillage have been individually recognized for enhancing crop productivity and resource efficiency, their integrated effects with irrigation management remain poorly understood. The long-term field platform was launched in 2015, and the trial was conducted in the northwest region in 2024, we embedded a three-factor split-plot experiment to evaluate the combined impacts of tillage (no-tillage, NT; conventional tillage, CT), planting pattern (maize-pea intercropping, IM; sole maize, SM), and irrigation regime (low, I1; medium, I2; high, I3) on maize yield, canopy photosynthetic dynamics, water-use efficiency, and photosynthetic enzyme gene expression.</p><p><strong>Methods: </strong>No-tillage intercropping under medium irrigation (NTIMI2) consistently achieved the highest yield, exceeding CTIMI2 and NTSMI2 by 10.5% and 27.2%, respectively, mainly through increases in ear number and thousand-kernel weight. Canopylevel analyses revealed that NTIMI2 sustained higher leaf area index, leaf area duration, crop growth rate, and net assimilation rate during silking-filling, thereby extending the photosynthetic functional period. These physiological advantages translated into greater assimilate supply and efficient partitioning, supported biochemically by the upregulation of nadp-mdh and nadp-me expression during grain filling. Importantly, NTIMI2 optimized the yield-water relationship: water-use efficiency was maximized and comparable yields were maintained relative to high irrigation, but with reduced water input.</p><p><strong>Discussion: </strong>Our findings provide mechanistic evidence that coordinated tillage and irrigation strategies regulate canopy source-sink dynamics and enzyme-mediated carbon assimilation, thereby reconciling the trade-off between yield stability and water conservation. This study highlights no-tillage intercropping with medium irrigation as a scalable pathway toward climate-resilient and water-efficient maize production in arid regions.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"16 ","pages":"1712975"},"PeriodicalIF":4.1,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12887593/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146165054","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Introduction: The application of genetically engineered (GE) crops in pest management raises biosafety concerns among governments, the scientific community, and the public, especially with the emergence of RNA interference (RNAi)-based crops expressing insecticidal double-stranded RNA (dsRNA). These crops may pose challenges to public health, agriculture, and conservation, and they could also present risks to non-target organisms, including beneficial natural enemies of pests. Natural enemies of insects are a significant component of global biodiversity and play a crucial role in managing insect pests within agroecosystems. This study addresses the biosafety concerns associated with insect-resistant transgenic dsRNA-expressing crops, focusing on their potential unintended effects on non-target organisms, particularly natural enemies.
Methods: We combined biological and bioinformatic approaches, utilizing both food-chain delivery and animal-feeding systems, to comprehensively evaluate the potential unintended effects of exogenous insecticidal dsRNA expressed by dsAllim cotton on the biological parameters and transcriptome of the cotton-field predatory natural enemy, Orius similis.
Results: The findings indicate that dsAllim cotton had no adverse effects on O. similis, suggesting its potential safety for non-target beneficial insects. At both developmental and transcriptomic levels, dsAllim cotton showed no significant impact on O. similis.
Discussion: These results support the use of dsAllim cotton as a reference in developing regulatory frameworks for the risk assessment of RNAi crops. Together with previous research, our findings underscore the importance of conducting RNAi crop safety evaluations for non-target organisms on a case-by-case basis, with particular attention to potential off-target effects.
{"title":"Using transcriptome analysis to evaluate the impact of <i>dsAllim</i> cotton on non-target organism <i>O. similis</i>.","authors":"Changyan Li, Haiqin Yao, Kunwei Hua, Danyang Cao, Hang Zhang, Desuo Yin, Xiaolian Zhang, Feng Wang, Weihua Ma, Lizhen Chen, Aiqing You","doi":"10.3389/fpls.2025.1720420","DOIUrl":"10.3389/fpls.2025.1720420","url":null,"abstract":"<p><strong>Introduction: </strong>The application of genetically engineered (GE) crops in pest management raises biosafety concerns among governments, the scientific community, and the public, especially with the emergence of RNA interference (RNAi)-based crops expressing insecticidal double-stranded RNA (dsRNA). These crops may pose challenges to public health, agriculture, and conservation, and they could also present risks to non-target organisms, including beneficial natural enemies of pests. Natural enemies of insects are a significant component of global biodiversity and play a crucial role in managing insect pests within agroecosystems. This study addresses the biosafety concerns associated with insect-resistant transgenic dsRNA-expressing crops, focusing on their potential unintended effects on non-target organisms, particularly natural enemies.</p><p><strong>Methods: </strong>We combined biological and bioinformatic approaches, utilizing both food-chain delivery and animal-feeding systems, to comprehensively evaluate the potential unintended effects of exogenous insecticidal dsRNA expressed by dsAllim cotton on the biological parameters and transcriptome of the cotton-field predatory natural enemy, <i>Orius similis</i>.</p><p><strong>Results: </strong>The findings indicate that dsAllim cotton had no adverse effects on <i>O. similis</i>, suggesting its potential safety for non-target beneficial insects. At both developmental and transcriptomic levels, ds<i>Allim</i> cotton showed no significant impact on <i>O. similis</i>.</p><p><strong>Discussion: </strong>These results support the use of ds<i>Allim</i> cotton as a reference in developing regulatory frameworks for the risk assessment of RNAi crops. Together with previous research, our findings underscore the importance of conducting RNAi crop safety evaluations for non-target organisms on a case-by-case basis, with particular attention to potential off-target effects.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"16 ","pages":"1720420"},"PeriodicalIF":4.1,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12886505/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146165060","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-27eCollection Date: 2025-01-01DOI: 10.3389/fpls.2025.1741491
Mohsen Mohamed Elsharkawy, Faisal Ay Alzahrani
Introduction: Plant viruses severely affect agricultural crops and are the cause of almost half of all major plant diseases. No successful antiviral agents are now widely available for agricultural use against phytoviruses.
Methods: Micrococcus luteus was collected from the rhizosphere of faba bean and molecularly characterized via the 16S rRNA (Acc# PV650302). Soil inoculation greatly enhanced growth and induced systemic resistance to BYMV (Bean yellow mosaic virus) infection in faba bean plants grown in the greenhouse or field conditions.
Results and discussion: Soil drenching application of Micrococcus luteus resulted in a 78% decrease in the severity of the disease and a 70% decrease in viral accumulation levels. Superoxide dismutase (SOD), total chlorophyll content, antioxidant enzymes like catalase (CAT), ascorbate peroxidase (APX), and polyphenol oxidase (PPO) were all significantly increased after M. luteus treatment. The levels of oxidative stress indicators, such as malondialdehyde (MDA) and hydrogen peroxide (H2O2), were shown to be much lower after M. luteus treatment. The transcripts of genes involved in pathogenesis were found to be upregulated with these alterations. It is possible to use M. luteus as a biocontrol agent, which is a practical and environmentally friendly way to protect faba bean plants against BYMV infection, since it may increase faba bean growth and generate systemic resistance against BYMV disease. Antiviral action against viral infections in plants has never been previously documented for M. luteus.
{"title":"Antiviral activity of <i>Micrococcus luteus</i> against the infection of <i>bean yellow mosaic virus</i> in faba bean.","authors":"Mohsen Mohamed Elsharkawy, Faisal Ay Alzahrani","doi":"10.3389/fpls.2025.1741491","DOIUrl":"10.3389/fpls.2025.1741491","url":null,"abstract":"<p><strong>Introduction: </strong>Plant viruses severely affect agricultural crops and are the cause of almost half of all major plant diseases. No successful antiviral agents are now widely available for agricultural use against phytoviruses.</p><p><strong>Methods: </strong><i>Micrococcus luteus</i> was collected from the rhizosphere of faba bean and molecularly characterized via the 16S rRNA (Acc# PV650302). Soil inoculation greatly enhanced growth and induced systemic resistance to BYMV (Bean yellow mosaic virus) infection in faba bean plants grown in the greenhouse or field conditions.</p><p><strong>Results and discussion: </strong>Soil drenching application of Micrococcus luteus resulted in a 78% decrease in the severity of the disease and a 70% decrease in viral accumulation levels. Superoxide dismutase (SOD), total chlorophyll content, antioxidant enzymes like catalase (CAT), ascorbate peroxidase (APX), and polyphenol oxidase (PPO) were all significantly increased after <i>M. luteus</i> treatment. The levels of oxidative stress indicators, such as malondialdehyde (MDA) and hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>), were shown to be much lower after <i>M. luteus</i> treatment. The transcripts of genes involved in pathogenesis were found to be upregulated with these alterations. It is possible to use <i>M. luteus</i> as a biocontrol agent, which is a practical and environmentally friendly way to protect faba bean plants against BYMV infection, since it may increase faba bean growth and generate systemic resistance against BYMV disease. Antiviral action against viral infections in plants has never been previously documented for <i>M. luteus</i>.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"16 ","pages":"1741491"},"PeriodicalIF":4.1,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12886494/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146165112","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-27eCollection Date: 2026-01-01DOI: 10.3389/fpls.2026.1771671
Weiliang Zuo, Muye Xiao, Gunther Doehlemann
Interactions between plants and microbes that colonize them typically result in significant alterations of the host's gene expression. Such transcriptional changes include modulation of immune responses, as well as orchestrating metabolic and developmental changes locally at sites of infection and systemically in the plant. Microbes colonizing diverse hosts have evolved cross-kingdom conserved mechanisms that utilize effectors to participate directly in host transcription process and actively rewrite its transcriptome for their own benefit. In this review, we highlight the mechanisms exploited by plant-colonizing microbes to manipulate the transcriptional machinery of their hosts, including interfering with and mimicking transcription factors and co-regulators. We provide a comprehensive overview of the functionalities of effectors beyond immune suppression and conclude that controlling the host transcriptome is crucial for establishing a favorable niche for microbial plant colonizers.
{"title":"Take control of expression: effector-mediated modulation of the host transcriptional machinery.","authors":"Weiliang Zuo, Muye Xiao, Gunther Doehlemann","doi":"10.3389/fpls.2026.1771671","DOIUrl":"10.3389/fpls.2026.1771671","url":null,"abstract":"<p><p>Interactions between plants and microbes that colonize them typically result in significant alterations of the host's gene expression. Such transcriptional changes include modulation of immune responses, as well as orchestrating metabolic and developmental changes locally at sites of infection and systemically in the plant. Microbes colonizing diverse hosts have evolved cross-kingdom conserved mechanisms that utilize effectors to participate directly in host transcription process and actively rewrite its transcriptome for their own benefit. In this review, we highlight the mechanisms exploited by plant-colonizing microbes to manipulate the transcriptional machinery of their hosts, including interfering with and mimicking transcription factors and co-regulators. We provide a comprehensive overview of the functionalities of effectors beyond immune suppression and conclude that controlling the host transcriptome is crucial for establishing a favorable niche for microbial plant colonizers.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"17 ","pages":"1771671"},"PeriodicalIF":4.1,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12886408/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146165058","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-27eCollection Date: 2025-01-01DOI: 10.3389/fpls.2025.1691250
Zhouli Liu, Lin Qi, Benyang Hu, Yuchen Zhao, Hetong Wang, Nan Zhang, Xiangbo Duan, Binglun Li, Mingran Xin, Sihui Zhong, Hengyu Liu
Introduction: Abiotic stresses (e.g., drought, salinity, heavy metals) intensified by global environmental changes threaten plant seed germination, seedling establishment, and population persistence. Elucidating the spatio-temporal dynamics and adaptive mechanisms of seed stress responses is critical for ecological conservation and stress-resistant crop breeding, yet long-term global and regional research trends lack systematic integration.
Methods: A bibliometric analysis was conducted using CiteSpace v.6.4.R1 to process 15,627 literature records (9,042 from Web of Science; 6,585 from CNKI) spanning 1975-2024, focusing on publication dynamics, cooperation networks, intellectual base, research hotspots, and emerging frontiers.
Results: Seed-stress research evolved through three stages (initial exploration, rapid growth, steady breakthrough), with WOS and CNKI seeing annual increases of 684 and 453 articles post-2020. China led in WOS publication volume, but cooperation networks showed low connectivity. International high-cited literature centered on salinity/oxidative stress (80% reviews), while domestic research focused on staple crop stress responses and practical indicators. Post-2020, international frontiers leaned toward nanomaterials and signal transduction, and domestic frontiers prioritized cadmium pollution control and germination regulation.
Discussion: Global research presents a diverse, integrated landscape, while domestic research exhibits strong application orientation with relative fragmentation. Future research should integrate basic mechanisms with practical needs, strengthen interdisciplinary/international collaboration, and focus on combined stress adaptation and green regulatory technologies, providing theoretical and technical support for enhancing plant stress resistance and ecological security.
全球环境变化加剧了非生物胁迫(如干旱、盐度、重金属),威胁着植物种子萌发、幼苗建立和种群持久性。阐明种子逆境响应的时空动态和适应机制对作物生态保护和抗逆性育种具有重要意义,但长期的全球和区域研究趋势缺乏系统整合。方法:使用CiteSpace v.6.4进行文献计量学分析。R1处理1975-2024年间15627条文献记录(Web of Science 9042条,CNKI 6585条),重点关注出版动态、合作网络、知识基础、研究热点和新兴前沿。结果:种子胁迫研究经历了初步探索、快速成长、稳步突破三个阶段,2020年以后WOS和CNKI的年增长率分别为684篇和453篇。中国在WOS出版物数量上领先,但合作网络的连通性较低。国际上高被引文献以盐度/氧化胁迫为主(80%综述),国内研究主要集中在主粮作物胁迫响应和实用指标方面。2020年后,国际前沿向纳米材料和信号转导方向倾斜,国内前沿向镉污染控制和萌发调控方向倾斜。讨论:全球研究呈现多元化、一体化的格局,国内研究呈现较强的应用导向和相对碎片化。未来的研究应将基本机制与实际需求结合起来,加强跨学科/国际合作,重点研究胁迫适应与绿色调控技术的结合,为提高植物抗逆性和生态安全提供理论和技术支持。
{"title":"Changing research trends in seed responses to stresses: a bibliometric analysis over the last 50 years.","authors":"Zhouli Liu, Lin Qi, Benyang Hu, Yuchen Zhao, Hetong Wang, Nan Zhang, Xiangbo Duan, Binglun Li, Mingran Xin, Sihui Zhong, Hengyu Liu","doi":"10.3389/fpls.2025.1691250","DOIUrl":"10.3389/fpls.2025.1691250","url":null,"abstract":"<p><strong>Introduction: </strong>Abiotic stresses (e.g., drought, salinity, heavy metals) intensified by global environmental changes threaten plant seed germination, seedling establishment, and population persistence. Elucidating the spatio-temporal dynamics and adaptive mechanisms of seed stress responses is critical for ecological conservation and stress-resistant crop breeding, yet long-term global and regional research trends lack systematic integration.</p><p><strong>Methods: </strong>A bibliometric analysis was conducted using CiteSpace v.6.4.R1 to process 15,627 literature records (9,042 from Web of Science; 6,585 from CNKI) spanning 1975-2024, focusing on publication dynamics, cooperation networks, intellectual base, research hotspots, and emerging frontiers.</p><p><strong>Results: </strong>Seed-stress research evolved through three stages (initial exploration, rapid growth, steady breakthrough), with WOS and CNKI seeing annual increases of 684 and 453 articles post-2020. China led in WOS publication volume, but cooperation networks showed low connectivity. International high-cited literature centered on salinity/oxidative stress (80% reviews), while domestic research focused on staple crop stress responses and practical indicators. Post-2020, international frontiers leaned toward nanomaterials and signal transduction, and domestic frontiers prioritized cadmium pollution control and germination regulation.</p><p><strong>Discussion: </strong>Global research presents a diverse, integrated landscape, while domestic research exhibits strong application orientation with relative fragmentation. Future research should integrate basic mechanisms with practical needs, strengthen interdisciplinary/international collaboration, and focus on combined stress adaptation and green regulatory technologies, providing theoretical and technical support for enhancing plant stress resistance and ecological security.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"16 ","pages":"1691250"},"PeriodicalIF":4.1,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12887857/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146165105","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-27eCollection Date: 2025-01-01DOI: 10.3389/fpls.2025.1715826
Fernando S Aguilar, Kendall R Lamkey, Jode W Edwards
Introduction: Heterosis refers to the superiority of a hybrid over its parents. Existing heterosis theory has not sufficiently addressed the contribution of inbreeding at both population level and the level of individual lines within populations. The objectives of the present paper were to formalize theoretical extensions of heterosis theory to address inbreeding at multiple levels, to empirically test the theory in maize, and to provide greater clarity in the quantitative genetic interpretation of heterosis as a function of independent genetic principles of population structure and gene action.
Methods: Existing heterosis theory for biparental crosses was extended by adding terms for inbreeding within panmictic parent populations. The theory was tested with an experiment in maize with a diverse set of panmictic and inbred parents.
Results: Extended theory demonstrated that both heterosis and inbreeding depression are linear functions of inbreeding, FST at the population level, and f at the individual level, under a model of directional dominance. The model demonstrates that heterosis is expected to be negatively related to both midparent value and inbreeding depression within parent populations, i.e., heterosis increases as midparent value decreases and as inbreeding depression within parent populations decreases. Consistent with theoretical predictions we found that that for maize grain yield midparent value predicted 86% of heterosis in a set of crosses and parental inbreeding depression predicted 70% of variation in heterosis among crosses.
Discussion: Model extensions presented here illustrate the excess and transient nature of heterozygosity in the F1 generation that is partially responsible for the unique performance benefit of F1 hybrids. Mechanistically, the theory illustrates that heterosis is a function of two separate and independent mechanisms, population structure and gene action, both of which need to be considered in understanding the mechanisms of heterosis.
{"title":"Dual genetic mechanisms of heterosis: population structure and gene action.","authors":"Fernando S Aguilar, Kendall R Lamkey, Jode W Edwards","doi":"10.3389/fpls.2025.1715826","DOIUrl":"10.3389/fpls.2025.1715826","url":null,"abstract":"<p><strong>Introduction: </strong>Heterosis refers to the superiority of a hybrid over its parents. Existing heterosis theory has not sufficiently addressed the contribution of inbreeding at both population level and the level of individual lines within populations. The objectives of the present paper were to formalize theoretical extensions of heterosis theory to address inbreeding at multiple levels, to empirically test the theory in maize, and to provide greater clarity in the quantitative genetic interpretation of heterosis as a function of independent genetic principles of population structure and gene action.</p><p><strong>Methods: </strong>Existing heterosis theory for biparental crosses was extended by adding terms for inbreeding within panmictic parent populations. The theory was tested with an experiment in maize with a diverse set of panmictic and inbred parents.</p><p><strong>Results: </strong>Extended theory demonstrated that both heterosis and inbreeding depression are linear functions of inbreeding, <i>F<sub>ST</sub></i> at the population level, and <i>f</i> at the individual level, under a model of directional dominance. The model demonstrates that heterosis is expected to be negatively related to both midparent value and inbreeding depression within parent populations, i.e., heterosis increases as midparent value decreases and as inbreeding depression within parent populations decreases. Consistent with theoretical predictions we found that that for maize grain yield midparent value predicted 86% of heterosis in a set of crosses and parental inbreeding depression predicted 70% of variation in heterosis among crosses.</p><p><strong>Discussion: </strong>Model extensions presented here illustrate the excess and transient nature of heterozygosity in the F<sub>1</sub> generation that is partially responsible for the unique performance benefit of F<sub>1</sub> hybrids. Mechanistically, the theory illustrates that heterosis is a function of two separate and independent mechanisms, population structure and gene action, both of which need to be considered in understanding the mechanisms of heterosis.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"16 ","pages":"1715826"},"PeriodicalIF":4.1,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12886449/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146164992","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-27eCollection Date: 2026-01-01DOI: 10.3389/fpls.2026.1658930
Xuemin He, Hongfei Yuan, Yan Li, Chen Yang
Plant growth-promoting endophytes (PGPE) in halophytes have the potential to enhance plant stress resistance and promote growth, demonstrating broad application prospects in agriculture. The culturable microorganisms inhabiting in halophytes and their potential roles in enhancing salt-stress resistance of crops remain limited. This study isolated culturable endophytic bacteria from the roots of two dominant desert halophytes, Haloxylon ammodendron and Halostachys caspica, determined their growth-promoting abilities, and evaluated their capability in improving wheat performance under salt stress. Five saline-alkali tolerant bacterial strains-identified as Priestia endophyticus (S1, Y5), Priestia licheniformis (S2), Streptomyces griseorubens (S7), and Nocardiopsis aegyptia (Y6)-were characterized. These bacterial strains exhibited robust survival in 1.4 mol/L NaCl and high-pH environments (pH > 11.0), while demonstrating multiple growth-promoting traits, including indole-3-acetic acid (IAA) production and inorganic phosphate solubilization. All of the five strains (except for S2) and mixed culture improved the germination potential at 100 mmol/L NaCl. The strains S7, Y5, and mixed culture significantly increased plant height, root length, above ground fresh and dry weight compared to 200 mmol/L NaCl stressed seedlings (200CK)(p < 0.05). Salt stress significantly decreased chlorophyll content by 25.82% and 34.06% under 100 and 200 mmol/L NaCl in comparison to CK. Conversely, PGPE inoculation significantly promoted chlorophyll synthesis of seedlings under salt stress. PGPE inoculation reduced enzyme activities of peroxidase (POD), superoxide dismutase (SOD), and catalase (CAT) relative to the salt stressed seedlings. All inoculation treatments significantly decreased SOD activity by 20.2%-34.62%, and POD activity by 30.79%-53.38%, relative to 200CK. These findings demonstrate that these strains isolated from halophytic plants exhibit positive effects in ameliorating salt stress and improving the growth of wheat seedlings, highlighting their potential for enhancing agricultural productivity in saline-alkali soils.
{"title":"Endophytic plant growth promoting bacteria from two halophytes improve wheat performance under salt stress.","authors":"Xuemin He, Hongfei Yuan, Yan Li, Chen Yang","doi":"10.3389/fpls.2026.1658930","DOIUrl":"10.3389/fpls.2026.1658930","url":null,"abstract":"<p><p>Plant growth-promoting endophytes (PGPE) in halophytes have the potential to enhance plant stress resistance and promote growth, demonstrating broad application prospects in agriculture. The culturable microorganisms inhabiting in halophytes and their potential roles in enhancing salt-stress resistance of crops remain limited. This study isolated culturable endophytic bacteria from the roots of two dominant desert halophytes, <i>Haloxylon ammodendron</i> and <i>Halostachys caspica</i>, determined their growth-promoting abilities, and evaluated their capability in improving wheat performance under salt stress. Five saline-alkali tolerant bacterial strains-identified as <i>Priestia endophyticus</i> (S1, Y5), <i>Priestia licheniformis</i> (S2), <i>Streptomyces griseorubens</i> (S7), and <i>Nocardiopsis aegyptia</i> (Y6)-were characterized. These bacterial strains exhibited robust survival in 1.4 mol/L NaCl and high-pH environments (pH > 11.0), while demonstrating multiple growth-promoting traits, including indole-3-acetic acid (IAA) production and inorganic phosphate solubilization. All of the five strains (except for S2) and mixed culture improved the germination potential at 100 mmol/L NaCl. The strains S7, Y5, and mixed culture significantly increased plant height, root length, above ground fresh and dry weight compared to 200 mmol/L NaCl stressed seedlings (200CK)(<i>p</i> < 0.05). Salt stress significantly decreased chlorophyll content by 25.82% and 34.06% under 100 and 200 mmol/L NaCl in comparison to CK. Conversely, PGPE inoculation significantly promoted chlorophyll synthesis of seedlings under salt stress. PGPE inoculation reduced enzyme activities of peroxidase (POD), superoxide dismutase (SOD), and catalase (CAT) relative to the salt stressed seedlings. All inoculation treatments significantly decreased SOD activity by 20.2%-34.62%, and POD activity by 30.79%-53.38%, relative to 200CK. These findings demonstrate that these strains isolated from halophytic plants exhibit positive effects in ameliorating salt stress and improving the growth of wheat seedlings, highlighting their potential for enhancing agricultural productivity in saline-alkali soils.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"17 ","pages":"1658930"},"PeriodicalIF":4.1,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12887591/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146165012","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-26eCollection Date: 2025-01-01DOI: 10.3389/fpls.2025.1695610
Mehdi Sharifi, Abbas Sayyad, Eman El Sayed
Cover crops are increasingly important in sustainable vineyard management, yet species selection remains site-specific and challenging. We evaluated candidates in two commercial organic vineyards in the semi-arid Okanagan Valley, British Columbia-CFF (13-year Merlot) and KOW (10-year Zweigelt)-using a hybrid multicriteria decision analysis (MCDA) [Analytic Hierarchy Process-Technique for Order Preference by Similarity to Ideal Solution (AHP-TOPSIS)]. Nine in-row and 15 inter-row treatments (annuals and perennials) were evaluated in the 2019 growing season. Field measures included biomass, ground cover, interference with the fruiting zone, invasiveness, pest/disease effects, drought and winter tolerance, and traffic tolerance. In both vineyards, risk of invasiveness (~43-60%) and interference with fruiting zones (~30%) were the most influential criteria. The top under-vine annuals were Lens culinaris (spring lentil), Brassica napus cv. Winfred, and Brassica rapa (purple-top turnip) with high relative closeness (RCi = 0.87-0.96). Among perennials, Ladino Trifolium repens cv. Crescendo ranked the highest (RCi ~ 0.84), supporting its use as a durable under-vine cover. For inter-rows, Pisum sativum + Secale cereale (pea-rye) led at CFF (RCi = 0.89) and placed second at KOW, Trifolium incarnatum ranked second at CFF (RCi = 0.83), and Trifolium alexandrinum led at KOW (RCi = 0.94). Other annual clovers were intermediate (RCi = 0.79-0.88), performing best on finer-textured, cooler, moister sites. The leading perennial inter-row mix was Lolium perenne + Raphanus sativus var. longipinnatus (tillage radish; RCi = 0.94), followed by a Festuca spp. mix (RCi = 0.65-0.69). This MCDA delivers clear, literature-aligned rankings and a data-driven framework to guide regionally adapted cover-crop choices and future web-based decision tools.
{"title":"Defining screening criteria and ranking in-row and inter-row cover crops for irrigated vineyards using a hybrid AHP-TOPSIS model.","authors":"Mehdi Sharifi, Abbas Sayyad, Eman El Sayed","doi":"10.3389/fpls.2025.1695610","DOIUrl":"10.3389/fpls.2025.1695610","url":null,"abstract":"<p><p>Cover crops are increasingly important in sustainable vineyard management, yet species selection remains site-specific and challenging. We evaluated candidates in two commercial organic vineyards in the semi-arid Okanagan Valley, British Columbia-CFF (13-year Merlot) and KOW (10-year Zweigelt)-using a hybrid multicriteria decision analysis (MCDA) [Analytic Hierarchy Process-Technique for Order Preference by Similarity to Ideal Solution (AHP-TOPSIS)]. Nine in-row and 15 inter-row treatments (annuals and perennials) were evaluated in the 2019 growing season. Field measures included biomass, ground cover, interference with the fruiting zone, invasiveness, pest/disease effects, drought and winter tolerance, and traffic tolerance. In both vineyards, risk of invasiveness (~43-60%) and interference with fruiting zones (~30%) were the most influential criteria. The top under-vine annuals were <i>Lens culinaris</i> (spring lentil), <i>Brassica napus</i> cv. Winfred, and <i>Brassica rapa</i> (purple-top turnip) with high relative closeness (RC<sub>i</sub> = 0.87-0.96). Among perennials, Ladino <i>Trifolium repens</i> cv. Crescendo ranked the highest (RC<sub>i</sub> ~ 0.84), supporting its use as a durable under-vine cover. For inter-rows, <i>Pisum sativum</i> + <i>Secale cereale</i> (pea-rye) led at CFF (RC<sub>i</sub> = 0.89) and placed second at KOW, <i>Trifolium incarnatum</i> ranked second at CFF (RC<sub>i</sub> = 0.83), and <i>Trifolium alexandrinum</i> led at KOW (RC<sub>i</sub> = 0.94). Other annual clovers were intermediate (RC<sub>i</sub> = 0.79-0.88), performing best on finer-textured, cooler, moister sites. The leading perennial inter-row mix was <i>Lolium perenne</i> + <i>Raphanus sativus</i> var. <i>longipinnatus</i> (tillage radish; RC<sub>i</sub> = 0.94), followed by a <i>Festuca</i> spp. mix (RC<sub>i</sub> = 0.65-0.69). This MCDA delivers clear, literature-aligned rankings and a data-driven framework to guide regionally adapted cover-crop choices and future web-based decision tools.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"16 ","pages":"1695610"},"PeriodicalIF":4.1,"publicationDate":"2026-01-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12884541/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146156872","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}