Pub Date : 2024-09-01Epub Date: 2024-06-24DOI: 10.1080/17460913.2024.2358653
Theodoros Karampatakis, Eleni Kandilioti, Helen Katsifa, Anna Nikopoulou, Celine Harmanus, Katerina Tsergouli, Ed Kuijper, Melina Kachrimanidou
Aim: The aim was to highlight the incidence and epidemiology of C. difficile infections (CDI) in a tertiary Greek hospital during the COVID-19 pandemic.Methods: A single-center prospective observational cohort study was conducted (October 2021 until April 2022). 125 C. difficile isolates were cultured from hospitalized patients stool samples and screened by PCR for toxin A (tcdA), toxin B (tcdB), binary toxin (cdtA and cdtB) genes and the regulating gene of tcdC.Results: The incidence of CDI increased to 13.1 infections per 10,000 bed days. The most common PCR ribotypes identified included hypervirulent RT027-related RT181 (73.6%), presumably hypervirulent RT126 (8.0%) and toxin A negative RT017 (7.2%).Conclusion: Although the incidence of CDI increased significantly, the CDI epidemiology remained stable.
{"title":"<i>Clostridioides difficile</i> infection epidemiology during the COVID-19 pandemic in Greece.","authors":"Theodoros Karampatakis, Eleni Kandilioti, Helen Katsifa, Anna Nikopoulou, Celine Harmanus, Katerina Tsergouli, Ed Kuijper, Melina Kachrimanidou","doi":"10.1080/17460913.2024.2358653","DOIUrl":"10.1080/17460913.2024.2358653","url":null,"abstract":"<p><p><b>Aim:</b> The aim was to highlight the incidence and epidemiology of <i>C. difficile</i> infections (CDI) in a tertiary Greek hospital during the COVID-19 pandemic.<b>Methods:</b> A single-center prospective observational cohort study was conducted (October 2021 until April 2022). 125 <i>C. difficile</i> isolates were cultured from hospitalized patients stool samples and screened by PCR for toxin A (<i>tcdA</i>), toxin B (<i>tcdB</i>), binary toxin (<i>cdtA</i> and <i>cdtB</i>) genes and the regulating gene of <i>tcdC</i>.<b>Results:</b> The incidence of CDI increased to 13.1 infections per 10,000 bed days. The most common PCR ribotypes identified included hypervirulent RT027-related RT181 (73.6%), presumably hypervirulent RT126 (8.0%) and toxin A negative RT017 (7.2%).<b>Conclusion:</b> Although the incidence of CDI increased significantly, the CDI epidemiology remained stable.</p>","PeriodicalId":12773,"journal":{"name":"Future microbiology","volume":" ","pages":"1119-1127"},"PeriodicalIF":2.5,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11529203/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141446067","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-12Epub Date: 2024-08-07DOI: 10.2217/fmb-2023-0220
Min Zhang, Yang Wang, Yong Gan
Akkermansia muciniphila (A. muciniphila) is a 'star strain' that has attracted much attention in recent years. A. muciniphila can effectively regulate host metabolism, significantly affect host immune function, and play an important role in balancing host health and disease. As one of the organs most closely related to the gut (the two can communicate through the hepatic portal vein and bile duct system), liver is widely affected by intestinal microorganisms. A growing body of evidence suggests that A. muciniphila may alleviate liver-related diseases by improving the intestinal barrier, energy metabolism and regulating inflammation through its protein components and metabolites. This paper systematically reviews the key roles of A. muciniphila and its derivatives in maintaining liver health and improving liver disease.
{"title":"The potential role of <i>Akkermansia muciniphila</i> in liver health.","authors":"Min Zhang, Yang Wang, Yong Gan","doi":"10.2217/fmb-2023-0220","DOIUrl":"10.2217/fmb-2023-0220","url":null,"abstract":"<p><p><i>Akkermansia muciniphila</i> (<i>A. muciniphila</i>) is a 'star strain' that has attracted much attention in recent years. <i>A. muciniphila</i> can effectively regulate host metabolism, significantly affect host immune function, and play an important role in balancing host health and disease. As one of the organs most closely related to the gut (the two can communicate through the hepatic portal vein and bile duct system), liver is widely affected by intestinal microorganisms. A growing body of evidence suggests that <i>A. muciniphila</i> may alleviate liver-related diseases by improving the intestinal barrier, energy metabolism and regulating inflammation through its protein components and metabolites. This paper systematically reviews the key roles of <i>A. muciniphila</i> and its derivatives in maintaining liver health and improving liver disease.</p>","PeriodicalId":12773,"journal":{"name":"Future microbiology","volume":" ","pages":"1081-1096"},"PeriodicalIF":2.5,"publicationDate":"2024-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11323942/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141897286","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-12Epub Date: 2024-07-17DOI: 10.1080/17460913.2024.2357966
Joseph M Blondeau, Keith MacKenzie, Ryan McDonald
We report a case of Vandammella animalimorsus in an adult female patient following a cat scratch/bite. Animal bite/scratches may lead to zoonotic transmission of bacteria that subsequently lead to infection. Wound management and antimicrobial therapy is often necessary. The organism was initially misidentified as Neisseria animaloris/zoodegmatis and highlights the difficulty of correctly identifying some bacteria in clinical microbiology laboratories.
{"title":"Recovery of <i>Vandammella animalimorsus</i> from an immunocompetent female patient following cat bite to the lower leg.","authors":"Joseph M Blondeau, Keith MacKenzie, Ryan McDonald","doi":"10.1080/17460913.2024.2357966","DOIUrl":"10.1080/17460913.2024.2357966","url":null,"abstract":"<p><p>We report a case of <i>Vandammella animalimorsus</i> in an adult female patient following a cat scratch/bite. Animal bite/scratches may lead to zoonotic transmission of bacteria that subsequently lead to infection. Wound management and antimicrobial therapy is often necessary. The organism was initially misidentified as <i>Neisseria animaloris/zoodegmatis</i> and highlights the difficulty of correctly identifying some bacteria in clinical microbiology laboratories.</p>","PeriodicalId":12773,"journal":{"name":"Future microbiology","volume":" ","pages":"1049-1054"},"PeriodicalIF":2.5,"publicationDate":"2024-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11323865/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141626572","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-12Epub Date: 2024-06-24DOI: 10.1080/17460913.2024.2353486
Murat Karamese
{"title":"Letter in reply: before biomolecules are claimed as biomarkers of COVID-19, their criteria must be met.","authors":"Murat Karamese","doi":"10.1080/17460913.2024.2353486","DOIUrl":"10.1080/17460913.2024.2353486","url":null,"abstract":"","PeriodicalId":12773,"journal":{"name":"Future microbiology","volume":" ","pages":"1047-1048"},"PeriodicalIF":2.5,"publicationDate":"2024-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11323856/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141446068","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-12Epub Date: 2024-07-04DOI: 10.1080/17460913.2024.2353481
Josef Finsterer
{"title":"Letter to the editor: before molecules are claimed as biomarkers of COVID-19, their criteria must be met.","authors":"Josef Finsterer","doi":"10.1080/17460913.2024.2353481","DOIUrl":"10.1080/17460913.2024.2353481","url":null,"abstract":"","PeriodicalId":12773,"journal":{"name":"Future microbiology","volume":" ","pages":"1045-1046"},"PeriodicalIF":2.5,"publicationDate":"2024-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11323946/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141534305","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sporotrichosis, a mycosis resulting from cutaneous or subcutaneous infection with the dimorphic fungus Sporothrix, has been reported in China, particularly in the northeast region. In this review, we conducted a thorough examination of the recent advancements in sporotrichosis in China, encompassing aspects such as etiology, epidemiology, pathogenesis, clinical manifestations, diagnosis and treatment strategies. Within the Chinese context, fixed cutaneous sporotrichosis represents the prevailing clinical manifestation. Fungal culture stands as the gold standard for diagnosing sporotrichosis, while polymerase chain reaction techniques can enhance both the specificity and sensitivity of diagnosis. Besides conventional systemic antifungal agents, alternative modalities such as Chinese herbal medicines, photodynamic therapy and laser therapy show potential efficacy against sporotrichosis.
{"title":"Current situation of sporotrichosis in China.","authors":"Shuqiong Cheng, Siqi Zheng, Meizhen Zhong, Keshav Raj Gyawali, Wen Pan, Meinian Xu, Huaiqiu Huang, Xiaowen Huang","doi":"10.1080/17460913.2024.2352283","DOIUrl":"10.1080/17460913.2024.2352283","url":null,"abstract":"<p><p>Sporotrichosis, a mycosis resulting from cutaneous or subcutaneous infection with the dimorphic fungus <i>Sporothrix</i>, has been reported in China, particularly in the northeast region. In this review, we conducted a thorough examination of the recent advancements in sporotrichosis in China, encompassing aspects such as etiology, epidemiology, pathogenesis, clinical manifestations, diagnosis and treatment strategies. Within the Chinese context, fixed cutaneous sporotrichosis represents the prevailing clinical manifestation. Fungal culture stands as the gold standard for diagnosing sporotrichosis, while polymerase chain reaction techniques can enhance both the specificity and sensitivity of diagnosis. Besides conventional systemic antifungal agents, alternative modalities such as Chinese herbal medicines, photodynamic therapy and laser therapy show potential efficacy against sporotrichosis.</p>","PeriodicalId":12773,"journal":{"name":"Future microbiology","volume":" ","pages":"1097-1106"},"PeriodicalIF":2.5,"publicationDate":"2024-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11323943/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141758261","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-12Epub Date: 2024-06-20DOI: 10.1080/17460913.2024.2357994
Jing Luo, Rui Xie, Chongxi Bao, Jinyan Lin, Yang Xu, Xuexin Yan, Zhen Yang, Li Feng, Jianing Wu, Dan Chen, Zaiqing He, Jinliang Kong
Aim: To investigate the impact of human herpes virus (HHV) carriage on lung microbiota, and its correlation with clinical features and laboratory indicators in patients.Methods: Retrospective analysis was conducted on 30 outpatient lung infection cases, which were divided into HHV (n = 15) and non-HHV (n = 15) groups. mNGS detected microbial composition. Microbial diversity and abundance were tested using Shannon and Chao1 indices. Their relationship with laboratory indicators were explored.Results: Significant differences in microbial abundance and distribution were found between two groups (p < 0.05). Moreover, HHV group showed negative correlations (p < 0.05) between Prevotella, Porphyromonas, Streptococcus and basophil/eosinophil percentages.Conclusion:HHV carriage impacts lung microbiota, emphasizing the need for clinicians to pay attention to HHV reactivation in outpatient lung infection patients.
{"title":"Analysis of pulmonary microecology and clinical characteristics of patients carrying human herpesvirus.","authors":"Jing Luo, Rui Xie, Chongxi Bao, Jinyan Lin, Yang Xu, Xuexin Yan, Zhen Yang, Li Feng, Jianing Wu, Dan Chen, Zaiqing He, Jinliang Kong","doi":"10.1080/17460913.2024.2357994","DOIUrl":"10.1080/17460913.2024.2357994","url":null,"abstract":"<p><p><b>Aim:</b> To investigate the impact of human herpes virus (<i>HHV</i>) carriage on lung microbiota, and its correlation with clinical features and laboratory indicators in patients.<b>Methods:</b> Retrospective analysis was conducted on 30 outpatient lung infection cases, which were divided into <i>HHV</i> (n = 15) and non-<i>HHV</i> (n = 15) groups. mNGS detected microbial composition. Microbial diversity and abundance were tested using Shannon and Chao1 indices. Their relationship with laboratory indicators were explored.<b>Results:</b> Significant differences in microbial abundance and distribution were found between two groups (p < 0.05). Moreover, HHV group showed negative correlations (p < 0.05) between <i>Prevotella</i>, <i>Porphyromonas</i>, <i>Streptococcus</i> and basophil/eosinophil percentages.<b>Conclusion:</b> <i>HHV</i> carriage impacts lung microbiota, emphasizing the need for clinicians to pay attention to <i>HHV</i> reactivation in outpatient lung infection patients.</p>","PeriodicalId":12773,"journal":{"name":"Future microbiology","volume":" ","pages":"1071-1080"},"PeriodicalIF":2.5,"publicationDate":"2024-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11323855/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141426698","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Aim: Animal models of fatal pneumonia caused by Streptococcus pneumoniae (Spn) have not been reliably generated using many strains of less virulent serotypes.Materials & methods: Pulmonary infection of a less virulent Spn serotype1 strain in the immunocompetent mice was established via the intratracheal aerosolization (ITA) route. The survival, local and systemic bacterial spread, pathological changes and inflammatory responses of this model were compared with those of mice challenged via the intratracheal instillation, intranasal instillation and intraperitoneal injection routes.Results: ITA and intratracheal instillation both induced fatal pneumonia; however, ITA resulted in better lung bacterial deposition and distribution, pathological homogeneity and delivery efficiency.Conclusion: ITA is an optimal route for developing animal models of severe pulmonary infections.
{"title":"Mice fatal pneumonia model induced by less-virulent <i>Streptococcus pneumoniae</i> via intratracheal aerosolization.","authors":"Jiazhen Wang, Lingfei Hu, Zhijun Zhang, Chengyu Sui, Xiaoyu Zhu, Chengxi Wu, Lili Zhang, Meng Lv, Wenhui Yang, Dongsheng Zhou, Zhengling Shang","doi":"10.1080/17460913.2024.2355738","DOIUrl":"10.1080/17460913.2024.2355738","url":null,"abstract":"<p><p><b>Aim:</b> Animal models of fatal pneumonia caused by <i>Streptococcus pneumoniae</i> (<i>Spn</i>) have not been reliably generated using many strains of less virulent serotypes.<b>Materials & methods:</b> Pulmonary infection of a less virulent <i>Spn</i> serotype1 strain in the immunocompetent mice was established via the intratracheal aerosolization (ITA) route. The survival, local and systemic bacterial spread, pathological changes and inflammatory responses of this model were compared with those of mice challenged via the intratracheal instillation, intranasal instillation and intraperitoneal injection routes.<b>Results:</b> ITA and intratracheal instillation both induced fatal pneumonia; however, ITA resulted in better lung bacterial deposition and distribution, pathological homogeneity and delivery efficiency.<b>Conclusion:</b> ITA is an optimal route for developing animal models of severe pulmonary infections.</p>","PeriodicalId":12773,"journal":{"name":"Future microbiology","volume":" ","pages":"1055-1070"},"PeriodicalIF":2.5,"publicationDate":"2024-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11323861/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141446070","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-12Epub Date: 2024-08-06DOI: 10.1080/17460913.2024.2357971
Yunfei Ye, Yin He Richard Sun, Fidelma Fitzpatrick, Catherine M Greene
{"title":"microRNAs: a new class of endogenous antimicrobials for the treatment of infections in cystic fibrosis and beyond.","authors":"Yunfei Ye, Yin He Richard Sun, Fidelma Fitzpatrick, Catherine M Greene","doi":"10.1080/17460913.2024.2357971","DOIUrl":"10.1080/17460913.2024.2357971","url":null,"abstract":"","PeriodicalId":12773,"journal":{"name":"Future microbiology","volume":" ","pages":"1041-1043"},"PeriodicalIF":2.5,"publicationDate":"2024-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11323858/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141893256","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-02Epub Date: 2024-04-29DOI: 10.2217/fmb-2023-0263
Seetha Lakshmi Rajangam, Manoj Kumar Narasimhan
A higher prevalence of Acinetobacter baumannii infections and mortality rate has been reported recently in hospital-acquired infections (HAI). The biofilm-forming capability of A. baumannii makes it an extremely dangerous pathogen, especially in device-associated hospital-acquired infections (DA-HAI), thereby it resists the penetration of antibiotics. Further, the transmission of the SARS-CoV-2 virus was exacerbated in DA-HAI during the epidemic. This review specifically examines the complex interconnections between several components and genes that play a role in the biofilm formation and the development of infections. The current review provides insights into innovative treatments and therapeutic approaches to combat A. baumannii biofilm-related infections, thereby ultimately improving patient outcomes and reducing the burden of HAI.
据报道,最近在医院获得性感染(HAI)中,鲍曼不动杆菌的感染率和死亡率都有所上升。鲍曼不动杆菌的生物膜形成能力使其成为一种极其危险的病原体,尤其是在与设备相关的医院获得性感染(DA-HAI)中,因此它能抵抗抗生素的渗透。此外,在疫情期间,SARS-CoV-2 病毒的传播在 DA-HAI 中加剧。本综述特别探讨了在生物膜形成和感染发展过程中发挥作用的多个成分和基因之间复杂的相互联系。本综述深入探讨了抗击鲍曼不动杆菌生物膜相关感染的创新疗法和治疗方法,从而最终改善患者预后并减轻 HAI 负担。
{"title":"Current treatment strategies for targeting virulence factors and biofilm formation in <i>Acinetobacter baumannii</i>.","authors":"Seetha Lakshmi Rajangam, Manoj Kumar Narasimhan","doi":"10.2217/fmb-2023-0263","DOIUrl":"10.2217/fmb-2023-0263","url":null,"abstract":"<p><p>A higher prevalence of <i>Acinetobacter baumannii</i> infections and mortality rate has been reported recently in hospital-acquired infections (HAI). The biofilm-forming capability of <i>A. baumannii</i> makes it an extremely dangerous pathogen, especially in device-associated hospital-acquired infections (DA-HAI), thereby it resists the penetration of antibiotics. Further, the transmission of the SARS-CoV-2 virus was exacerbated in DA-HAI during the epidemic. This review specifically examines the complex interconnections between several components and genes that play a role in the biofilm formation and the development of infections. The current review provides insights into innovative treatments and therapeutic approaches to combat <i>A. baumannii</i> biofilm-related infections, thereby ultimately improving patient outcomes and reducing the burden of HAI.</p>","PeriodicalId":12773,"journal":{"name":"Future microbiology","volume":" ","pages":"941-961"},"PeriodicalIF":2.5,"publicationDate":"2024-07-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11290764/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140850002","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}