Maximilian Scott, Julia A Gamble, Caleb Marshall Brown, Kirstin S Brink
For over a century, palaeopathology has been used as a tool for understanding evolution, disease in past communities and populations, and to interpret behaviour of extinct taxa. Physical traumas in particular have frequently been the justification for interpretations about aggressive and even competitive behaviours in extinct taxa. However, the standards used in these interpretations have been inconsistent and occasionally questionable, and knowledge of extant reptile pathology is limited. Interpretations about the timelines and causes of unhealed bone damage are unreliable, and so behavioural implications from these marks are dubious. Even in the case of tooth marks, perimortem damage can be difficult to distinguish from postmortem alteration. In this review, methods from the anthropological sciences are adapted for the purposes of palaeontology, especially in establishing a new framework to distinguish antemortem traumatic damage from other similarly presenting features like sediment encrustation, postmortem damage/taphonomic features, variants of anatomical features, and non-traumatic palaeopathologies. Even in cases where traumatic palaeopathologies are accurately macroscopically identified, noting isolated incidences may not provide sufficient evidence to interpret behaviour at any taxonomic level. Future research directions in modern reptile pathology are proposed to improve the efficacy of traumatic palaeopathologies as a tool in interpreting extinct reptile behaviours.
{"title":"Injuries in deep time: interpreting competitive behaviours in extinct reptiles via palaeopathology.","authors":"Maximilian Scott, Julia A Gamble, Caleb Marshall Brown, Kirstin S Brink","doi":"10.1002/brv.70116","DOIUrl":"https://doi.org/10.1002/brv.70116","url":null,"abstract":"<p><p>For over a century, palaeopathology has been used as a tool for understanding evolution, disease in past communities and populations, and to interpret behaviour of extinct taxa. Physical traumas in particular have frequently been the justification for interpretations about aggressive and even competitive behaviours in extinct taxa. However, the standards used in these interpretations have been inconsistent and occasionally questionable, and knowledge of extant reptile pathology is limited. Interpretations about the timelines and causes of unhealed bone damage are unreliable, and so behavioural implications from these marks are dubious. Even in the case of tooth marks, perimortem damage can be difficult to distinguish from postmortem alteration. In this review, methods from the anthropological sciences are adapted for the purposes of palaeontology, especially in establishing a new framework to distinguish antemortem traumatic damage from other similarly presenting features like sediment encrustation, postmortem damage/taphonomic features, variants of anatomical features, and non-traumatic palaeopathologies. Even in cases where traumatic palaeopathologies are accurately macroscopically identified, noting isolated incidences may not provide sufficient evidence to interpret behaviour at any taxonomic level. Future research directions in modern reptile pathology are proposed to improve the efficacy of traumatic palaeopathologies as a tool in interpreting extinct reptile behaviours.</p>","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":" ","pages":""},"PeriodicalIF":11.7,"publicationDate":"2025-12-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145802661","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jon Dickson, Ellen Wohl, Laura L Govers, Oscar Franken, Tjeerd J Bouma, Han Olff, Britas Klemens Eriksson, Maryann S Watson, Luísa M S Borges, Tjisse van der Heide
<p><p>The ecology of forests, their losses, and terrestrial wood decomposition dynamics have been intensively studied and reviewed. In the aquatic realm, reviews have concentrated on large wood (LW) in rivers and the transition from freshwater to marine environments in the Pacific Northwest of North America. However, a comprehensive global synthesis of LW dynamics, including decomposition processes and human influences across the freshwater-marine continuum, is lacking. Here, we review the role of LW and its fate across the entire freshwater-to-marine gradient and synthesise our findings in an integrative conceptual overview. LW has been exported by rivers to sea for hundreds of millions of years. During this journey, LW acts as an ecosystem engineer by modifying its environment and the landscape. In rivers, LW alters hydrodynamics, resulting in sediment retention and changes to riverbed and shoreline morphology. Along coastlines, driftwood initiates dunes, prevents erosion, retains moisture, and provides lignocellulose-based nutrients. Important habitats provided by floating rafts and sunken 'islands' of wood are found across estuarine, shelf and open/deep seas. Wood degradation gradually transitions from mechanical to biomechanical and chemotrophic. In rivers, degradation is primarily mechanical due to abrasion and impacts. In estuaries, salinity increases, allowing marine wood borers to begin biomechanical degradation; their activity remains the main degradation cause across marine environments. On the seafloor, chemotrophic micro-organisms finalise decomposition of small fragments. LW accumulations act as biodiversity hotspots across the freshwater-to-marine gradient. River communities rely on induced abiotic changes such as meanders, pools, and riffles, while log jams and dams serve as velocity and predation shelters, and create pools with cooler, deeper water. The wood itself acts as attachment substrate for eggs and larvae. From estuaries seaward, the focus fully shifts to LW itself: driftwood provides lignocellulose for wood-boring organisms and stable substrate for sessile animals and macroalgae. In shelf seas and open oceans, floating LW rafts provide shade, shelter, and attachment substrate. Humans have greatly decreased export of LW from river to sea by clearing forests for agriculture and urbanisation, damming rivers, and removing LW 'debris' that is often deemed a hazard or nuisance in developed areas. Indeed, the annual export of LW >3 m long to marine environments has decreased by 5,000,000 m<sup>3</sup> compared to the pre-landscape-domestication period. Any wood that reaches the sea washes up on shore or sinks, where it is often removed by bottom trawling. Restoring historic levels of LW is implausible, but reintroductions can restore ecosystem functions along the freshwater-to-marine gradient. Thus far, restoration research has focused on freshwater systems, while such work is in its infancy in coastal and marine environments.
{"title":"A review of the historic and present ecological role of aquatic and shoreline wood, from forest to deep sea.","authors":"Jon Dickson, Ellen Wohl, Laura L Govers, Oscar Franken, Tjeerd J Bouma, Han Olff, Britas Klemens Eriksson, Maryann S Watson, Luísa M S Borges, Tjisse van der Heide","doi":"10.1002/brv.70117","DOIUrl":"https://doi.org/10.1002/brv.70117","url":null,"abstract":"<p><p>The ecology of forests, their losses, and terrestrial wood decomposition dynamics have been intensively studied and reviewed. In the aquatic realm, reviews have concentrated on large wood (LW) in rivers and the transition from freshwater to marine environments in the Pacific Northwest of North America. However, a comprehensive global synthesis of LW dynamics, including decomposition processes and human influences across the freshwater-marine continuum, is lacking. Here, we review the role of LW and its fate across the entire freshwater-to-marine gradient and synthesise our findings in an integrative conceptual overview. LW has been exported by rivers to sea for hundreds of millions of years. During this journey, LW acts as an ecosystem engineer by modifying its environment and the landscape. In rivers, LW alters hydrodynamics, resulting in sediment retention and changes to riverbed and shoreline morphology. Along coastlines, driftwood initiates dunes, prevents erosion, retains moisture, and provides lignocellulose-based nutrients. Important habitats provided by floating rafts and sunken 'islands' of wood are found across estuarine, shelf and open/deep seas. Wood degradation gradually transitions from mechanical to biomechanical and chemotrophic. In rivers, degradation is primarily mechanical due to abrasion and impacts. In estuaries, salinity increases, allowing marine wood borers to begin biomechanical degradation; their activity remains the main degradation cause across marine environments. On the seafloor, chemotrophic micro-organisms finalise decomposition of small fragments. LW accumulations act as biodiversity hotspots across the freshwater-to-marine gradient. River communities rely on induced abiotic changes such as meanders, pools, and riffles, while log jams and dams serve as velocity and predation shelters, and create pools with cooler, deeper water. The wood itself acts as attachment substrate for eggs and larvae. From estuaries seaward, the focus fully shifts to LW itself: driftwood provides lignocellulose for wood-boring organisms and stable substrate for sessile animals and macroalgae. In shelf seas and open oceans, floating LW rafts provide shade, shelter, and attachment substrate. Humans have greatly decreased export of LW from river to sea by clearing forests for agriculture and urbanisation, damming rivers, and removing LW 'debris' that is often deemed a hazard or nuisance in developed areas. Indeed, the annual export of LW >3 m long to marine environments has decreased by 5,000,000 m<sup>3</sup> compared to the pre-landscape-domestication period. Any wood that reaches the sea washes up on shore or sinks, where it is often removed by bottom trawling. Restoring historic levels of LW is implausible, but reintroductions can restore ecosystem functions along the freshwater-to-marine gradient. Thus far, restoration research has focused on freshwater systems, while such work is in its infancy in coastal and marine environments. ","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":" ","pages":""},"PeriodicalIF":11.7,"publicationDate":"2025-12-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145802699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cyril Hammoud, Juan Antonio Balbuena, Isabel Blasco-Costa, Katie O'Dwyer, Rachel A Paterson, Tomáš Scholz, Christian Selbach, Bernd Sures, David W Thieltges
Parasites exist in every ecosystem, affecting nearly all organisms and playing a complex role in human societies. On the one hand, they contribute substantially to biodiversity and support ecosystem stability by performing essential ecological functions. On the other, they can impose health burdens on their hosts, causing diseases in both animals and humans. Despite their significance, our understanding of how parasitic organisms are affected by human-driven environmental change remains poor. In other well-studied groups such as free-living birds, mammals and insects, long-term ecological data sets have been instrumental in elucidating temporal trends in abundance or diversity and linking them to anthropogenic drivers. For parasites however, overarching long-term trends in infection levels or diversity have yet to be identified. Here we provide an overview of the research approaches developed to study long-term changes in parasite systems and the trends highlighted by these studies. Our aims were to help researchers make informed methodological decisions when designing their research, and to provide recommendations for future long-term research on parasite ecology. To this end, we performed a systematic literature search on long-term analyses of eukaryotic parasites of wild animals and identified four types of approaches deployed to gather long-term data: (i) long-term monitoring; (ii) snapshot resampling; (iii) literature-based research; and (iv) natural history collection-based studies. Our results revealed striking differences in the temporal scope, geographical scale of sampling, sample sizes and taxonomic resolution of parasite identification among these approaches. However, no overarching trends in parasite infection levels or diversity were identified. When detected, significant temporal changes were often linked to anthropogenic disturbances, but these claims were rarely supported by inferential analyses. Overall, our results show that our understanding of long-term trends in parasite systems remains hampered by data scarcity and research biases. To address these issues, we advocate for the establishment of large-scale parasite monitoring programmes combined with existing ecological monitoring projects, as well as the development of new scalable biomonitoring tools. We also highlight the importance of valorising historical data and preserved biological material in museum collections to obtain baseline information on parasite systems.
{"title":"Long-term trends in parasite diversity and infection levels: approaches and patterns.","authors":"Cyril Hammoud, Juan Antonio Balbuena, Isabel Blasco-Costa, Katie O'Dwyer, Rachel A Paterson, Tomáš Scholz, Christian Selbach, Bernd Sures, David W Thieltges","doi":"10.1002/brv.70119","DOIUrl":"https://doi.org/10.1002/brv.70119","url":null,"abstract":"<p><p>Parasites exist in every ecosystem, affecting nearly all organisms and playing a complex role in human societies. On the one hand, they contribute substantially to biodiversity and support ecosystem stability by performing essential ecological functions. On the other, they can impose health burdens on their hosts, causing diseases in both animals and humans. Despite their significance, our understanding of how parasitic organisms are affected by human-driven environmental change remains poor. In other well-studied groups such as free-living birds, mammals and insects, long-term ecological data sets have been instrumental in elucidating temporal trends in abundance or diversity and linking them to anthropogenic drivers. For parasites however, overarching long-term trends in infection levels or diversity have yet to be identified. Here we provide an overview of the research approaches developed to study long-term changes in parasite systems and the trends highlighted by these studies. Our aims were to help researchers make informed methodological decisions when designing their research, and to provide recommendations for future long-term research on parasite ecology. To this end, we performed a systematic literature search on long-term analyses of eukaryotic parasites of wild animals and identified four types of approaches deployed to gather long-term data: (i) long-term monitoring; (ii) snapshot resampling; (iii) literature-based research; and (iv) natural history collection-based studies. Our results revealed striking differences in the temporal scope, geographical scale of sampling, sample sizes and taxonomic resolution of parasite identification among these approaches. However, no overarching trends in parasite infection levels or diversity were identified. When detected, significant temporal changes were often linked to anthropogenic disturbances, but these claims were rarely supported by inferential analyses. Overall, our results show that our understanding of long-term trends in parasite systems remains hampered by data scarcity and research biases. To address these issues, we advocate for the establishment of large-scale parasite monitoring programmes combined with existing ecological monitoring projects, as well as the development of new scalable biomonitoring tools. We also highlight the importance of valorising historical data and preserved biological material in museum collections to obtain baseline information on parasite systems.</p>","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":" ","pages":""},"PeriodicalIF":11.7,"publicationDate":"2025-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145792639","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}