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In silico approach revealed the membrane receptor PHO36 as a new target for synthetic anticandidal peptides. 硅学方法揭示了膜受体 PHO36 是合成抗念珠菌肽的新靶标。
IF 2.5 4区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-09-23 DOI: 10.1080/17460913.2024.2398904
Francisco Es Lopes, Pedro Fn Souza, Daiane Ms Brito, Felipe P Mesquita, Raquel C Montenegro, Jackson L Amaral, José Ha Filho, Valder N Freire, Rossana A Cordeiro

Aim: Synthetic antimicrobial peptides (SAMPs) present the potential to fight systemic fungal infections. Here, the PHO36 receptor from Candida albicans was analyzed by in silico tools as a possible target for three anticandidal SAMPs: RcAlb-PepIII, PepGAT and PepKAA.Materials & methods: Molecular docking, dynamics and quantum biochemistry were employed to understand the individual contribution of amino acid residues in the interaction region.Results: The results revealed that SAMPs strongly interact with the PHO36 by multiple high-energy interactions. This is the first study to employ quantum biochemistry to describe the interactions between SAMPs and the PHO36 receptor.Conclusion: This work contributes to understanding and identifying new molecular targets with medical importance that could be used to discover new drugs against systemic fungal infections.

目的:合成抗菌肽(SAMPs)具有抗全身真菌感染的潜力。在此,我们利用硅学工具分析了白色念珠菌的 PHO36 受体,并将其作为三种抗念珠菌 SAMPs 的可能靶标:RcAlb-PepIII、PepGAT 和 PepKAA:材料与方法:材料与方法:采用分子对接、动力学和量子生物化学方法了解相互作用区氨基酸残基的各自贡献:结果表明,SAMPs 通过多种高能相互作用与 PHO36 产生了强烈的相互作用。这是首次采用量子生物化学方法描述 SAMPs 与 PHO36 受体之间相互作用的研究:结论:这项研究有助于了解和确定具有重要医学价值的新分子靶点,从而发现抗全身性真菌感染的新药物。
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引用次数: 0
Predicting of novel homoserine dehydrogenase inhibitors against Paracoccidioides brasiliensis: integrating in silico and in vitro approaches. 预测针对巴西副球孢子虫的新型高丝氨酸脱氢酶抑制剂:综合利用硅学和体外方法。
IF 2.5 4区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-09-13 DOI: 10.1080/17460913.2024.2398332
Jovana Chiapetti Tartari, Asif Khan, João Gabriel da Silva Andrade, Francielli Abigail Vilugron Rodrigues, Paulo Sérgio Alves Bueno, Diego de Souza Lima, Fernanda Canduri, Gisele de Freitas Gauze, Érika Seki Kioshima, Flavio Augusto Vicente Seixas

Aim: To search for potential inhibitors to homoserine dehydrogenase (HSD) in Paracoccidioides brasiliensis the causative agent of paracoccidioidomycosis, an infection with a high mortality rate in Brazil.Materials & methods: The enzyme was modeled and used in the virtual screening of the compounds. The library was first screened by the Autodock, in which 66 molecules were better ranked than substrate, and then, also evaluated by the Molegro and Gold programs.Results: The HS23 and HS87 molecules were selected in common by the three programs, and ADME/Tox evaluation indicates they are not toxic. The molecular dynamics of PbHSD bonded to ligands showed stable complexes until 50 ns. To validate the results, compounds were purchased for assays of minimum inhibitory concentration (MIC), minimum fungicidal concentration (MFC), synergic profile with Amphotericin B (AmB) and cytotoxicity. The two molecules presented MIC of 32 μg/ml and MFC of 64 μg/ml against the P. brasiliensis (strain Pb18). They also showed synergistic activity with AmB and a lack of toxicity against Hela and Vero cell lines.Conclusion: These results suggest that the HS23 and HS87 are promising candidates as PbHSD inhibitors and may be used as hits for the development of new drugs against paracoccidioidomycosis.

目的:寻找巴西副球孢子菌病(Paracoccidioidomycosis)的潜在同丝氨酸脱氢酶(HSD)抑制剂:对酶进行建模,并将其用于化合物的虚拟筛选。首先用 Autodock 对化合物库进行筛选,其中 66 个分子的排名优于底物,然后用 Molegro 和 Gold 程序进行评估:结果:HS23 和 HS87 分子被三个程序共同选中,并且 ADME/Tox 评估表明它们没有毒性。与配体结合的 PbHSD 的分子动力学显示,在 50 毫微秒之前,复合物是稳定的。为了验证结果,购买了化合物进行最低抑菌浓度(MIC)、最低杀菌浓度(MFC)、与两性霉素 B(AmB)的协同作用以及细胞毒性的检测。这两种分子对巴西痢疾杆菌(Pb18 株)的 MIC 为 32 μg/ml,MFC 为 64 μg/ml。它们还显示出与 AmB 的协同活性,且对 Hela 和 Vero 细胞系无毒性:这些结果表明,HS23 和 HS87 是很有希望的 PbHSD 抑制剂候选物,可作为开发抗副球孢子菌病新药的靶点。
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引用次数: 0
Application of microbial enzymes in medicine and industry: current status and future perspectives. 微生物酶在医药和工业中的应用:现状和未来展望。
IF 2.5 4区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-09-13 DOI: 10.1080/17460913.2024.2398337
Atieh Darbandi, Zahra Elahi, Leila Dadgar-Zankbar, Fatemeh Ghasemi, Naser Kakavandi, Sajjad Jafari, Talieh Darbandi, Roya Ghanavati

Microbes are a major source of enzymes due to their ability to be mass-cultivated and genetically modified. Compared with plant and animal enzymes, microbial enzymes are more stable and active. Enzymes are generally classified into six classes based on their reaction, substrate specificity and mechanism of action. In addition to their application in medicine for treating diseases, these compounds are used as anti-inflammatory, thrombolytic and digestive agents. However, challenges such as immunogenicity, tissue specificity and short in vivo half-life make clinical trials complex. Enzymes are metabolic catalysts in industry and their production and extraction must be optimized to preserve profitability due to rising demand. The present review highlights the increasing importance of bacterial enzymes in industry and medicine and explores methods for their production, extraction and purification.

微生物是酵素的主要来源,因为它们能够进行大规模培养和基因改造。与植物和动物酵素相比,微生物酵素更稳定、更活跃。根据酶的反应、底物特异性和作用机制,酶一般可分为六类。除了在医学上用于治疗疾病外,这些化合物还可用作消炎药、溶栓药和消化药。然而,免疫原性、组织特异性和体内半衰期短等挑战使得临床试验变得复杂。酶是工业中的代谢催化剂,由于需求不断增加,必须优化酶的生产和提取,以保持盈利能力。本综述强调了细菌酶在工业和医学中日益增长的重要性,并探讨了细菌酶的生产、提取和纯化方法。
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引用次数: 0
The anti-biofilm efficacy of copper and zinc doped borate bioactive glasses. 掺杂铜和锌的硼酸盐生物活性玻璃的抗生物膜功效。
IF 2.5 4区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-09-13 DOI: 10.1080/17460913.2024.2398410
Sarah Fakher, David Westenberg

Aim: Healthcare-acquired infections (HAIs) pose significant challenges in medical settings due to their resistance to conventional treatment methods. The role of bacterial biofilms in exacerbating these infections is well-documented, making HAIs particularly difficult to eradicate. Despite numerous research efforts, an effective solution to combat these infections remains elusive. This study aims to explore the potential of metal-ion (copper and zinc) doped borate bioactive glasses (BBGs) as a novel treatment modality to inhibit bacterial species commonly implicated in HAIs: Staphylococcus epidermidis, Escherichia coli, and Pseudomonas aeruginosa.Methods: The study analyzed the efficacy of both direct and indirect applications of BBGs on severe biofilms pre-formed under static and dynamic growth conditions; a comprehensive predictive modeling was developed, simulating diverse clinically relevant conditions.Results: Results demonstrate more than 4 log reduction in bacterial growth within 2 days for direct application and 3 days for indirect application of copper and zinc-doped BBGs. These findings were consistent across the three bacterial species, in both static and dynamic conditions.Conclusion: Copper and zinc-doped BBGs can be an effective approach in combating HAIs complicated by biofilms.

目的:医疗机构获得性感染(HAIs)对传统治疗方法具有抗药性,这给医疗机构带来了巨大挑战。细菌生物膜在加剧这些感染方面的作用已得到充分证实,这使得 HAIs 尤为难以根除。尽管开展了大量研究工作,但对付这些感染的有效解决方案仍然遥遥无期。本研究旨在探索掺杂金属离子(铜和锌)的硼酸盐生物活性玻璃(BBGs)作为一种新型治疗方法的潜力,以抑制 HAIs 中常见的细菌种类:方法:研究分析了在静态和动态生长条件下直接和间接应用 BBGs 对预先形成的严重生物膜的疗效;开发了一个综合预测模型,模拟各种临床相关条件:结果:结果表明,直接使用掺铜和掺锌 BBG 两天和间接使用 3 天内,细菌生长量分别减少了 4 个对数值以上。在静态和动态条件下,这些结果在三种细菌中都是一致的:结论:掺铜和掺锌 BBGs 可作为一种有效的方法来应对由生物膜引起的 HAIs。
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引用次数: 0
Establishment and evaluation of MIRA-qPCR assay for the rapid and sensitively detection of Mycoplasma pneumoniae. 建立并评估用于快速灵敏检测肺炎支原体的 MIRA-qPCR 检测方法。
IF 2.5 4区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-09-11 DOI: 10.1080/17460913.2024.2398886
Qiao Qiao, Yi-Yue Ge, Xiao-Juan Zhu, Kang-Chen Zhao, Yin Chen, Lun-Biao Cui, Tao Wu

Aim: Mycoplasma pneumoniae (MP) is a common cause of respiratory infections, and its incidence has increased post-COVID-19 due to "immune debt." Real-time quantitative polymerase chain reaction (qPCR) is the standard for detecting MP, but it has a lengthy detection time. This study aimed to establish a highly sensitive rapid detection method for MP.Materials & methods: We developed an integrated assay combining multienzyme isothermal rapid amplification (MIRA) with qPCR, referred to as MIRA-qPCR, for the rapid detection of MP, delivering results within approximately 40 min.Results: The analytic sensitivity of the MIRA-qPCR assay was 10 copies per reaction, and it exhibited no cross-reactivity with other respiratory pathogens, ensuring high specificity. Clinical sample analysis demonstrated higher sensitivity for MIRA-qPCR compared to qPCR reported in the literature, and 100% concordance with commercial qPCR kit.Conclusion: The MIRA-qPCR method established in this study is a promising tool for the clinical detection of MP, offering significant advantages for the rapid diagnosis of MP infections.

目的:肺炎支原体(MP)是呼吸道感染的常见病因,COVID-19 后由于 "免疫债务",其发病率有所上升。实时定量聚合酶链反应(qPCR)是检测肺炎支原体的标准方法,但其检测时间较长。本研究旨在建立一种高灵敏度的 MP 快速检测方法:我们开发了一种结合多酶等温快速扩增(MIRA)和 qPCR 的综合检测方法,简称 MIRA-qPCR,用于快速检测 MP,可在约 40 分钟内得出结果:结果:MIRA-qPCR 分析法的分析灵敏度为每次反应 10 个拷贝,与其他呼吸道病原体无交叉反应,确保了高特异性。临床样本分析表明,与文献报道的 qPCR 相比,MIRA-qPCR 的灵敏度更高,与商用 qPCR 试剂盒的一致性达到 100%:本研究建立的 MIRA-qPCR 方法是一种很有前途的 MP 临床检测工具,在快速诊断 MP 感染方面具有显著优势。
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引用次数: 0
A case of lung and fungus ball lesions associated with Cladosporium Subcinereum A48 in a diabetic patient. 一例糖尿病患者的肺部和真菌球病变与亚金孢子菌 A48 有关。
IF 2.5 4区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-09-11 DOI: 10.1080/17460913.2024.2392454
Abozar Nasiri-Jahrodi, Mehdi Barati, Fatemeh-Maryam Sheikholeslami, Mona Fani, Azin Nikoozadeh

This study reports the first case of lung and fungus ball lesions caused by Cladosporium subcinereum A48. A rural diabetic woman infected by C. subcinereum A48, presented with fever and hemoptysis. CT scans, bronchoalveolar lavage, culture and molecular methods were used to evaluate and confirm the disease. Our patient had not taken insulin during the last few months of her life which probably caused acidosis and a decrease in the patient's immunity level, resulting in penetration and formation of a fungal in the lung.

本研究报告了首例由亚真菌Cladosporium subcinereum A48引起的肺部和真菌球病变。一名农村糖尿病妇女感染了亚链格孢子菌 A48,表现为发热和咯血。我们采用了 CT 扫描、支气管肺泡灌洗、培养和分子方法对该病进行了评估和确诊。我们的患者在生命的最后几个月没有服用胰岛素,这可能导致了酸中毒和患者免疫力的下降,从而导致真菌在肺部的渗透和形成。
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引用次数: 0
Polymyxin B adjuvants against polymyxin B- and carbapenem-resistant Gram-negative bacteria. 针对耐多粘菌素 B 和碳青霉烯类革兰氏阴性菌的多粘菌素 B 佐剂。
IF 2.5 4区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-09-11 DOI: 10.1080/17460913.2024.2398312
João Paulo Salvaterra Pasquini, Paula Assis Queiroz, Pedro Henrique Rodrigues do Amaral, Thalita Camilo da Silva, Patricia de Souza Bonfim Mendonça, Fábio Vandresen, João Pedro Carvalho Ceolis, Regiane Bertin de Lima Scodro, Katiany Rizzieri Caleffi-Ferracioli, Rosilene Fressatti Cardoso, Vera Lúcia Dias Siqueira

Aim: Polymyxin B (PMB) is one of the few therapeutic options for treating infections caused by carbapenem-resistant Gram-negative bacteria (CR-GNB). However, the emergence of PMB-resistant CR-GNB strains has prompted the exploration of antibiotic adjuvants as potential therapeutic avenues. Thus, this study evaluates the potential of 3,5-dinitrobenzoic acid derivatives (DNH01, DNH11, DNH13 and DNH20) and isoniazid-N-acylhydrazones (INZ1-7, INZ9 and INZ11) as adjuvants to enhance PMB efficacy against CR-GNB.Materials & methods: MIC, MBC and drug combination assays were conducted using multidrug-resistant clinical isolates of Enterobacterales and Acinetobacter baumannii. In addition, the effects of PMB and PMB + DNH derivatives were assessed through flow cytometry and scanning electron microscopy (SEM).Results: DNH01, DNH11 and DNH20, unlike the INH-acylhydrazones, significantly restored PMB activity (MIC ≤ 2 μg/ml) in 80% of the tested isolates. Flow cytometry and SEM assays confirmed that DNH derivatives rescued the activity of PMB, yielding results comparable to those expected for PMB alone but at 256-fold lower concentrations.Conclusion: These findings suggest DNH derivatives hold substantial promise as PMB adjuvants to combat PMB-resistant CR-GNB infections.

目的:多粘菌素 B(PMB)是治疗耐碳青霉烯类革兰氏阴性菌(CR-GNB)感染的少数几种疗法之一。然而,耐 PMB 的 CR-GNB 菌株的出现促使人们探索抗生素辅助剂作为潜在的治疗途径。因此,本研究评估了 3,5-二硝基苯甲酸衍生物(DNH01、DNH11、DNH13 和 DNH20)和异烟肼-N-酰肼(INZ1-7、INZ9 和 INZ11)作为佐剂提高 PMB 对 CR-GNB 药效的潜力:使用耐多药的肠杆菌和鲍曼不动杆菌临床分离株进行了 MIC、MBC 和药物组合试验。此外,还通过流式细胞仪和扫描电子显微镜(SEM)评估了 PMB 和 PMB + DNH 衍生物的效果:结果:与 INH-酰肼不同,DNH01、DNH11 和 DNH20 能显著恢复 80% 受测分离菌的 PMB 活性(MIC ≤ 2 μg/ml)。流式细胞仪和扫描电镜检测证实,DNH 衍生物可恢复 PMB 的活性,其结果与单独使用 PMB 的预期结果相当,但浓度低 256 倍:这些研究结果表明,DNH 衍生物作为 PMB 佐剂,在抗 PMB 型 CR-GNB 感染方面大有可为。
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引用次数: 0
Expression of Plasmodium major facilitator superfamily protein in transporters - Δ Candida identifies a drug transporter. 疟原虫主要促进剂超家族蛋白在转运体中的表达 - Δ念珠菌确定了一种药物转运体。
IF 2.5 4区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-09-05 DOI: 10.1080/17460913.2024.2389750
Preeti Maurya, Mohit Kumar, Ravi Jain, Haider Thaer Abdulhameed Almuqdadi, Harshita Singh, Aashima Gupta, Christoph Arenz, Naseem A Gaur, Shailja Singh

Aim: To assess the functional relevance of a putative Major Facilitator Superfamily protein (PF3D7_0210300; 'PfMFSDT') as a drug transporter, using Candida glabrata for orthologous protein expression.Methods: Complementary Determining Sequence encoding PfMFSDT was integrated into the genome of genetically engineered C. glabrata strain MSY8 via homologous recombination, followed by assessing its functional relevance as a drug transporter.Results & conclusion: The modified C. glabrata strain exhibited plasma membrane localization of PfMFSDT and characteristics of an Major Facilitator Superfamily transporter, conferring resistance to antifungals, ketoconazole and itraconazole. The nanomolar inhibitory effects of the drugs on the intra-erythrocytic growth of Plasmodium falciparum highlight their antimalarial properties. This study proposes PfMFSDT as a drug transporter, expanding the repertoire of the currently known antimalarial 'resistome'.

目的:评估假定的主要转运体超家族蛋白(PF3D7_0210300;"PfMFSDT")作为药物转运体的功能相关性,并利用格氏念珠菌进行同源蛋白表达:方法:通过同源重组将编码 PfMFSDT 的互补确定序列整合到基因工程草履虫菌株 MSY8 的基因组中,然后评估其作为药物转运体的功能相关性:结果与结论:改造后的草履虫菌株表现出 PfMFSDT 的质膜定位和主要促进剂超家族转运体的特征,对抗真菌药酮康唑和伊曲康唑具有抗性。这些药物对恶性疟原虫红细胞内生长的纳摩尔抑制作用突出了它们的抗疟特性。这项研究认为 PfMFSDT 是一种药物转运体,扩大了目前已知的抗疟药物 "抗药性组 "的范围。
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引用次数: 0
Evaluation of amlodipine against strains of Candida spp. in planktonic cells, developing biofilms and mature biofilms. 评估氨氯地平对浮游细胞、发育中生物膜和成熟生物膜中念珠菌菌株的作用。
IF 2.5 4区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-09-05 DOI: 10.1080/17460913.2024.2390286
Helaine Almeida Queiroz, Lisandra Juvêncio da Silva, Fátima Daiana Dias Barroso, Lívia Gurgel do Amaral Valente Sá, João Batista de Andrade Neto, Érica Rayanne Motta da Costa, Leilson Carvalho de Oliveira, Amanda Dias Barbosa, Vitória Pessoa de Farias Cabral, Daniel Sampaio Rodrigues, Lara Elloyse Almeida Moreira, Bruno Coêlho Cavalcanti, Islay Lima Magalhães, Manoel Odorico de Moraes, Hélio Vitoriano Nobre Júnior, Cecília Rocha da Silva

Aim: To evaluate the antifungal activity of amlodipine against strains of Candida spp. and to its possible mechanism of action.Methods: Broth microdilution tests were used to determine the minimum inhibitory concentration, while the synergistic activity was evaluated by calculating the fractional inhibitory concentration index. The action of amlodipine against biofilms was determined using the MTT assay and its possible mechanism of action was investigated through flow cytometry tests.Results: Amlodipine showed MICs ranging from 62.5 to 250 μg/ml, in addition to action against pre-formed and forming biofilms, with reductions between 50 and 90%. Amlodipine increases the externalization of phosphatidylserine and reduces the cell viability of fungal cells, suggesting apoptosis.Conclusion: Amlodipine had good antifungal activity against planktonic cells and biofilms of Candida spp., by leading the cells to apoptosis.

目的:评估氨氯地平对念珠菌菌株的抗真菌活性及其可能的作用机制:方法:采用肉汤微稀释试验确定最低抑菌浓度,并通过计算部分抑菌浓度指数评估协同活性。使用 MTT 试验确定氨氯地平对生物膜的作用,并通过流式细胞仪测试研究其可能的作用机制:结果:氨氯地平的 MIC 值在 62.5 到 250 μg/ml 之间,此外还对已形成和正在形成的生物膜有作用,可减少 50% 到 90% 的生物膜。氨氯地平增加了磷脂酰丝氨酸的外化,降低了真菌细胞的活力,提示了细胞凋亡:结论:氨氯地平通过引导细胞凋亡,对白色念珠菌属的浮游细胞和生物膜具有良好的抗真菌活性。
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引用次数: 0
Antibiotic heteroresistance and persistence: an additional aid in hospital acquired infections by Enterococcus spp.? 抗生素异抗性和持久性:肠球菌属医院感染的又一助力?
IF 2.5 4区 生物学 Q3 MICROBIOLOGY Pub Date : 2024-09-04 DOI: 10.1080/17460913.2024.2393003
Catarina Geraldes, Luís Tavares, Solange Gil, Manuela Oliveira

Enterococcus, particularly E. faecium and E. faecalis, are responsible for many hospital-acquired infections. With their intrinsic antibiotic resistance and ability to form biofilms, enterococcal infections are already challenging to manage. However, when heterogenous populations are present, such as those exhibiting heteroresistance and persistence, the complexity of these infections increases exponentially not only due to their treatment but also due to their difficult diagnosis. In this study, we provide a summary of the current understanding of both heteroresistance and persistence in terms of mechanisms, diagnosis and treatment and subsequently review recent literature pertaining to these susceptibility types specifically in enterococci.

肠球菌,特别是粪肠球菌和粪肠球菌,是许多医院感染的罪魁祸首。由于肠球菌本身具有抗生素耐药性并能形成生物膜,因此肠球菌感染的管理已经非常具有挑战性。然而,当出现异源种群时,如那些表现出异抗性和持久性的种群,这些感染的复杂性就会成倍增加,这不仅是由于治疗的原因,也是由于诊断的困难。在本研究中,我们从机制、诊断和治疗等方面概述了目前对异抗性和持久性的认识,随后回顾了近期有关这些易感类型(特别是肠球菌)的文献。
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引用次数: 0
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Future microbiology
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