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Recognition factors of Dolichos biflorus agglutinin (DBA) and their accommodation sites. 芍药凝集素(DBA)的识别因子及其调节位点。
IF 3 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-08-01 DOI: 10.1007/s10719-023-10118-7
Albert M Wu, Anna Dudek, Yung Liang Chen

Dolichos biflorus agglutinin (DBA) is one of the well known plant lectins that are widely used in clinical serology to differentiate human blood group A1 and A2 erythrocytes and also applied to glycobiology. However, the knowledge of recognition factors of polyvalent (super) glycotopes in glycans and the roles of functional group and epimer in monosaccharide (sub-monosaccharide recognition factor) have not been well established. The size and shape of the recognition (combining) site of DBA has not been clearly defined. In this study, many importnat recognition factors of DBA-glycan binding were characterized by our established enzyme-linked lectinosorbent (ELLSA) and inhibition assays. The results of these assays showed that the intensity profile of the recognition factors for the major combining site of DBA was expressed by Mass relative potency (Mass R.P.) and shown by decreasing order of high density of polyvalent GalNAcα1 → (super glycotopes, 3.7 × 103) >> the corresponding β anomers >> monomeric GalNAcα1 → related glycotopes (GalNAc as 1.0) >> their GalNAc β-anomers >> Gal (absence of NHCH3CO at carbon-2 of GAlNAc) and GlcNAc (different epimer of Carbon-4 in GalNAc). From the all data available, it is proposed that the combining site of DBA should consist of a small cavity shape as major site and most complementary to monomeric GalNAcα → located at both terminal reducing end (Tn) and nonreducing end of glycan chains, and with a wide and broad area as subsite to accomodate from mono- to tetra-saccharides (GalNAcβ, Galβ1 → 3/4GlcNAc, lFuc1 → 2Galβ1 → 3/4GlcNAc, GalNAcβ1 → 3Galα1 → 4Galβ1 → 4Glc) at the nonreducing side. In this study, it has provided the most (comprehensive) recognition knowledge of DBA-glycan interactions at the factors of glycotope, super glycotope/sub-monosaccharide levels. Thus, it should expand and upgrade the conventional concept of the combining (recognition) site of DBA since 1980s.

芍药凝集素(Dolichos biflorus agglutinin, DBA)是一种著名的植物凝集素,在临床血清学中广泛用于区分人A1和A2血型红细胞,并应用于糖生物学。然而,对多糖中多价(超)糖基的识别因子以及功能基团和表聚体在单糖(亚单糖识别因子)中的作用的认识尚未很好地建立。DBA的识别(结合)位点的大小和形状还没有明确的定义。在本研究中,我们建立的酶联凝集剂(ELLSA)和抑制实验表征了许多重要的dba -聚糖结合识别因子。这些化验的结果表明,强度轮廓的识别因素的主要结合点DBA是表达的质量相对效力质量(r)和显示减少的高密度多价GalNAcα(1→(超级glycotopes, 3.7×103)> >相应的β异头物> >单体的GalNAcα(1→相关glycotopes (GalNAc 1.0) > >他们GalNAcβ-anomers > >加(没有在碳2 NHCH3CO GalNAc)和GlcNAc Carbon-4 GalNAc)的(不同的差向异构体。从所有可用的数据,提出了结合部位的DBA应该包含一个小腔形状作为主要网站最互补的单体的GalNAcα→位于两个终端减少结束(Tn)和nonreducing多糖链,和一个广泛的和广泛的区域作为子从mono -容纳tetra-saccharides (GalNAcβ,加β(1→3/4GlcNAc, lFuc1→2加β1→3/4GlcNAc, GalNAcβ(1→3加α1→4加β(1→4、相关)在nonreducing端。本研究在糖基、超糖基/亚单糖水平上提供了最(全面)的对dba -聚糖相互作用的认识。因此,应该对20世纪80年代以来DBA组合(识别)位点的传统概念进行扩展和升级。
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引用次数: 0
Neuroimmunomodulatory properties of polysialic acid. 聚唾液酸的神经免疫调节特性。
IF 3 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1007/s10719-023-10120-z
Lina Gretenkort, Hauke Thiesler, Herbert Hildebrandt

Polymeric sialic acid (polysialic acid, polySia) is a remarkable posttranslational modification of only few select proteins. The major, and most prominent polySia protein carrier is the neural cell adhesion molecule NCAM. Here, the key functions of polySia are to regulate interactions of NCAM and to balance cellular interactions in brain development and plasticity. During recent years, however, increasing evidence points towards a role of polySia in the modulation of immune responses. These immunomodulatory functions can be mediated by polySia on proteins other than NCAM, presented either on the cell surface or released into the extracellular space. This perspective review summarizes our current knowledge and addresses major open questions on polySia and polySia receptors in modulating innate immune responses in the brain.

聚合唾液酸(polysialic acid, polySia)是一种翻译后修饰蛋白。主要和最突出的polySia蛋白载体是神经细胞粘附分子NCAM。在这里,polySia的关键功能是调节NCAM的相互作用,平衡大脑发育和可塑性中的细胞相互作用。然而,近年来,越来越多的证据表明,多sia在调节免疫反应中的作用。这些免疫调节功能可以由NCAM以外的蛋白上的多sia介导,这些蛋白要么呈现在细胞表面,要么释放到细胞外空间。这篇综述综述了我们目前的知识,并解决了多sia和多sia受体在调节大脑先天免疫反应中的主要开放性问题。
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引用次数: 0
Vibrio-binding gangliosides in fish intestinal tracts. 鱼类肠道中与弧菌结合的神经节苷。
IF 3 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1007/s10719-023-10110-1
Makoto Ito, Shinichi Chisada, Naoyuki Matsunaga, Nozomu Okino

It has been clarified that pathogens bind to glycosphingolipid (GSL) receptors in mammals, but there have been very few reports on pathogen-binding GSLs in fish. Vibrios are facultative anaerobic bacteria ubiquitous in marine and brackish environments. They are members of the normal intestinal microflora of healthy fish, but some species can cause a disease called vibriosis in fish and shellfish when the hosts are physiologically or immunologically weakened. The adherence of vibrios to host intestinal tracts is a significant event not only for survival and growth but also in terms of pathogenicity. We show in this mini-review that sialic acid-containing GSLs (gangliosides), GM4 and GM3, are receptors to which vibrios adhere to epithelial cells in the intestinal tract of fish. We also describe the enzymes responsible for synthesizing these Vibrio-binding gangliosides in fish.

在哺乳动物中,病原体可以结合鞘糖脂受体(GSL),但在鱼类中很少报道病原体结合鞘糖脂受体。弧菌是兼性厌氧细菌,普遍存在于海洋和微咸环境中。它们是健康鱼类正常肠道菌群的成员,但当宿主生理或免疫功能减弱时,一些物种会引起鱼类和贝类的弧菌病。弧菌粘附于宿主肠道不仅对生存和生长,而且在致病性方面都是一个重要事件。我们在这篇小型综述中表明,含唾液酸的GSLs(神经节苷脂)GM4和GM3是鱼类肠道中弧菌粘附在上皮细胞上的受体。我们还描述了在鱼类中负责合成这些结合弧菌神经节苷的酶。
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引用次数: 0
Analysis of the intramolecular 1,7-lactone of N-acetylneuraminic acid using HPLC-MS: relationship between detection and stability. n -乙酰神经氨酸分子内1,7-内酯的HPLC-MS分析:检测与稳定性的关系。
IF 3 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1007/s10719-023-10114-x
Paolo La Rocca, Ivana Lavota, Marco Piccoli, Federica Cirillo, Andrea Ghiroldi, Giuseppe Ciconte, Carlo Pappone, Pietro Allevi, Paola Rota, Luigi Anastasia

A subclass of the sialic acid family consists of intramolecular lactones that may function as key indicators of physiological and pathological states. However, the existence of these compounds in free form is highly improbable, since they are unlikely to exist in an aqueous solution due to their lability. Current analytical method used to detect them in biological fluids has not recognized their reactivity in solution and is prone to misidentification. However, recent advances in synthetic methods for 1,7-lactones have allowed the preparation of these sialic acid derivatives as authentic reference standards. We report here the development of a new HPLC-MS method for the simultaneous detection of the 1,7-lactone of N-acetylneuraminic acid, its γ-lactone derivative, and N-acetylneuraminic acid that overcomes the limitations of the previous analytical procedure for their identification.

唾液酸家族的一个亚类由分子内酯组成,可能作为生理和病理状态的关键指标。然而,这些化合物以自由形式存在是极不可能的,因为由于它们的不稳定性,它们不太可能存在于水溶液中。目前在生物流体中检测它们的分析方法还没有认识到它们在溶液中的反应性,容易出现误判。然而,近年来1,7-内酯合成方法的进展使得这些唾液酸衍生物的制备成为可靠的参考标准。本文报道了一种新的高效液相色谱-质谱同时检测n -乙酰神经氨酸及其γ-内酯衍生物的1,7-内酯和n -乙酰神经氨酸的方法,该方法克服了以往分析方法的局限性。
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引用次数: 0
Sialylation of cell surface glycoconjugates modulates cytosolic galectin-mediated responses upon organelle damage : Minireview. 细胞表面糖缀合物的唾液化调节细胞器损伤时细胞内半乳糖凝集素介导的反应。
IF 3 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1007/s10719-023-10112-z
I-Chun Weng, Hung-Lin Chen, Wei-Han Lin, Fu-Tong Liu

Sialylation is an important terminal modification of glycoconjugates that mediate diverse functions in physiology and disease. In this review we focus on how altered cell surface sialylation status is sensed by cytosolic galectins when the integrity of intracellular vesicles or organelles is compromised to expose luminal glycans to the cytosolic milieu, and how this impacts galectin-mediated cellular responses. In addition, we discuss the roles of mammalian sialidases on the cell surface, in the organelle lumen and cytosol, and raise the possibility that intracellular glycan processing may be critical in controlling various galectin-mediated responses when cells encounter stress.

唾液酰化是糖缀合物的重要末端修饰,在生理和疾病中介导多种功能。在这篇综述中,我们关注的是当细胞内囊泡或细胞器的完整性受到损害而使腔内聚糖暴露于细胞质环境中时,细胞内的半乳糖凝集素如何感知改变的细胞表面唾液化状态,以及这如何影响半乳糖凝集素介导的细胞反应。此外,我们讨论了哺乳动物唾液酸酶在细胞表面、细胞器腔和细胞质中的作用,并提出细胞内聚糖加工可能在细胞遇到应激时控制各种半乳糖凝集素介导的反应中起关键作用。
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引用次数: 0
Synthesis and biological activity of ganglioside GM3 analogues with a (S)-CHF-Sialoside linkage and an alkyne tag. 具有(S)- chf -硅苷键和炔标记的神经节苷甘油酯GM3类似物的合成和生物活性。
IF 3 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1007/s10719-023-10111-0
Eisuke Ota, Daiki Takeda, Kana Oonuma, Marie Kato, Hiroaki Matoba, Makoto Yoritate, Mikiko Sodeoka, Go Hirai

The alkyne tag, consisting of only two carbons, is widely used as a bioorthogonal functional group due to its compactness and nonpolar structure, and various probes consisting of lipids bearing an alkyne tag have been developed. Here, we designed and synthesized analogues of ganglioside GM3 bearing an alkyne tag in the fatty acid moiety and evaluated the effect of the alkyne tag on the biological activity. To eliminate the influence of other factors such as degradation of the glycan chain when evaluating biological activity in a cellular environment, we introduced the tag into sialidase-resistant (S)-CHF-linked GM3 analogues developed by our group. The designed analogues were efficiently synthesized by tuning the protecting group of the glucosylsphingosine acceptor. The growth-promoting effect of these analogues on Had-1 cells was dramatically altered depending upon the position of the alkyne tag.

炔标签仅由两个碳原子组成,由于其致密和非极性结构而被广泛用作生物正交官能团,并且已经开发出各种由带有炔标签的脂质组成的探针。本文设计并合成了脂肪酸部分带有炔基标签的神经节苷脂GM3类似物,并评价了炔基标签对其生物活性的影响。为了在细胞环境中评估生物活性时消除其他因素的影响,如糖链的降解,我们将该标签引入到我们团队开发的抗唾液酸酶(S)- chf连接的GM3类似物中。通过调节葡萄糖鞘苷受体的保护基团,有效地合成了所设计的类似物。这些类似物对hd -1细胞的促生长作用随着炔标签的位置而显著改变。
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引用次数: 0
Recently developed glycosphingolipid probes and their dynamic behavior in cell plasma membranes as revealed by single-molecule imaging. 近年来研制的鞘糖脂探针及其在细胞膜中的动态行为的单分子成像研究。
IF 3 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1007/s10719-023-10116-9
Kenichi G N Suzuki, Naoko Komura, Hiromune Ando

Glycosphingolipids, including gangliosides, are representative lipid raft markers that perform a variety of physiological roles in cell membranes. However, studies aimed at revealing their dynamic behavior in living cells are rare, mostly due to a lack of suitable fluorescent probes. Recently, the ganglio-series, lacto-series, and globo-series glycosphingolipid probes, which mimic the behavior of the parental molecules in terms of partitioning to the raft fraction, were developed by conjugating hydrophilic dyes to the terminal glycans of glycosphingolipids using state-of-art entirely chemical-based synthetic techniques. High-speed, single-molecule observation of these fluorescent probes revealed that gangliosides were scarcely trapped in small domains (100 nm in diameter) for more than 5 ms in steady-state cells, suggesting that rafts including gangliosides were always moving and very small. Furthermore, dual-color, single-molecule observations clearly showed that homodimers and clusters of GPI-anchored proteins were stabilized by transiently recruiting sphingolipids, including gangliosides, to form homodimer rafts and the cluster rafts, respectively. In this review, we briefly summarize recent studies, the development of a variety of glycosphingolipid probes as well as the identification of the raft structures including gangliosides in living cells by single-molecule imaging.

鞘糖脂,包括神经节苷,是具有代表性的脂质筏标记物,在细胞膜中发挥多种生理作用。然而,旨在揭示其在活细胞中的动态行为的研究很少,主要是由于缺乏合适的荧光探针。最近,通过使用最先进的完全基于化学的合成技术将亲水染料偶联到鞘糖脂的末端聚糖上,开发了神经节系列、乳酸系列和globo系列鞘糖脂探针,这些探针在分配到筏分数方面模仿了亲本分子的行为。对这些荧光探针的高速单分子观察显示,在稳态细胞中,神经节苷脂几乎不被困在小区域(直径100 nm)中超过5 ms,这表明包含神经节苷脂的筏总是在移动并且非常小。此外,双色单分子观察清楚地表明,gpi锚定蛋白的同型二聚体和簇分别通过瞬时募集鞘脂(包括神经节苷脂)形成同型二聚体筏和簇筏来稳定。本文就近年来的研究、各种鞘糖脂探针的发展以及利用单分子成像技术鉴定活细胞中包括神经节苷脂在内的筏状结构作一综述。
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引用次数: 0
Possible regulation of ganglioside GD3 synthase gene expression with DNA methylation in human glioma cells. 神经胶质瘤细胞DNA甲基化对神经节苷脂GD3合成酶基因表达的可能调控。
IF 3 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1007/s10719-023-10108-9
Yurie Yamamoto, Ken Higashimoto, Yuki Ohkawa, Hidenobu Soejima, Kei Kaneko, Yuhsuke Ohmi, Keiko Furukawa, Koichi Furukawa

Gangliosides are expressed in nervous systems and some neuroectoderm-derived tumors at high levels and play pivotal roles. However, mechanisms for the regulation of glycosyltransferase genes responsible for the ganglioside synthesis are not well understood. In this study, we analyzed DNA methylation patterns of promoter regions of GD3 synthase (ST8SIA1) as well as mRNA levels and ganglioside expression using human glioma cell lines. Among 5 cell lines examined, 4 lines showed changes in the expression levels of related genes after treatment with 5-aza-dC. LN319 showed up-regulation of St8sia1 and increased b-series gangliosides after 5-aza-dC treatment, and an astrocytoma cell line, AS showed high expression of ST8SIA1 and b-series gangliosides persistently before and after 5-Aza-2'-deoxycytidine treatment. Using these 2 cell lines, DNA methylation patterns of the promoter regions of the gene were analyzed by bisulfite-sequencing. Consequently, 2 regions that were methylated before 5-Aza-2'-deoxycytidine treatment were demethylated in LN319 after the treatment, while those regions were persistently demethylated in AS. These 2 regions corresponded with sites defined as promoter regions by Luciferase assay. Taken together, it was suggested that ST8SIA1 gene is regulated by DNA methylation at the promoter regions, leading to the regulation of tumor phenotypes.

神经节苷脂在神经系统和一些神经外胚层来源的肿瘤中高水平表达,并发挥关键作用。然而,负责神经节苷脂合成的糖基转移酶基因的调控机制尚不清楚。在这项研究中,我们分析了GD3合成酶(ST8SIA1)启动子区域的DNA甲基化模式,以及mRNA水平和神经节苷脂表达。在5个细胞系中,4个细胞系在5-aza- dc处理后相关基因的表达水平发生了变化。LN319在5-aza-dC处理后St8sia1表达上调,b系列神经节苷类蛋白表达增加,而星形细胞瘤细胞株AS在5-Aza-2′-脱氧胞苷处理前后持续高表达St8sia1和b系列神经节苷类蛋白。利用这2个细胞系,通过亚硫酸测序分析了该基因启动子区域的DNA甲基化模式。因此,在5-Aza-2'-脱氧胞苷处理前甲基化的2个区域在LN319处理后被去甲基化,而这些区域在AS中持续去甲基化。这两个区域对应于荧光素酶测定定义为启动子区域的位点。综上所述,我们认为ST8SIA1基因在启动子区域受DNA甲基化调控,从而调控肿瘤表型。
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引用次数: 0
Alkali-labile gangliosides. Alkali-labile神经节甘脂。
IF 3 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1007/s10719-023-10103-0
Laura Mauri, Sandro Sonnino

The structure and properties of a group of gangliosides modified by mild alkaline treatment are discussed. We will present the occurrence and the structure of gangliosides carrying the N-acetyneuraminic acid O-acetylated in position 9, the Neu5,9Ac2, and of gangliosides carrying a sialic acid that forms a lactone ring. Starting from biochemical data we will discuss the possible biochemical role played by these gangliosides in the processes of cell signaling and maintenance of brain functions.

讨论了一类经温和碱处理的神经节苷类化合物的结构和性质。我们将介绍携带位置9 o乙酰化的n -乙酰神经氨酸的神经节苷脂的发生和结构,Neu5,9Ac2,以及携带形成内酯环的唾液酸的神经节苷脂。从生化数据出发,我们将讨论这些神经节苷脂在细胞信号传导和脑功能维持过程中可能发挥的生化作用。
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引用次数: 0
Serum total carbohydrates, conjugated carbohydrates and total protein glycation index in diabetes mellitus. 糖尿病患者血清总碳水化合物、共轭碳水化合物及总蛋白糖化指数。
IF 3 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1007/s10719-023-10115-w
Sepideh Hosseini, Saeid Abediankenari, Mehdi Rasouli

Background: Diabetes mellitus is defined according to fasting blood glucose and clinical signs. But, the markers of glycation have been used recently as a criterion to diagnose and monitor the therapy.

Objectives: To measure serum total- and conjugated- saccharides and to define the new marker as serum total protein glycation index (sTPGI ) for diabetes.

Design and methods: The study population consisted of 172 subjects who were divided to control and diabetic cases. Serum total and conjugated saccharides were measured and sTPGI was defined to discriminate serum glycosylated and glycated saccharides.

Results: Patients with diabetes compared with the controls had increased levels of serum (free) glucose, HbA1c, serum total carbohydrates, total conjugated carbohydrates and sTPGI. All three indices of serum carbohydrates showed significant positive correlation with serum glucose, HbA1c and diabetes. The equations: sTPGI = 0.12 Glucose (mg/dL) + 12 and sTPGI = 3.5HbA1c (%) + 5, were deduced for the association of sTPGI with serum free glucose and HbA1c. In ROC analysis, both HbA1c (AUC = 0.965, p ≤ 0.001) and sTPGI (AUC = 0.734, p ≤ 0.001) had strong and significant efficiency to discriminate diabetic cases from control subjects.

Conclusions: The results confirm that sTPGI obtained by indirect assay has high significant efficiency comparable to HbA1c to diagnose diabetes. sTPGI relative to HbA1c indicates the mean level of glycaemia over a shorter period of about one month so it responds more quickly to changes in therapy.

背景:糖尿病是根据空腹血糖和临床体征来定义的。但是,糖化标记物最近已被用作诊断和监测治疗的标准。目的:测定血清总糖和结合糖,并确定糖尿病血清总蛋白糖化指数(sTPGI)作为新的标志物。设计和方法:研究人群包括172名受试者,分为对照组和糖尿病患者。测定血清总糖和结合糖,定义sTPGI以区分血清糖基化糖和糖基化糖。结果:与对照组相比,糖尿病患者血清(游离)葡萄糖、HbA1c、血清总碳水化合物、总共轭碳水化合物和sTPGI水平升高。血清碳水化合物三项指标均与血糖、糖化血红蛋白及糖尿病呈显著正相关。推导出sTPGI与血清游离葡萄糖和HbA1c的相关性公式:sTPGI = 0.12 Glucose (mg/dL) + 12, sTPGI = 3.5HbA1c(%) + 5。在ROC分析中,HbA1c (AUC = 0.965, p≤0.001)和sTPGI (AUC = 0.734, p≤0.001)对区分糖尿病患者和对照组具有很强且显著的效率。结论:间接测定法获得的sTPGI与HbA1c诊断糖尿病的效率相当。sTPGI相对于HbA1c表明在较短的时间内大约一个月的平均血糖水平,因此它对治疗变化的反应更快。
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引用次数: 0
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Glycoconjugate Journal
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