Pub Date : 2024-10-15eCollection Date: 2024-01-01DOI: 10.3389/fpls.2024.1452502
Tong Li, Liyuan Zhang, Jianchu Lin
The detection of apple leaf diseases plays a crucial role in ensuring crop health and yield. However, due to variations in lighting and shadow, as well as the complex relationships between perceptual fields and target scales, current detection methods face significant challenges. To address these issues, we propose a new model called YOLO-Leaf. Specifically, YOLO-Leaf utilizes Dynamic Snake Convolution (DSConv) for robust feature extraction, employs BiFormer to enhance the attention mechanism, and introduces IF-CIoU to improve bounding box regression for increased detection accuracy and generalization ability. Experimental results on the FGVC7 and FGVC8 datasets show that YOLO-Leaf significantly outperforms existing models in terms of detection accuracy, achieving mAP50 scores of 93.88% and 95.69%, respectively. This advancement not only validates the effectiveness of our approach but also highlights its practical application potential in agricultural disease detection.
{"title":"Precision agriculture with YOLO-Leaf: advanced methods for detecting apple leaf diseases.","authors":"Tong Li, Liyuan Zhang, Jianchu Lin","doi":"10.3389/fpls.2024.1452502","DOIUrl":"https://doi.org/10.3389/fpls.2024.1452502","url":null,"abstract":"<p><p>The detection of apple leaf diseases plays a crucial role in ensuring crop health and yield. However, due to variations in lighting and shadow, as well as the complex relationships between perceptual fields and target scales, current detection methods face significant challenges. To address these issues, we propose a new model called YOLO-Leaf. Specifically, YOLO-Leaf utilizes Dynamic Snake Convolution (DSConv) for robust feature extraction, employs BiFormer to enhance the attention mechanism, and introduces IF-CIoU to improve bounding box regression for increased detection accuracy and generalization ability. Experimental results on the FGVC7 and FGVC8 datasets show that YOLO-Leaf significantly outperforms existing models in terms of detection accuracy, achieving mAP50 scores of 93.88% and 95.69%, respectively. This advancement not only validates the effectiveness of our approach but also highlights its practical application potential in agricultural disease detection.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":null,"pages":null},"PeriodicalIF":4.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11518753/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142545031","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-15eCollection Date: 2024-01-01DOI: 10.3389/fpls.2024.1484600
Mohammad Faisal, Mohammad Faizan, Sipan Soysal, Abdulrahman A Alatar
Unfavorable environmental conditions pose a major barrier to sustainable agriculture. Among the various innovative strategies developed to protect plants from abiotic stress, the use of phytohormones and nanoparticles as "stress mitigators" has emerged as one of the most important and promising approaches. The objective of this study was to observe the protective role of melatonin (Mel) and silicon oxide nanoparticles (SiO-NPs) in rice (Oryza sativa L.) seedlings under cadmium (Cd) stress. Rice seedlings have reduced growth and phytochemical attributes when grown in Cd-contaminated (0.8 mM) pots. Seedlings under Cd stress had 38% less shoot length (SL), 53% total soluble sugar (TSS) and 57% protein content. However, superoxide dismutase (SOD), hydrogen peroxide (H2O2) and malondialdehyde (MDA) increased by 51%, 37% and 34%, respectively, under Cd stress. Beside this, activities such as peroxidase (POX) also elevated in the plants subjected with Cd-stress. In contrast, Mel (100 µm) as foliar spray and SiO-NPs (100 mg/L) as root dipping reduced oxidative stress in rice seedlings under Cd stress by reducing reactive oxygen species (ROS) generation. Furthermore, the application of Mel and/or SiO-NPs significantly increased the activity of antioxidative enzymes that scavenge ROS. The combined application of SiO-NPs and Mel increased growth, gas exchange and photosynthetic attributes, chlorophyll value, and protein content. It causes alleviation in the activity of SOD, CAT and POX by 73%, 62% and 65%, respectively. Overall, this study findings show that Mel and/or SiO-NPs can potentially protect the rice crop against oxidative damage under Cd stress.
{"title":"Synergistic application of melatonin and silicon oxide nanoparticles modulates reactive oxygen species generation and the antioxidant defense system: a strategy for cadmium tolerance in rice.","authors":"Mohammad Faisal, Mohammad Faizan, Sipan Soysal, Abdulrahman A Alatar","doi":"10.3389/fpls.2024.1484600","DOIUrl":"https://doi.org/10.3389/fpls.2024.1484600","url":null,"abstract":"<p><p>Unfavorable environmental conditions pose a major barrier to sustainable agriculture. Among the various innovative strategies developed to protect plants from abiotic stress, the use of phytohormones and nanoparticles as \"stress mitigators\" has emerged as one of the most important and promising approaches. The objective of this study was to observe the protective role of melatonin (Mel) and silicon oxide nanoparticles (SiO-NPs) in rice (<i>Oryza sativa</i> L.) seedlings under cadmium (Cd) stress. Rice seedlings have reduced growth and phytochemical attributes when grown in Cd-contaminated (0.8 mM) pots. Seedlings under Cd stress had 38% less shoot length (SL), 53% total soluble sugar (TSS) and 57% protein content. However, superoxide dismutase (SOD), hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) and malondialdehyde (MDA) increased by 51%, 37% and 34%, respectively, under Cd stress. Beside this, activities such as peroxidase (POX) also elevated in the plants subjected with Cd-stress. In contrast, Mel (100 µm) as foliar spray and SiO-NPs (100 mg/L) as root dipping reduced oxidative stress in rice seedlings under Cd stress by reducing reactive oxygen species (ROS) generation. Furthermore, the application of Mel and/or SiO-NPs significantly increased the activity of antioxidative enzymes that scavenge ROS. The combined application of SiO-NPs and Mel increased growth, gas exchange and photosynthetic attributes, chlorophyll value, and protein content. It causes alleviation in the activity of SOD, CAT and POX by 73%, 62% and 65%, respectively. Overall, this study findings show that Mel and/or SiO-NPs can potentially protect the rice crop against oxidative damage under Cd stress.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":null,"pages":null},"PeriodicalIF":4.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11518792/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142544947","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-15eCollection Date: 2024-01-01DOI: 10.3389/fpls.2024.1445713
Jiazhang Cai, Iqra Mohsin, Willie Rogers, Mengrui Zhang, Lin Jiang, Russell Malmberg, Magdy Alabady
Sarracenia provide an optimal system for deciphering the host-microbiome interactions at various levels. We analyzed the pitcher microbiomes and metatranscriptomes of the parental species, and F1 and F2 generations from the mapping population (Sarracenia purpurea X Sarracenia psittacina) utilizing high-throughput sequencing methods. This study aimed to examine the host influences on the microbiome structure and function and to identify the key microbiome traits. Our quality datasets included 8,892,553 full-length bacterial 16s rRNA gene sequences and 65,578 assembled metatranscripts with microbial protein annotations. The correlation network of the bacterial microbiome revealed the presence of 3-7 distinct community clusters, with 8 hub and 19 connector genera. The entire microbiome consisted of viruses, bacterial, archaea, and fungi. The richness and diversity of the microbiome varied among the parental species and offspring genotypes despite being under the same greenhouse environmental conditions. We have discovered certain microbial taxa that are genotype-enriched, including the community hub and connector genera. Nevertheless, there were no significant differences observed in the functional enrichment analysis of the metatranscriptomes across the different genotypes, suggesting a functional convergence of the microbiome. We found that the pitcher microcosm harbors both rhizosphere and phyllosphere microbiomes within its boundaries, resulting in a structurally diverse and functionally complex microbiome community. A total of 50,424 microbial metatranscripts were linked to plant growth-promoting microbial proteins. We show that this complex pitcher microbiome possesses various functions that contribute to plant growth promotion, such as biofertilization, bioremediation, phytohormone signaling, stress regulation, and immune response stimulation. Additionally, the pitcher microbiome exhibits traits related to microbe-microbe interactions, such as colonization of plant systems, biofilm formation, and microbial competitive exclusion. In summary, the demonstrated taxonomical divergence and functionally convergence of the pitcher microbiome are impacted by the host genetics, making it an excellent system for discovering novel beneficial microbiome traits.
{"title":"The microbiome and metatranscriptome of a panel from the <i>Sarracenia</i> mapping population reveal complex assembly and function involving host influence.","authors":"Jiazhang Cai, Iqra Mohsin, Willie Rogers, Mengrui Zhang, Lin Jiang, Russell Malmberg, Magdy Alabady","doi":"10.3389/fpls.2024.1445713","DOIUrl":"https://doi.org/10.3389/fpls.2024.1445713","url":null,"abstract":"<p><p><i>Sarracenia</i> provide an optimal system for deciphering the host-microbiome interactions at various levels. We analyzed the pitcher microbiomes and metatranscriptomes of the parental species, and F1 and F2 generations from the mapping population (<i>Sarracenia purpurea</i> X <i>Sarracenia psittacina</i>) utilizing high-throughput sequencing methods. This study aimed to examine the host influences on the microbiome structure and function and to identify the key microbiome traits. Our quality datasets included 8,892,553 full-length bacterial 16s rRNA gene sequences and 65,578 assembled metatranscripts with microbial protein annotations. The correlation network of the bacterial microbiome revealed the presence of 3-7 distinct community clusters, with 8 hub and 19 connector genera. The entire microbiome consisted of viruses, bacterial, archaea, and fungi. The richness and diversity of the microbiome varied among the parental species and offspring genotypes despite being under the same greenhouse environmental conditions. We have discovered certain microbial taxa that are genotype-enriched, including the community hub and connector genera. Nevertheless, there were no significant differences observed in the functional enrichment analysis of the metatranscriptomes across the different genotypes, suggesting a functional convergence of the microbiome. We found that the pitcher microcosm harbors both rhizosphere and phyllosphere microbiomes within its boundaries, resulting in a structurally diverse and functionally complex microbiome community. A total of 50,424 microbial metatranscripts were linked to plant growth-promoting microbial proteins. We show that this complex pitcher microbiome possesses various functions that contribute to plant growth promotion, such as biofertilization, bioremediation, phytohormone signaling, stress regulation, and immune response stimulation. Additionally, the pitcher microbiome exhibits traits related to microbe-microbe interactions, such as colonization of plant systems, biofilm formation, and microbial competitive exclusion. In summary, the demonstrated taxonomical divergence and functionally convergence of the pitcher microbiome are impacted by the host genetics, making it an excellent system for discovering novel beneficial microbiome traits.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":null,"pages":null},"PeriodicalIF":4.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11518717/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142544949","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In air-assisted spraying, pesticide droplet retention on crop leaves is key to evaluating spray effectiveness. However, airflow can deform leaves, reducing droplet retention and affecting spray performance. This study used wind tunnels and high-speed cameras to capture leaf deformation at different airflow speeds and the motion of droplets on curved leaf surfaces. The results showed that leaf curvature during bending deformation is generally less than 0.05 mm-1. Critical wind speed for droplet movement is negatively correlated with droplet size and leaf curvature, with a 24.8% difference between different leaf curvatures and a 17.5% difference between droplet sizes. The droplet's dimensionless shape variable is positively correlated with both droplet size and leaf curvature. The maximum shape variable on curved leaves reaches 0.24, with acceleration differences of about 30%, while droplets of different sizes show a maximum shape variable of 0.18 and an acceleration difference of up to 68%. These findings enhance understanding of droplet-leaf interactions and provide insights for improving pesticide efficiency.
{"title":"Motion behavior of droplets on curved leaf surfaces driven by airflow.","authors":"Zhou-Ming Gao, Wei Hu, Xiao-Ya Dong, Xiao-Yuan Zhao, Song Wang, Jian Chen, Bai-Jing Qiu","doi":"10.3389/fpls.2024.1450831","DOIUrl":"https://doi.org/10.3389/fpls.2024.1450831","url":null,"abstract":"<p><p>In air-assisted spraying, pesticide droplet retention on crop leaves is key to evaluating spray effectiveness. However, airflow can deform leaves, reducing droplet retention and affecting spray performance. This study used wind tunnels and high-speed cameras to capture leaf deformation at different airflow speeds and the motion of droplets on curved leaf surfaces. The results showed that leaf curvature during bending deformation is generally less than 0.05 mm<sup>-1</sup>. Critical wind speed for droplet movement is negatively correlated with droplet size and leaf curvature, with a 24.8% difference between different leaf curvatures and a 17.5% difference between droplet sizes. The droplet's dimensionless shape variable is positively correlated with both droplet size and leaf curvature. The maximum shape variable on curved leaves reaches 0.24, with acceleration differences of about 30%, while droplets of different sizes show a maximum shape variable of 0.18 and an acceleration difference of up to 68%. These findings enhance understanding of droplet-leaf interactions and provide insights for improving pesticide efficiency.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":null,"pages":null},"PeriodicalIF":4.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11518756/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142545029","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
137Cs diffused into the environment due to a nuclear power plant accident has caused serious problems for safe crop production. In plants, Cs+ is similar in its ionic form to K+. Cs+ is absorbed and transported mainly by the K+ transport mechanism. However, the full picture of the genes contributing to Cs+ transport and the transport mechanism of rice is still unclear. This study focused on OsHKT2;1, a candidate Cs+ transporter under low K+ conditions. To verify the ability of OsHKT2;1 to transport Cs+, the OsHKT2;1 mutant (hkt2;1) was grown in a 137Cs-contaminated paddy field in Fukushima. The 137Cs concentration in hkt2;1 aboveground was higher than in the wild type (WT), and the K concentration in these samples did not change between WT and hkt2;1, whereas the Na concentration was lower in hkt2;1. Uptake experiments with radioactive tracers (22Na+, 43K+, and 137Cs+) in hydroponic systems with different elemental compositions showed a negative correlation between Na+ and Cs+ accumulation in rice shoot cultivated under low K+ conditions. These results indicated that OsHKT2;1 does not directly contribute to Cs+ uptake but is an important factor in regulating Cs+ translocation by controlling Na+ accumulation. This indicates the possibility of controlling rice Cs content by regulating the Na+ environment during cultivation.
{"title":"Rice Na<sup>+</sup> absorption mediated by OsHKT2;1 affected Cs<sup>+</sup> translocation from root to shoot under low K<sup>+</sup> environments.","authors":"Satomi Kanno, Shigeto Fujimura, Junko Takahashi, Chenyu Li, Takuro Shinano, Shin-Ichi Nakamura, Nathalie Leonhardt, Jun Furukawa","doi":"10.3389/fpls.2024.1477223","DOIUrl":"https://doi.org/10.3389/fpls.2024.1477223","url":null,"abstract":"<p><p><sup>137</sup>Cs diffused into the environment due to a nuclear power plant accident has caused serious problems for safe crop production. In plants, Cs<sup>+</sup> is similar in its ionic form to K<sup>+</sup>. Cs<sup>+</sup> is absorbed and transported mainly by the K<sup>+</sup> transport mechanism. However, the full picture of the genes contributing to Cs<sup>+</sup> transport and the transport mechanism of rice is still unclear. This study focused on OsHKT2;1, a candidate Cs<sup>+</sup> transporter under low K<sup>+</sup> conditions. To verify the ability of OsHKT2;1 to transport Cs<sup>+</sup>, the <i>OsHKT2;1</i> mutant (<i>hkt2;1</i>) was grown in a <sup>137</sup>Cs-contaminated paddy field in Fukushima. The <sup>137</sup>Cs concentration in <i>hkt2;1</i> aboveground was higher than in the wild type (WT), and the K concentration in these samples did not change between WT and <i>hkt2;1</i>, whereas the Na concentration was lower in <i>hkt2;1</i>. Uptake experiments with radioactive tracers (<sup>22</sup>Na<sup>+</sup>, <sup>43</sup>K<sup>+</sup>, and <sup>137</sup>Cs<sup>+</sup>) in hydroponic systems with different elemental compositions showed a negative correlation between Na<sup>+</sup> and Cs<sup>+</sup> accumulation in rice shoot cultivated under low K<sup>+</sup> conditions. These results indicated that OsHKT2;1 does not directly contribute to Cs<sup>+</sup> uptake but is an important factor in regulating Cs<sup>+</sup> translocation by controlling Na<sup>+</sup> accumulation. This indicates the possibility of controlling rice Cs content by regulating the Na<sup>+</sup> environment during cultivation.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":null,"pages":null},"PeriodicalIF":4.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11518805/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142545034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-15eCollection Date: 2024-01-01DOI: 10.3389/fpls.2024.1403273
Fernanda Pérez, Nicolás Lavandero, Luis Felipe Hinojosa, Mauricio Cisternas, Daniela Araneda, Nicolás Pinilla, Valeska Moraga
The Andean uplift and the concomitant aridification drove the rapid diversification of several plant lineages that were able to colonize warmer and drier habitats at low elevations and wetter and colder habitats at high elevations. These transitions may be facilitated by shifts in plant strategies to cope with drought and cold, which in turn can trigger episodes of accelerated species diversification. Here, we used four nuclear DNA markers to infer phylogenetic relationships of 80 Adesmia species of annuals, perennial herbs, shrubs and small shrubs that occur in Chile and Argentina. We reconstructed ancestral states for area, climatic niche and growth form to explore how Andean uplift and aridification promoted Adesmia diversification. We also performed logistic and linear regression analyses between different components of growth form (life span, woodiness and plant height) and climate. Finally, we estimated speciation rates across the phylogeny. Our results suggest that the ancestor of Chilean Adesmia was a perennial herb that probably originated in the high Andes of northern and central Chile. The low elevations of Central Chile were colonized in the late Miocene, whereas the high latitudes of Patagonia and the hyperarid coastal Atacama Desert were colonized repeatedly since Pliocene by lineages with different growth forms. Multiple and bidirectional transitions between annual and perennial habits and between herbaceous and woody habits were detected. These shifts were not correlated with climate, suggesting that the different growth forms are alternative and successful strategies to survive unfavorable seasons of both desert and high Andes. Net diversification analysis indicated a constant rate of diversification, suggesting that the high species diversity of Adesmia that occur in Chile is due to a uniform speciation process rather than to accelerated episodes of speciation.
{"title":"Speciation and evolution of growth form in <i>Adesmia</i> D. C. (Dalbergieae, Fabaceae): the relevance of Andean uplift and aridification.","authors":"Fernanda Pérez, Nicolás Lavandero, Luis Felipe Hinojosa, Mauricio Cisternas, Daniela Araneda, Nicolás Pinilla, Valeska Moraga","doi":"10.3389/fpls.2024.1403273","DOIUrl":"https://doi.org/10.3389/fpls.2024.1403273","url":null,"abstract":"<p><p>The Andean uplift and the concomitant aridification drove the rapid diversification of several plant lineages that were able to colonize warmer and drier habitats at low elevations and wetter and colder habitats at high elevations. These transitions may be facilitated by shifts in plant strategies to cope with drought and cold, which in turn can trigger episodes of accelerated species diversification. Here, we used four nuclear DNA markers to infer phylogenetic relationships of 80 <i>Adesmia</i> species of annuals, perennial herbs, shrubs and small shrubs that occur in Chile and Argentina. We reconstructed ancestral states for area, climatic niche and growth form to explore how Andean uplift and aridification promoted <i>Adesmia</i> diversification. We also performed logistic and linear regression analyses between different components of growth form (life span, woodiness and plant height) and climate. Finally, we estimated speciation rates across the phylogeny. Our results suggest that the ancestor of Chilean <i>Adesmia</i> was a perennial herb that probably originated in the high Andes of northern and central Chile. The low elevations of Central Chile were colonized in the late Miocene, whereas the high latitudes of Patagonia and the hyperarid coastal Atacama Desert were colonized repeatedly since Pliocene by lineages with different growth forms. Multiple and bidirectional transitions between annual and perennial habits and between herbaceous and woody habits were detected. These shifts were not correlated with climate, suggesting that the different growth forms are alternative and successful strategies to survive unfavorable seasons of both desert and high Andes. Net diversification analysis indicated a constant rate of diversification, suggesting that the high species diversity of <i>Adesmia</i> that occur in Chile is due to a uniform speciation process rather than to accelerated episodes of speciation.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":null,"pages":null},"PeriodicalIF":4.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11518719/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142545035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-15eCollection Date: 2024-01-01DOI: 10.3389/fpls.2024.1479726
Jilin Chen, Jin Zhang, Chao Fang, Lijun Ren, Tong Lan, Weiren Wu, Tao Lan
Drought tolerance and plant growth are critical factors affecting rice yield, and identifying genes that can enhance these traits is essential for improving crop resilience and productivity. Using a growth-depressed and drought-tolerant (gddt) mutant of the indica rice variety Huanghuazhan (HHZ) generated by radiation mutagenesis, we discovered a novel gene, GDDT, which plays a dual role in plant biology: it acts as a positive regulator of growth and development, but as a negative regulator of drought resistance. The gddt mutant displayed a marked reduction in plant growth and seed setting rate, yet exhibited an unexpected advantage in terms of drought tolerance. Our research revealed that the enhanced drought tolerance of the gddt mutant is primarily due to a decrease in stomatal size, density, and aperture, which reduces water loss, and an activation of the reactive oxygen species (ROS) scavenging system, which helps protect the plant from oxidative stress. These physiological changes are observed both under drought conditions and in normal growth conditions. This discovery highlights the importance of GDDT as a pleiotropic gene with significant implications for both plant growth and drought resistance. Through map-based cloning, we determined that the protein disulfide isomerase-like (PDIL) gene OsPDIL1-5 is the GDDT gene. The protein encoded by this gene was localized to the endoplasmic reticulum, consistent with its predicted function. Our findings provide new insights into the role of PDIL genes in rice and suggest that further study of GDDT could lead to a better understanding of how these genes contribute to the complex interplay between plant growth, development, and stress responses. This knowledge could pave the way for the development of rice varieties that are more resilient to drought, thereby increasing crop yields and ensuring food security in water-limited environments.
{"title":"<i>OsPDIL1-5</i>: dual role in promoting growth and development while modulating drought stress tolerance in rice (<i>Oryza sativa</i> L.).","authors":"Jilin Chen, Jin Zhang, Chao Fang, Lijun Ren, Tong Lan, Weiren Wu, Tao Lan","doi":"10.3389/fpls.2024.1479726","DOIUrl":"https://doi.org/10.3389/fpls.2024.1479726","url":null,"abstract":"<p><p>Drought tolerance and plant growth are critical factors affecting rice yield, and identifying genes that can enhance these traits is essential for improving crop resilience and productivity. Using a <i>growth-depressed and drought-tolerant</i> (<i>gddt</i>) mutant of the <i>indica</i> rice variety Huanghuazhan (HHZ) generated by radiation mutagenesis, we discovered a novel gene, <i>GDDT</i>, which plays a dual role in plant biology: it acts as a positive regulator of growth and development, but as a negative regulator of drought resistance. The <i>gddt</i> mutant displayed a marked reduction in plant growth and seed setting rate, yet exhibited an unexpected advantage in terms of drought tolerance. Our research revealed that the enhanced drought tolerance of the <i>gddt</i> mutant is primarily due to a decrease in stomatal size, density, and aperture, which reduces water loss, and an activation of the reactive oxygen species (ROS) scavenging system, which helps protect the plant from oxidative stress. These physiological changes are observed both under drought conditions and in normal growth conditions. This discovery highlights the importance of <i>GDDT</i> as a pleiotropic gene with significant implications for both plant growth and drought resistance. Through map-based cloning, we determined that the protein disulfide isomerase-like (PDIL) gene <i>OsPDIL1-5</i> is the <i>GDDT</i> gene. The protein encoded by this gene was localized to the endoplasmic reticulum, consistent with its predicted function. Our findings provide new insights into the role of PDIL genes in rice and suggest that further study of <i>GDDT</i> could lead to a better understanding of how these genes contribute to the complex interplay between plant growth, development, and stress responses. This knowledge could pave the way for the development of rice varieties that are more resilient to drought, thereby increasing crop yields and ensuring food security in water-limited environments.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":null,"pages":null},"PeriodicalIF":4.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11518757/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142544990","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-15eCollection Date: 2024-01-01DOI: 10.3389/fpls.2024.1482934
Zhen Zhang, Mohammad Shafiqul Islam, Jiuzhi Xia, Xiangyang Feng, Muhammad Noman, Jing Wang, Zhongna Hao, Haiping Qiu, Rongyao Chai, Yingying Cai, Yanli Wang, Jiaoyu Wang
The rice blast disease, caused by the fungus Magnaporthe oryzae, is a significant agricultural problem that adversely impacts rice production and food security. Understanding the precise molecular pathways involved in the interaction between the pathogen and its host is crucial for developing effective disease management strategies. This study examines the crucial function of the nucleolin MoNsr1 in regulating M. oryzae physiological functions. ΔMoNsr1 deletion mutants showed reduced fungal growth, asexual sporulation, and pathogenicity compared to the wild-type. Mutants exhibited impaired conidial germination and appressoria formation, reducing infection progression. Additionally, ΔMoNsr1 deletion mutant had less turgor pressure, confirming that MoNsr1 is essential for cell wall biogenesis and resistant to external stresses. Furthermore, ΔMoNsr1 deletion mutant showed enhanced sensitivity to oxidative stress, reactive oxygen species, and cold tolerance. Our results offer a thorough understanding of the function of MoNsr1 in the virulence and stress-resilient capability in M. oryzae. These findings provide insights into the novel targets and contribute to the emergence of innovative approaches for managing rice blast disease.
{"title":"The nucleolin MoNsr1 plays pleiotropic roles in the pathogenicity and stress adaptation in the rice blast fungus <i>Magnaporthe oryzae</i>.","authors":"Zhen Zhang, Mohammad Shafiqul Islam, Jiuzhi Xia, Xiangyang Feng, Muhammad Noman, Jing Wang, Zhongna Hao, Haiping Qiu, Rongyao Chai, Yingying Cai, Yanli Wang, Jiaoyu Wang","doi":"10.3389/fpls.2024.1482934","DOIUrl":"10.3389/fpls.2024.1482934","url":null,"abstract":"<p><p>The rice blast disease, caused by the fungus <i>Magnaporthe oryzae</i>, is a significant agricultural problem that adversely impacts rice production and food security. Understanding the precise molecular pathways involved in the interaction between the pathogen and its host is crucial for developing effective disease management strategies. This study examines the crucial function of the nucleolin MoNsr1 in regulating <i>M. oryzae</i> physiological functions. Δ<i>MoNsr1</i> deletion mutants showed reduced fungal growth, asexual sporulation, and pathogenicity compared to the wild-type. Mutants exhibited impaired conidial germination and appressoria formation, reducing infection progression. Additionally, Δ<i>MoNsr1</i> deletion mutant had less turgor pressure, confirming that MoNsr1 is essential for cell wall biogenesis and resistant to external stresses. Furthermore, Δ<i>MoNsr1</i> deletion mutant showed enhanced sensitivity to oxidative stress, reactive oxygen species, and cold tolerance. Our results offer a thorough understanding of the function of MoNsr1 in the virulence and stress-resilient capability in <i>M. oryzae</i>. These findings provide insights into the novel targets and contribute to the emergence of innovative approaches for managing rice blast disease.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":null,"pages":null},"PeriodicalIF":4.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11528547/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142566809","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-15eCollection Date: 2024-01-01DOI: 10.3389/fpls.2024.1394244
Sachini Lakmini Manatunga, Agnelo Furtado, Bruce Topp, Mobashwer Alam, Patrick J Mason, Ardashir Kharabian-Masouleh, Robert J Henry
The genus Macadamia in the Proteaceae family includes four species native to Australia. Two of the four species, M. integrifolia and M. tetraphylla, have recently been utilized to generate domesticated macadamia varieties, grown for their edible nuts. To explore diversity in macadamia genetic resources, a total of 166 wild genotypes, representing all four species, were sequenced. The four species were clearly distinguished as four separate clades in a phylogenetic analysis of the nuclear genome (based upon concatenated nuclear gene CDS and SNPs). The two larger species (M. integrifolia and M. tetraphylla) formed a clade, that had diverged from a clade including the smaller species (M. ternifolia and M. jansenii). The greatest diversity in nuclear and chloroplast genomes was found in the more widely distributed M. integrifolia while the rare M. jansenii showed little diversity. The chloroplast phylogeny revealed a much more complex evolutionary history. Multiple chloroplast capture events have resulted in chloroplast genome clades, including genotypes from different species. This suggests extensive reticulate evolution in Macadamia despite the emergence of the four distinct species that are supported by the analysis of their nuclear genomes. The chloroplast genomes showed strong associations with geographical distribution reflecting limited maternal gene movement in these species that have large seeds. The nuclear genomes showed lesser geographical differences, probably reflecting the longer distance pollen movement. This improved understanding of the distribution of diversity in Macadamia will aid in the conservation of these rare species now found in highly fragmented rainforest remnants.
山榄科澳洲坚果属包括原产于澳大利亚的四个物种。这四个物种中的两个,即M. integrifolia和M. tetraphylla,最近被用来培育驯化的澳洲坚果品种,种植的目的是为了获得可食用的坚果。为了探索澳洲坚果遗传资源的多样性,我们对代表所有四个物种的 166 个野生基因型进行了测序。在核基因组系统发育分析中,这四个物种被明确区分为四个独立的支系(基于核基因 CDS 和 SNPs 连接)。两个较大的物种(M. integrifolia 和 M. tetraphylla)形成一个支系,该支系从包括较小物种(M. ternifolia 和 M. jansenii)在内的支系中分化出来。分布较广的 M. integrifolia 的核基因组和叶绿体基因组具有最大的多样性,而罕见的 M. jansenii 则几乎没有多样性。叶绿体系统发育揭示了更为复杂的进化历史。多次叶绿体捕获事件产生了叶绿体基因组支系,包括来自不同物种的基因型。这表明尽管出现了四个不同的物种,但澳洲坚果的网状进化非常广泛,核基因组分析也支持了这一点。叶绿体基因组显示出与地理分布的紧密联系,反映出在这些拥有大型种子的物种中母本基因的移动有限。核基因组显示的地理分布差异较小,这可能反映了花粉移动的距离较长。对澳洲坚果多样性分布的进一步了解将有助于保护这些目前在高度破碎的雨林遗迹中发现的稀有物种。
{"title":"Analysis of phylogenetic relationships in <i>Macadamia</i> shows evidence of extensive reticulate evolution.","authors":"Sachini Lakmini Manatunga, Agnelo Furtado, Bruce Topp, Mobashwer Alam, Patrick J Mason, Ardashir Kharabian-Masouleh, Robert J Henry","doi":"10.3389/fpls.2024.1394244","DOIUrl":"https://doi.org/10.3389/fpls.2024.1394244","url":null,"abstract":"<p><p>The genus <i>Macadamia</i> in the Proteaceae family includes four species native to Australia. Two of the four species, <i>M. integrifolia</i> and <i>M. tetraphylla</i>, have recently been utilized to generate domesticated macadamia varieties, grown for their edible nuts. To explore diversity in macadamia genetic resources, a total of 166 wild genotypes, representing all four species, were sequenced. The four species were clearly distinguished as four separate clades in a phylogenetic analysis of the nuclear genome (based upon concatenated nuclear gene CDS and SNPs). The two larger species (<i>M. integrifolia</i> and <i>M. tetraphylla</i>) formed a clade, that had diverged from a clade including the smaller species (<i>M. ternifolia</i> and <i>M. jansenii</i>). The greatest diversity in nuclear and chloroplast genomes was found in the more widely distributed <i>M. integrifolia</i> while the rare <i>M. jansenii</i> showed little diversity. The chloroplast phylogeny revealed a much more complex evolutionary history. Multiple chloroplast capture events have resulted in chloroplast genome clades, including genotypes from different species. This suggests extensive reticulate evolution in <i>Macadamia</i> despite the emergence of the four distinct species that are supported by the analysis of their nuclear genomes. The chloroplast genomes showed strong associations with geographical distribution reflecting limited maternal gene movement in these species that have large seeds. The nuclear genomes showed lesser geographical differences, probably reflecting the longer distance pollen movement. This improved understanding of the distribution of diversity in <i>Macadamia</i> will aid in the conservation of these rare species now found in highly fragmented rainforest remnants.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":null,"pages":null},"PeriodicalIF":4.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11518779/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142544993","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}