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Peperomia pellucida (L.) Kunth suppresses glycation-induced inflammatory response in human retinal pigment epithelial cell line ARPE-19 via JAK-STAT3 signaling Peperomia pellucida (L.) Kunth 通过 JAK-STAT3 信号传导抑制糖化诱导的人视网膜色素上皮细胞 ARPE-19 株的炎症反应。
IF 4.3 3区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2024-07-22 DOI: 10.1002/ardp.202400299
Keat Lam Ho, Phaik Har Yong, Siew Huah Lim, Zhi Xiang Ng

The formation of advanced glycation end product (AGE) is a risk factor for diabetic retinopathy. Since the current treatment for diabetic retinopathy is accompanied by side effects, preliminary findings have suggested Peperomia pellucida (L.) Kunth as a potential alternative therapeutic option for diabetic retinopathy. This study aimed to elucidate the anti-inflammatory mechanism of P. pellucida in the AGE-stimulated human retinal pigment epithelial cell line ARPE-19. Phytochemical analysis revealed phenylpronanoids, terpenes, and fatty acids in P. pellucida. Through in vitro cell viability assay, the P. pellucida methanolic extract (IC50 = 8.70 mg/mL) and ethyl acetate fraction (IC50 = 7.34 mg/mL) were considered as non toxic for ARPE-19. AGE induced an inflammatory response in ARPE-19 by upregulating the gene (2.4–5.8-fold) and protein (1.4–2.3-fold) expression of signal transducer and activator of transcription 3 (STAT3), interleukin-8 (IL-8), monocyte chemoattractant protein-1, matrix metalloproteinase 2, and vascular endothelial growth factor. At 1.5 mg/mL, P. pellucida methanolic extract suppressed IL-8 expression (p < 0.05), implying its anti-inflammatory action at the early inflammatory stage through the Janus kinase (JAK)-STAT3 pathway. The methanolic extract also restored the ARPE-19 viability under AGE-induced inflammatory stress. The downregulation of inflammatory biomarkers along the JAK-STAT3 pathway suggested P. pellucida as a promising anti-inflammatory source for diabetic retinopathy.

高级糖化终产物(AGE)的形成是糖尿病视网膜病变的一个危险因素。由于目前治疗糖尿病视网膜病变的方法存在副作用,初步研究结果表明 Peperomia pellucida (L.) Kunth 有可能成为糖尿病视网膜病变的替代疗法。本研究旨在阐明 P. pellucida 在 AGE 刺激的人视网膜色素上皮细胞系 ARPE-19 中的抗炎机制。植物化学分析显示,黄皮中含有苯基丙酸、萜类和脂肪酸。通过体外细胞存活率测定,P. pellucida 甲醇提取物(IC50 = 8.70 mg/mL)和乙酸乙酯馏分(IC50 = 7.34 mg/mL)被认为对 ARPE-19 无毒。AGE 通过上调信号转导和转录激活因子 3(STAT3)、白细胞介素-8(IL-8)、单核细胞趋化蛋白-1、基质金属蛋白酶 2 和血管内皮生长因子的基因(2.4-5.8 倍)和蛋白(1.4-2.3 倍)表达,诱导 ARPE-19 中的炎症反应。在 1.5 毫克/毫升的浓度下,白头翁甲醇提取物可抑制 IL-8 的表达(p
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引用次数: 0
Novel 1,2,4-triazole derivatives containing the naphthalene moiety as selective butyrylcholinesterase inhibitors: Design, synthesis, and biological evaluation 含有萘分子的新型 1,2,4- 三唑衍生物作为选择性丁酰胆碱酯酶抑制剂:设计、合成和生物学评价。
IF 4.3 3区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2024-07-21 DOI: 10.1002/ardp.202400406
Ebru Koçak Aslan, Aysima Sezer, Tuba Tüylü Küçükkılınç, Erhan Palaska

Butyrylcholinesterase (BChE) is considered a promising therapeutic target for treating Alzheimer's disease due to the increase in the levels and activity of BChE in the late stage of the disease. In this study, a series of novel 1,2,4-triazole derivatives bearing the naphthalene moiety linked to the benzothiazole, thiazole, and phenyl scaffolds via amid chain were designed and synthesized as potential and selective BChE inhibitors. The results of the inhibitory activity studies revealed that most of these compounds exhibited significant inhibitor potency on BChE. Compounds 35a (0.025 ± 0.01 μM) and 37a (0.035 ± 0.01 μM) displayed the most potent inhibitory activity, with excellent selectivity against BChE over acetylcholinesterase (SIBChE, 23,686 and 16,936, respectively) among the target compounds. The kinetics studies revealed that these compounds behaved with noncompetitive BChE inhibitors. Molecular docking studies indicated that 35a and 37a fit well into the active side of BChE. In addition, 35a and 37a also had the lowest cytotoxicity for human neuroblastoma cells (SH-SY5Y), potential antioxidant capacity, moderate inhibition potency on amyloid-β1-42 aggregation, and significant neuroprotective effect against SH-SY5Y cell injury induced by H2O2 and amyloid-β1-42. All results suggest that these compounds might be considered as promising new lead compounds in the drug discovery process for the treatment of late-stage Alzheimer's disease.

丁酰胆碱酯酶(BChE)被认为是治疗阿尔茨海默病的一个很有前景的靶点,因为在阿尔茨海默病的晚期,BChE 的水平和活性都会升高。本研究设计并合成了一系列新型 1,2,4-三唑衍生物,这些衍生物含有通过酰胺链连接到苯并噻唑、噻唑和苯基支架上的萘,可作为潜在的选择性 BChE 抑制剂。抑制活性研究结果表明,这些化合物大多对 BChE 具有显著的抑制作用。在目标化合物中,化合物 35a(0.025 ± 0.01 μM)和 37a(0.035 ± 0.01 μM)的抑制活性最强,对 BChE 的选择性优于乙酰胆碱酯酶(SIBChE,分别为 23 686 和 16 936)。动力学研究表明,这些化合物是非竞争性 BChE 抑制剂。分子对接研究表明,35a 和 37a 非常适合 BChE 的活性侧。此外,35a 和 37a 对人神经母细胞瘤细胞(SH-SY5Y)的细胞毒性最低,具有潜在的抗氧化能力,对淀粉样蛋白-β1-42 的聚集具有中等抑制效力,对 H2O2 和淀粉样蛋白-β1-42 诱导的 SH-SY5Y 细胞损伤具有显著的神经保护作用。所有这些结果表明,这些化合物在治疗晚期阿尔茨海默氏症的药物研发过程中,可被视为具有前景的新先导化合物。
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引用次数: 0
A critical review of therapeutic interventions in sickle cell disease: Progress and challenges 镰状细胞病治疗干预的重要回顾:进展与挑战。
IF 4.3 3区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2024-07-19 DOI: 10.1002/ardp.202400381
Chandu Ala, Renuka Parshuram Joshi, Pragya Gupta, Sangam Giri Goswami, Sivaprakash Ramalingam, Chandra Sekhar Kondapalli Venkata Gowri, Murugesan Sankaranarayanan

Sickle cell disease (SCD) is an autosomal recessive genetic disorder that occurs due to the point mutation in the β-globin gene, which results in the formation of sickle hemoglobin (HbS) in the red blood cells (RBCs). When HbS is exposed to an oxygen-depleted environment, it polymerizes, resulting in hemolysis, vaso-occlusion pain, and impaired blood flow. Still, there is no affordable cure for this inherited disease. Approved medications held promise but were met with challenges due to limited patient tolerance and undesired side effects, thereby inhibiting their ability to enhance the quality of life across various individuals with SCD. Progress has been made in understanding the pathophysiology of SCD during the past few decades, leading to the discovery of novel targets and therapies. However, there is a compelling need for research to discover medications with improved efficacy and reduced side effects. Also, more clinical investigations on various drug combinations with different mechanisms of action are needed. This review comprehensively presents therapeutic approaches for SCD, including those currently available or under investigation. It covers fundamental aspects of the disease, such as epidemiology and pathophysiology, and provides detailed discussions on various disease-modifying agents. Additionally, expert insights are offered on the future development of pharmacotherapy for SCD.

镰状细胞病(SCD)是一种常染色体隐性遗传疾病,由于β-球蛋白基因发生点突变,导致红细胞(RBC)中形成镰状血红蛋白(HbS)。当 HbS 暴露在缺氧环境中时,它会发生聚合,导致溶血、血管闭塞性疼痛和血流障碍。目前,这种遗传性疾病还没有经济实惠的治疗方法。已获批准的药物前景看好,但由于患者的耐受性有限和不良副作用,这些药物在提高不同 SCD 患者的生活质量方面遇到了挑战。过去几十年来,人们在了解 SCD 的病理生理学方面取得了进展,从而发现了新的靶点和疗法。然而,目前仍迫切需要研究发现疗效更好、副作用更小的药物。此外,还需要对具有不同作用机制的各种药物组合进行更多的临床研究。本综述全面介绍了 SCD 的治疗方法,包括目前可用或正在研究的方法。它涵盖了该疾病的基本方面,如流行病学和病理生理学,并详细讨论了各种改变病情的药物。此外,专家还对 SCD 药物治疗的未来发展提出了独到见解。
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引用次数: 0
Structural characterization and bioactivity profiling of the fungal peptaibiotic tolypin reveal protective effects against influenza viruses 真菌eptaibiotic tolypin 的结构特征和生物活性分析揭示了其对流感病毒的保护作用。
IF 4.3 3区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2024-07-19 DOI: 10.1002/ardp.202400384
Johanna Eichberg, Markus Oberpaul, Christoph Hartwig, Andrea Helga Geißler, Carsten Culmsee, Andreas Vilcinskas, Eva Böttcher-Friebertshäuser, Hans Brückner, Thomas Degenkolb, Kornelia Hardes

In a bioprospection for new antivirals, we tested nonribosomally biosynthesized polypeptide antibiotics in MDCK II cells for their actions on influenza A and B viruses (IAV/IBV). Only tolypin, a mixture of closely related 16-residue peptaibiotics from the fungus Tolypocladium inflatum IE 1897, showed promising activity. It was selected for further investigation and structural characterization by ultrahigh performance liquid chromatography coupled to high-resolution mass spectrometry (UHPLC-HR-MS/MS) and ultrahigh performance liquid chromatography coupled to in-source collision-induced dissociation tandem mass spectrometry (UHPLC-isCID-HR-MS/MS), revealing 12 partially co-eluting individual peptides that were fully sequenced. Since tolypin-related efrapeptins are potent inhibitors of F1/Fo-ATPase, we screened tolypin for its toxicity against MDCK II cells and larvae of the greater wax moth Galleria mellonella. We found that a nontoxic concentration of tolypin (1 µg/mL) reduced the titer of two IBV strains by 4–5 log values, and that of an H3N2 strain by 1–2 log values, but the H1N1pdm strain was not affected. The higher concentrations of tolypin were cytostatic to MDCK II cells, shifted their metabolism from oxidative phosphorylation to glycolysis, and induced paralysis in G. mellonella, supporting the inhibition of F1/Fo-ATPase as the mode of action. Our results lay the foundations for future work to investigate the interplay between viral replication and cellular energy metabolism, as well as the development of drugs that target host factors.

在新抗病毒药物的生物研究中,我们在 MDCK II 细胞中测试了非核糖体生物合成的多肽抗生素对甲型和乙型流感病毒(IAV/IBV)的作用。只有来自真菌 Tolypocladium inflatum IE 1897 的 tolypin(一种由密切相关的 16 个残基组成的多肽抗生素混合物)显示出了良好的活性。通过超高效液相色谱-高分辨质谱联用技术(UHPLC-HR-MS/MS)和超高效液相色谱-源内碰撞诱导解离串联质谱联用技术(UHPLC-isCID-HR-MS/MS)对其进行了进一步研究和结构表征,发现了 12 个部分共凝结的单个肽段,并对其进行了完整测序。由于 tolypin 相关的 efrapeptins 是 F1/Fo-ATPase 的强效抑制剂,我们筛选了 tolypin 对 MDCK II 细胞和大蜡蛾幼虫的毒性。我们发现,无毒浓度的 tolypin(1 µg/mL)可使两种 IBV 株系的滴度降低 4-5 个对数值,H3N2 株系的滴度降低 1-2 个对数值,但 H1N1pdm 株系不受影响。较高浓度的托里平对 MDCK II 细胞具有细胞抑制作用,使其新陈代谢从氧化磷酸化转变为糖酵解,并诱发 G. mellonella 的麻痹,支持 F1/Fo-ATPase 的抑制作用模式。我们的研究结果为今后研究病毒复制与细胞能量代谢之间的相互作用以及开发针对宿主因素的药物奠定了基础。
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引用次数: 0
New labdane diterpenoids from Alpinia galanga: A new type of GLP-1 secretagogues targeting the PKA-CREB and PI3K-Akt signaling axes 从高良姜中提取的新拉布烷二萜:针对 PKA-CREB 和 PI3K-Akt 信号轴的新型 GLP-1 促泌剂。
IF 4.3 3区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2024-07-19 DOI: 10.1002/ardp.202400383
Pei Liu, Pianchou Gongpan, Sheng-Li Wu, Xin-Yu Li, Xiao-Yan Huang, Yun-Bao Ma, Chang-An Geng

Glucagon-like peptide-1 (GLP-1) secretagogues are fascinating pharmacotherapies to overcome the defects of GLP-1 analogs and dipeptidyl peptidase-4 (DPP-4) inhibitors in treating diabetes and obesity. To discover new GLP-1 secretagogues from natural sources, alpigalangols A-Q (1–17), 17 new labdane diterpenoids including four unusual nor-labdane and N-containing ones, were isolated from the fruits of Alpinia galanga. Most of the isolates showed GLP-1 promotive effects in NCl-H716 cells, of which compounds 3, 4, 12, and 1417 were revealed with high promoting rates of 246.0%–413.8% at 50 µM. A mechanistic study manifested that the most effective compound 12 upregulated the mRNA expression of Gcg and Pcsk1, and the protein phosphorylation of PKA, CREB, and GSK3β, but was inactive on GPBAR and GPR119 receptors. Network pharmacology analysis indicated that the PI3K-Akt pathway was involved in the GLP-1 stimulation of 12, which was highly associated with AKT1, CASP3, PPARG, and ICAM1 proteins. This study suggests that A. galanga is rich in diverse labdane diterpenoids with GLP-1 promoting effects, representing a new type of antidiabetic candidates from natural sources.

胰高血糖素样肽-1(GLP-1)促泌剂是一种令人着迷的药物疗法,可以克服 GLP-1 类似物和二肽基肽酶-4(DPP-4)抑制剂在治疗糖尿病和肥胖症方面的缺陷。为了从天然资源中发现新的 GLP-1 促泌剂,研究人员从高良姜果实中分离出了高良姜酚 A-Q(1-17)--17 种新的唇烷类二萜化合物,包括四种不常见的非唇烷类和含 N 的唇烷类二萜化合物。大多数分离物在 NCl-H716 细胞中显示出 GLP-1 促进作用,其中化合物 3、4、12 和 14-17 在 50 µM 时的促进率高达 246.0%-413.8%。机理研究表明,最有效的化合物 12 能上调 Gcg 和 Pcsk1 的 mRNA 表达,以及 PKA、CREB 和 GSK3β 的蛋白磷酸化,但对 GPBAR 和 GPR119 受体无活性。网络药理学分析表明,PI3K-Akt通路参与了GLP-1对12的刺激,该通路与AKT1、CASP3、PPARG和ICAM1蛋白高度相关。这项研究表明,A. galanga富含多种具有促进GLP-1作用的唇烷二萜类化合物,是一种新型的天然抗糖尿病候选化合物。
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引用次数: 0
Caffeic acid and its derivative caffeic acid phenethyl ester as potential therapeutic compounds for cardiovascular diseases: A systematic review 咖啡酸及其衍生物咖啡酸苯乙酯作为治疗心血管疾病的潜在化合物:系统综述。
IF 4.3 3区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2024-07-15 DOI: 10.1002/ardp.202400240
Arya Nasimi Shad, Iman Akhlaghipour, Atefeh Babazadeh Baghan, Vahid Reza Askari PharmD, PhD, Vafa Baradaran Rahimi PharmD, PhD

Cardiovascular diseases (CVDs) contribute to major public health issues. Some studies have found that caffeic acid (CA) and caffeic acid phenethyl ester (CAPE) may effectively prevent or treat CVDs. However, there is a major need to sum up our current understanding of the possible beneficial or detrimental effects of CA and CAPE on CVDs and related mechanisms. Therefore, this study aimed to summarize the data on this topic. A methodical search was carried out on key databases, including Pubmed, Google Scholar, Scopus, and Web of Science, from the beginning to June 2024. Studies were then assessed for eligibility based on inclusion and exclusion criteria. Treatment with CA and CAPE significantly and positively affected cardiovascular health in various aspects, including atherosclerotic diseases, myocardial infarction, hypertension, cardiac arrhythmias, and hypercoagulation state. Several mechanisms were proposed to mediate these effects, including transcription factors and signaling pathways associated with antioxidant, cytostatic, and anti-inflammatory processes. CA and CAPE were found to have several beneficial effects via multiple mechanisms during the prevention and treatment of various CVDs. However, these promising effects were only reported through in vitro and animal studies, which reinforces the need for further evaluation of these effects via human clinical investigations.

心血管疾病(CVDs)是主要的公共卫生问题。一些研究发现,咖啡酸(CA)和咖啡酸苯乙酯(CAPE)可有效预防或治疗心血管疾病。然而,我们亟需总结目前对 CA 和 CAPE 对心血管疾病可能产生的有益或有害影响及相关机制的认识。因此,本研究旨在总结有关这一主题的数据。从开始到 2024 年 6 月,我们在主要数据库(包括 Pubmed、Google Scholar、Scopus 和 Web of Science)中进行了有条不紊的检索。然后根据纳入和排除标准对研究进行了资格评估。CA和CAPE治疗对心血管健康的各个方面都有明显的积极影响,包括动脉粥样硬化疾病、心肌梗塞、高血压、心律失常和高凝状态。研究提出了介导这些效应的几种机制,包括与抗氧化、细胞抑制和抗炎过程相关的转录因子和信号通路。研究发现,在预防和治疗各种心血管疾病的过程中,CA 和 CAPE 可通过多种机制产生有益的影响。然而,这些令人鼓舞的效果仅通过体外和动物研究进行了报道,这就更有必要通过人体临床研究对这些效果进行进一步评估。
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引用次数: 0
Design, synthesis, and biological evaluation of naphthalene imidazo[1,2-b]pyridazine hybrid derivatives as VEGFR selective inhibitors 作为血管内皮生长因子受体选择性抑制剂的萘咪唑并[1,2-b]哒嗪混合衍生物的设计、合成和生物学评价。
IF 4.3 3区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2024-07-15 DOI: 10.1002/ardp.202400411
Shuang Wang, LinLing Gan, Lei Han, Ping Deng, Yihao Li, Dongxiao He, Haoze Chi, Liwei Zhu, Yuehui Li, Rui Long, Zongjie Gan

The vascular endothelial growth factor receptor (VEGFR) is a receptor tyrosine kinase that is regarded as an emerging target for abnormal angiogenesis diseases. In this study, novel naphthalene imidazo[1,2-b]pyridazine hybrids as VEGFR selective inhibitors were designed and synthesized using a scaffold hopping strategy based on ponatinib, a multitarget kinase inhibitor. Among the evaluated compounds, derivative 9k (WS-011) demonstrated the most potent inhibitory potency against VEGFR-2 (IC50 = 8.4 nM) and displayed superior VEGFR selectivity over a panel of 70 kinases compared with ponatinib. Furthermore, 9k possessed good cytotoxic effects on various cancer cell lines, especially the colon cancer HT-29 cells, with an acceptable oral bioavailability. Moreover, 9k significantly inhibited the migration and invasion of human umbilical vein endothelial cells (HUVEC) cells and induced apoptosis through the upregulation of apoptotic proteins in HT-29 cells. 9k also effectively suppressed the activation of VEGFR-2 signaling pathways, which in turn inhibited the growth of HT-29 cells and the tube formation of HUVECs in vitro. All of the findings revealed that 9k could be considered a promising antiangiogenesis lead that merits further investigation.

血管内皮生长因子受体(VEGFR)是一种受体酪氨酸激酶,被认为是治疗异常血管生成疾病的新兴靶点。本研究以多靶点激酶抑制剂泊纳替尼为基础,采用支架跳转策略设计并合成了新型萘咪唑并[1,2-b]哒嗪杂化物,作为血管内皮生长因子受体选择性抑制剂。在评估的化合物中,衍生物 9k (WS-011) 对血管内皮生长因子受体-2 的抑制效力最强(IC50 = 8.4 nM),与泊纳替尼相比,对 70 种激酶具有更高的血管内皮生长因子受体选择性。此外,9k 对多种癌细胞株,尤其是结肠癌 HT-29 细胞具有良好的细胞毒性作用,且口服生物利用度可接受。此外,9k 还能明显抑制人脐静脉内皮细胞(HUVEC)的迁移和侵袭,并通过上调 HT-29 细胞中的凋亡蛋白诱导细胞凋亡。9k 还能有效抑制 VEGFR-2 信号通路的激活,进而抑制 HT-29 细胞的生长和 HUVEC 细胞的管形成。所有这些发现都表明,9k 是一种很有前景的抗血管生成药物,值得进一步研究。
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引用次数: 0
Soft drug inhibitors for the epigenetic targets lysine-specific demethylase 1 and histone deacetylases 表观遗传靶标赖氨酸特异性去甲基化酶 1 和组蛋白去乙酰化酶的软性药物抑制剂。
IF 4.3 3区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2024-07-14 DOI: 10.1002/ardp.202400450
Johannes Seitz, Marina Auth, Tony Prinz, Mirjam Hau, Pavlos Tzortzoglou, Johannes Schulz-Fincke, Karin Schmidtkunz, Adina A. Baniahmad, Dominica Willmann, Eric Metzger, Lutz Hein, Sebastian Preissl, Roland Schüle, Manfred Jung

Epigenetic modulators such as lysine-specific demethylase 1 (LSD1) and histone deacetylases (HDACs) are drug targets for cancer, neuropsychiatric disease, or inflammation, but inhibitors of these enzymes exhibit considerable side effects. For a potential local treatment with reduced systemic toxicity, we present here soft drug candidates as new LSD1 and HDAC inhibitors. A soft drug is a compound that is degraded in vivo to less active metabolites after having achieved its therapeutic function. This has been successfully applied for corticosteroids in the clinic, but soft drugs targeting epigenetic enzymes are scarce, with the HDAC inhibitor remetinostat being the only example. We have developed new methyl ester-containing inhibitors targeting LSD1 or HDACs and compared the biological activities of these to their respective carboxylic acid cleavage products. In vitro activity assays, cellular experiments, and a stability assay identified potent HDAC and LSD1 soft drug candidates that are superior to their corresponding carboxylic acids in cellular models.

赖氨酸特异性去甲基化酶 1(LSD1)和组蛋白去乙酰化酶(HDAC)等表观遗传调节剂是癌症、神经精神疾病或炎症的药物靶点,但这些酶的抑制剂会产生相当大的副作用。为了减少全身毒性,实现潜在的局部治疗,我们在此介绍作为新型 LSD1 和 HDAC 抑制剂的候选软性药物。软性药物是一种在体内实现治疗功能后会降解为活性较低的代谢物的化合物。皮质类固醇已成功应用于临床,但针对表观遗传酶的软性药物却很少,唯一的例子是 HDAC 抑制剂 remetinostat。我们开发了针对 LSD1 或 HDAC 的新型含甲酯抑制剂,并将其生物活性与各自的羧酸裂解产物进行了比较。体外活性测定、细胞实验和稳定性测定确定了在细胞模型中优于相应羧酸的强效 HDAC 和 LSD1 软性候选药物。
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引用次数: 0
Utilization of an optimized AlphaFold protein model for structure-based design of a selective HDAC11 inhibitor with anti-neuroblastoma activity 利用优化的 AlphaFold 蛋白模型,基于结构设计具有抗神经母细胞瘤活性的选择性 HDAC11 抑制剂。
IF 4.3 3区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2024-07-12 DOI: 10.1002/ardp.202400486
Fady Baselious, Sebastian Hilscher, Sven Hagemann, Sunita Tripathee, Dina Robaa, Cyril Barinka, Stefan Hüttelmaier, Mike Schutkowski, Wolfgang Sippl

AlphaFold is an artificial intelligence approach for predicting the three-dimensional (3D) structures of proteins with atomic accuracy. One challenge that limits the use of AlphaFold models for drug discovery is the correct prediction of folding in the absence of ligands and cofactors, which compromises their direct use. We have previously described the optimization and use of the histone deacetylase 11 (HDAC11) AlphaFold model for the docking of selective inhibitors such as FT895 and SIS17. Based on the predicted binding mode of FT895 in the optimized HDAC11 AlphaFold model, a new scaffold for HDAC11 inhibitors was designed, and the resulting compounds were tested in vitro against various HDAC isoforms. Compound 5a proved to be the most active compound with an IC50 of 365 nM and was able to selectively inhibit HDAC11. Furthermore, docking of 5a showed a binding mode comparable to FT895 but could not adopt any reasonable poses in other HDAC isoforms. We further supported the docking results with molecular dynamics simulations that confirmed the predicted binding mode. 5a also showed promising activity with an EC50 of 3.6 µM on neuroblastoma cells.

AlphaFold 是一种以原子精度预测蛋白质三维(3D)结构的人工智能方法。限制 AlphaFold 模型用于药物发现的一个挑战是在没有配体和辅助因子的情况下正确预测折叠,这影响了其直接使用。我们之前介绍了组蛋白去乙酰化酶 11(HDAC11)AlphaFold 模型的优化和使用,用于 FT895 和 SIS17 等选择性抑制剂的对接。根据优化后的 HDAC11 AlphaFold 模型中预测的 FT895 结合模式,设计了 HDAC11 抑制剂的新支架,并针对各种 HDAC 同工酶对所得化合物进行了体外测试。化合物 5a 被证明是最有活性的化合物,其 IC50 值为 365 nM,能够选择性地抑制 HDAC11。此外,5a 的对接显示了与 FT895 相似的结合模式,但在其他 HDAC 同工酶中无法采用任何合理的姿势。我们通过分子动力学模拟进一步证实了对接结果,并证实了预测的结合模式。5a 对神经母细胞瘤细胞的 EC50 值为 3.6 µM,显示出良好的活性。
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引用次数: 0
Quinazoline-oxindole hybrids as angiokinase inhibitors and anticancer agents: Design, synthesis, biological evaluation, and molecular docking studies 作为血管激酶抑制剂和抗癌剂的喹唑啉-吲哚混合物:设计、合成、生物学评价和分子对接研究。
IF 4.3 3区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2024-07-12 DOI: 10.1002/ardp.202300682
Yasmin M. Syam, Somaia S. Abd El-Karim, Heba T. Abdel-Mohsen

Two new sets of quinazoline-oxindole 8a–l and quinazoline-dioxoisoindoline 10a–d hybrids were designed as type II angiokinase inhibitors and anticancer agents. The design strategy was adjusted to account for the quinazoline scaffold's placement in the target kinases' hinge region, where it would form hydrogen bonding and hydrophobic interactions with the important amino acids to stabilize it, and the amide group's occupation in the gate region, which would direct the oxindole scaffold toward the hydrophobic back pocket. The two sets of quinazolines 8a–l and 10a–d displayed pronounced inhibitory activity on VEGFR-2 (IC50 = 0.46–2.20 µM). The quinazoline-oxindole hybrids 8d, 8f, and 8h displayed IC50 = 0.46, 0.49, and 0.49 µM, respectively. Compound 8f demonstrated potent multikinase activity with IC50 values of 0.95 and 0.67 µM against FGFR-1 and BRAF, respectively. Additionally, compound 8f showed significant anticancer activity against National Cancer Institute's cancer cell lines, with GI50 reaching 1.21 µM. Analysis of the impact of compound 8f on the MDA-MB-231 cell line's cell cycle and apoptosis revealed that 8f stalled the cell cycle at the G2/M phase and promoted its necrosis.

我们设计了两组新的喹唑啉-氧化吲哚 8a-l 和喹唑啉-二氧异吲哚啉 10a-d 杂交化合物,作为 II 型血管激酶抑制剂和抗癌剂。对设计策略进行了调整,以考虑到喹唑啉支架位于目标激酶的铰链区,可与重要氨基酸形成氢键和疏水相互作用,使其稳定;酰胺基团位于门区,可将吲哚支架引向疏水后袋。两组喹唑啉 8a-l 和 10a-d 对 VEGFR-2 具有明显的抑制活性(IC50 = 0.46-2.20 µM)。喹唑啉-吲哚混合物 8d、8f 和 8h 的 IC50 分别为 0.46、0.49 和 0.49 µM。化合物 8f 对 FGFR-1 和 BRAF 的 IC50 值分别为 0.95 和 0.67 µM,显示出强大的多激酶活性。此外,化合物 8f 对美国国家癌症研究所的癌细胞系也显示出显著的抗癌活性,其 GI50 值达到 1.21 µM。化合物 8f 对 MDA-MB-231 细胞系的细胞周期和细胞凋亡的影响分析表明,8f 能使细胞周期停滞在 G2/M 阶段,并促进细胞坏死。
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