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Cryptic species conservation: a review. 隐蔽物种保护:综述。
IF 11 1区 生物学 Q1 BIOLOGY Pub Date : 2024-09-05 DOI: 10.1111/brv.13139
Daniel Hending

Cryptic species are groups of two or more taxa that were previously classified as single nominal species. Being almost morphologically indistinguishable, cryptic species have historically been hard to detect. Only through modern morphometric, genetic, and molecular analyses has the hidden biodiversity of cryptic species complexes been revealed. Cryptic diversity is now widely acknowledged, but unlike more recognisable, charismatic species, scientists face additional challenges when studying cryptic taxa and protecting their wild populations. Demographical and ecological data are vital to facilitate and inform successful conservation actions, particularly at the individual species level, yet this information is lacking for many cryptic species due to their recent taxonomic description and lack of research attention. The first part of this article summarises cryptic speciation and diversity, and explores the numerous barriers and considerations that conservation biologists must navigate to detect, study and manage cryptic species populations effectively. The second part of the article seeks to address how we can overcome the challenges associated with efficiently and non-invasively detecting cryptic species in-situ, and filling vital knowledge gaps that are currently inhibiting applied conservation. The final section discusses future directions, and suggests that large-scale, holistic, and collaborative approaches that build upon successful existing applications will be vital for cryptic species conservation. This article also acknowledges that sufficient data to implement effective species-specific conservation will be difficult to attain for many cryptic animals, and protected area networks will be vital for their conservation in the short term.

隐蔽物种是由两个或更多分类群组成的群体,这些分类群以前被归类为单一的标称物种。由于在形态上几乎无法区分,隐蔽物种历来很难被发现。只有通过现代形态计量学、遗传学和分子分析,隐性物种群隐藏的生物多样性才得以揭示。隐性多样性现在已得到广泛承认,但与更易识别、更有魅力的物种不同,科学家在研究隐性类群和保护其野生种群时面临更多挑战。人口学和生态学数据对于促进和指导成功的保护行动至关重要,尤其是在物种个体层面,但由于许多隐生物种的分类学描述较新,且缺乏研究关注,因此这些信息非常缺乏。本文第一部分概述了隐生物种的分化和多样性,并探讨了保护生物学家在有效探测、研究和管理隐生物种种群时必须克服的众多障碍和考虑因素。文章的第二部分试图探讨我们如何才能克服与高效、无创地就地探测隐生物种相关的挑战,并填补目前阻碍应用保护的重要知识空白。最后一部分讨论了未来的发展方向,并提出以现有成功应用为基础的大规模、整体性和协作性方法对隐栖物种保护至关重要。本文还承认,对于许多隐栖动物来说,很难获得足够的数据来实施有效的特定物种保护,保护区网络在短期内对其保护至关重要。
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引用次数: 0
The effects of human-caused mortality on mammalian cooperative breeders: a synthesis. 人类造成的死亡对哺乳动物合作繁殖者的影响:综述。
IF 11 1区 生物学 Q1 BIOLOGY Pub Date : 2024-09-02 DOI: 10.1111/brv.13133
David E Ausband, Peter F Rebholz, Lindsay Petrillo

Human-caused mortality can be pervasive and even highly selective for individuals in groups of cooperative breeders. Many studies of cooperative breeders, however, do not address human-caused mortality. Similarly, studies focused on the effects of human-caused mortality on wildlife populations often do not consider the ecology of cooperative breeders. We searched the literature and identified 58 studies where human-caused mortality affected a group characteristic, vital rate, or population state of a cooperative breeder. Of studies reporting population growth or decline, 80% reported a link between human-caused mortality and population declines in cooperative breeders. Such studies often did not identify the mechanism behind population declines, but 28% identified concurrent declines in adult survival and another 21% reported concurrent declines in recruitment or reproduction. There was little overlap between the cooperative breeding and human-caused mortality literatures, limiting our ability to accrue knowledge. Future work would be beneficial if it (i) identified the vital rate(s) causing population declines, (ii) leveraged management actions such as lethal removal to ask questions about the ecology of group-living in cooperative breeders, and (iii) used insights from cooperative breeding theory to inform management actions and conservation of group-living species.

人类造成的死亡可能很普遍,甚至对合作繁殖者群体中的个体具有高度选择性。然而,许多关于合作繁殖者的研究并不涉及人为死亡。同样,关注人为死亡对野生动物种群影响的研究往往也没有考虑合作繁殖者的生态学。我们检索了文献,发现有 58 项研究涉及人为死亡对合作繁殖者的群体特征、生命率或种群状态的影响。在报告种群增长或下降的研究中,80%的研究报告了人为死亡与合作繁殖者种群下降之间的联系。这些研究通常没有指出种群数量下降背后的机理,但有 28% 的研究指出成鸟存活率同时下降,另有 21% 的研究指出招募或繁殖率同时下降。合作繁殖与人为死亡之间几乎没有重叠,这限制了我们积累知识的能力。未来的工作如果能:(i)确定导致种群数量下降的生命率;(ii)利用诸如致死清除等管理措施来提出有关合作繁殖者群居生态学的问题;以及(iii)利用合作繁殖理论的见解来指导管理措施和群居物种的保护工作,将大有裨益。
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引用次数: 0
Bending the curve of global freshwater biodiversity loss: what are the prospects? 弯曲全球淡水生物多样性丧失的曲线:前景如何?
IF 11 1区 生物学 Q1 BIOLOGY Pub Date : 2024-09-02 DOI: 10.1111/brv.13137
David Dudgeon, David L Strayer
<p><p>Freshwater biodiversity conservation has received substantial attention in the scientific literature and is finally being recognized in policy frameworks such as the Global Biodiversity Framework and its associated targets for 2030. This is important progress. Nonetheless, freshwater species continue to be confronted with high levels of imperilment and widespread ecosystem degradation. An Emergency Recovery Plan (ERP) proposed in 2020 comprises six measures intended to "bend the curve" of freshwater biodiversity loss, if they are widely adopted and adequately supported. We review evidence suggesting that the combined intensity of persistent and emerging threats to freshwater biodiversity has become so serious that current and projected efforts to preserve, protect and restore inland-water ecosystems may be insufficient to avert substantial biodiversity losses in the coming decades. In particular, climate change, with its complex and harmful impacts, will frustrate attempts to prevent biodiversity losses from freshwater ecosystems already affected by multiple threats. Interactions among these threats will limit recovery of populations and exacerbate declines resulting in local or even global extinctions, especially among low-viability populations in degraded or fragmented ecosystems. In addition to impediments represented by climate change, we identify several other areas where the absolute scarcity of fresh water, inadequate scientific information or predictive capacity, and a widespread failure to mitigate anthropogenic stressors, are liable to set limits on the recovery of freshwater biodiversity. Implementation of the ERP rapidly and at scale through many widely dispersed local actions focused on regions of high freshwater biodiversity and intense threat, together with an intensification of ex-situ conservation efforts, will be necessary to preserve native freshwater biodiversity during an increasingly uncertain climatic future in which poorly understood, emergent and interacting threats have become more influential. But implementation of the ERP must be accompanied by measures that will improve water, energy and food security for humans - without further compromising the condition of freshwater ecosystems. Unfortunately, the inadequate political implementation of policies to arrest widely recognized environmental challenges such as climate change do not inspire confidence about the possible success of the ERP. In many parts of the world, the Anthropocene future seems certain to include extended periods with an absolute scarcity of uncontaminated surface runoff that will inevitably be appropriated by humans. Unless there is a step-change in societal awareness of - and commitment to - the conservation of freshwater biodiversity, together with necessary actions to arrest climate change, implementation of established methods for protecting freshwater biodiversity may not bend the curve enough to prevent continued ecosystem degradation and s
淡水生物多样性保护在科学文献中受到极大关注,并最终在政策框架中得到认可,如全球生物多样性框架及其 2030 年的相关目标。这是一个重要的进步。然而,淡水物种仍然面临着高度危险和广泛的生态系统退化。2020 年提出的 "紧急恢复计划"(ERP)包括六项措施,如果这些措施被广泛采用并得到充分支持,淡水生物多样性丧失的 "曲线 "将得以 "弯曲"。我们回顾的证据表明,淡水生物多样性所面临的持续性威胁和新出现威胁的综合强度已变得如此严重,以至于当前和预计的保存、保护和恢复内陆水域生态系统的努力可能不足以在未来几十年内避免生物多样性的大量丧失。特别是气候变化,其复杂而有害的影响将使防止淡水生态系统生物多样性丧失的努力受挫,而淡水生态系统已经受到多重威胁的影响。这些威胁之间的相互作用将限制种群的恢复,并加剧衰退,导致局部甚至全球物种灭绝,尤其是在退化或支离破碎的生态系统中的低生存能力种群。除了气候变化所带来的障碍之外,我们还发现在其他一些领域,淡水的绝对稀缺性、科学信息或预测能力的不足,以及人为压力因素的普遍失效,都有可能对淡水生物多样性的恢复造成限制。在未来气候越来越不确定的情况下,人们对各种新出现的和相互影响的威胁了解不 够,要保护本地淡水生物多样性,就必须通过在淡水生物多样性丰富和威胁严重的地区采 取许多广泛分散的地方行动,迅速和大规模地实施 ERP,同时加强就地保护工作。但是,在实施 ERP 的同时,还必须采取措施,在不进一步损害淡水生态系统状况的情况下,改善人类的水、能源和食品安全。遗憾的是,为应对气候变化等公认的环境挑战而制定的政策在政治上执行不力,这让人们对 ERP 可能取得成功缺乏信心。在世界许多地方,"人类世 "的未来似乎肯定会包括长时间绝对缺乏未受污染的地表径流,而这些径流将不可避免地被人类占用。除非社会对保护淡水生物多样性的认识和承诺发生重大变化,同时采取必要的行动来遏制气候变化,否则,实施既定的保护淡水生物多样性的方法可能无法防止生态系统继续退化和物种继续减少。
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引用次数: 0
The origin of great ape gestural forms. 巨猿手势的起源
IF 11 1区 生物学 Q1 BIOLOGY Pub Date : 2024-08-27 DOI: 10.1111/brv.13136
Kirsty E Graham, Federico Rossano, Richard T Moore

Two views claim to account for the origins of great ape gestural forms. On the Leipzig view, gestural forms are ontogenetically ritualised from action sequences between pairs of individuals. On the St Andrews view, gestures are the product of natural selection for shared gestural forms. The Leipzig view predicts within- and between-group differences between gestural forms that arise as a product of learning in ontogeny. The St Andrews view predicts universal gestural forms comprehensible within and between species that arise because gestural forms were a target of natural selection. We reject both accounts and propose an alternative "recruitment view" of the origins of great ape gestures. According to the recruitment view, great ape gestures recruit features of their existing behavioural repertoire for communicative purposes. Their gestures inherit their communicative functions from visual (and sometimes tactile) presentations of familiar and easily recognisable action schemas and states and parts of the body. To the extent that great ape species possess similar bodies, this predicts mutual comprehensibility within and between species - but without supposing that gestural forms were themselves targets of natural selection. Additionally, we locate great ape gestural communication within a pragmatic framework that is continuous with human communication, and make testable predications for adjudicating between the three alternative views. We propose that the recruitment view best explains existing data, and does so within a mechanistic framework that emphasises continuity between human and non-human great ape communication.

有两种观点可以解释巨猿手势的起源。莱比锡观点认为,手势是一对个体之间的动作序列在本体上形成的仪式。根据圣安德鲁斯的观点,手势是自然选择共享手势形式的产物。莱比锡观点认为,手势形式在群体内部和群体之间存在差异,这种差异是本体学习的产物。圣安德鲁斯的观点则认为,由于手势形式是自然选择的目标,因此在物种内部和物种之间出现了可以理解的普遍手势形式。我们反对这两种观点,并提出了巨猿手势起源的另一种 "招募观点"。根据这种观点,类人猿的手势是出于交流的目的,从它们现有的行为剧目中吸收了一些特征。它们的手势从视觉上(有时是触觉上)呈现熟悉和易于识别的动作模式、状态和身体部位,从而继承了它们的交流功能。只要类人猿物种拥有相似的身体,这就预示着它们在物种内部和物种之间是可以相互理解的--但这并不意味着手势形式本身就是自然选择的目标。此外,我们将类人猿的手势交流定位在一个与人类交流具有连续性的实用主义框架内,并提出了可检验的预言,以便在三种可选观点之间做出判断。我们提出,招募观点最能解释现有数据,而且是在强调人类与非人类巨猿交流连续性的机制框架内解释的。
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引用次数: 0
Epigenetic responses of trees to environmental stress in the context of climate change. 气候变化背景下树木对环境压力的表观遗传反应。
IF 11 1区 生物学 Q1 BIOLOGY Pub Date : 2024-08-27 DOI: 10.1111/brv.13132
Matin Miryeganeh, David W Armitage

In long-lived tree populations, when environmental change outpaces rates of evolutionary adaptation, plasticity in traits related to stress tolerance, dormancy, and dispersal may be vital for preventing extinction. While a population's genetic background partly determines its ability to adapt to a changing environment, so too do the many types of epigenetic modifications that occur within and among populations, which vary on timescales orders of magnitude faster than the emergence of new beneficial alleles. Consequently, phenotypic plasticity driven by epigenetic modification may be especially critical for sessile, long-lived organisms such as trees that must rely on this plasticity to keep pace with rapid anthropogenic environmental change. While studies have reported large effects of DNA methylation, histone modification, and non-coding RNAs on the expression of stress-tolerance genes and resulting phenotypic responses, little is known about the role of these effects in non-model plants and particularly in trees. Here, we review new findings in plant epigenetics with particular relevance to the ability of trees to adapt to or escape stressors associated with rapid climate change. Such findings include specific epigenetic influences over drought, heat, and salinity tolerance, as well as dormancy and dispersal traits. We also highlight promising findings concerning transgenerational inheritance of an epigenetic 'stress memory' in plants. As epigenetic information is becoming increasingly easy to obtain, we close by outlining ways in which ecologists can use epigenetic information better to inform population management and forecasting efforts. Understanding the molecular mechanisms behind phenotypic plasticity and stress memory in tree species offers a promising path towards a mechanistic understanding of trees' responses to climate change.

在寿命较长的树木种群中,当环境变化速度超过进化适应速度时,与抗逆性、休眠和扩散相关的性状的可塑性可能对防止灭绝至关重要。虽然种群的遗传背景在一定程度上决定了其适应不断变化的环境的能力,但在种群内部和种群之间发生的多种表观遗传修饰也同样决定了其适应能力。因此,表观遗传修饰驱动的表型可塑性对于树木等无梗、长寿生物来说可能尤为重要,因为它们必须依靠这种可塑性才能跟上人为环境快速变化的步伐。虽然有研究报告称 DNA 甲基化、组蛋白修饰和非编码 RNA 对耐压基因的表达和由此产生的表型反应有很大影响,但人们对这些影响在非模式植物尤其是树木中的作用知之甚少。在此,我们回顾了植物表观遗传学的新发现,这些发现与树木适应或摆脱与快速气候变化相关的胁迫的能力特别相关。这些发现包括表观遗传学对干旱、高温和盐度耐受性以及休眠和扩散特性的特定影响。我们还重点介绍了有关植物表观遗传 "胁迫记忆 "代代相传的令人鼓舞的发现。由于表观遗传信息越来越容易获得,我们最后概述了生态学家如何更好地利用表观遗传信息为种群管理和预测工作提供信息。了解树种表型可塑性和应激记忆背后的分子机制为从机制上理解树木对气候变化的反应提供了一条充满希望的道路。
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引用次数: 0
Egg coverings in insects: ecological adaptation to abiotic and biotic selective pressures. 昆虫的卵覆盖物:对非生物和生物选择性压力的生态适应。
IF 11 1区 生物学 Q1 BIOLOGY Pub Date : 2024-08-22 DOI: 10.1111/brv.13130
Tian-Hao Li, Xingeng Wang, Nicolas Desneux, Su Wang, Lian-Sheng Zang

Insects have evolved a spectrum of strategies that facilitate survival in the face of adverse environmental conditions and bottom-up or top-down pressures. The egg is the first stage in the life cycle of most insects. It is not only immobile but in many insects is the stage that survives unfavourable seasons when food resources are unavailable. Eggs are targeted by oophagous natural enemies and also are subject to abiotic stresses. In response to these diverse stresses, insects have developed various egg protection strategies. Females of many insects lay eggs in clusters and then use their own body resources to cover them to provide protection from harsh environments and biotic attack. Such egg protection strategies have allowed some herbivorous insects to thrive in new environments and become serious invasive pests. Females of many insects protect their eggs in other ways (e.g. laying eggs in concealed places, direct parental care) while others do not provide protection at all. Here, we review various egg protective strategies in insects. Our focus is on adaptive ecological mechanisms and temporal variation as well as the benefits and costs of egg coverings. We highlight several case studies on how these egg protective traits might impede biological control of globally important agricultural and forest pests and propose a framework for incorporating egg protective traits into biological control programs especially for invasive insect pests.

面对不利的环境条件以及自下而上或自上而下的压力,昆虫进化出了一系列有利于生存的策略。卵是大多数昆虫生命周期的第一阶段。它不仅不能移动,而且在许多昆虫中,当食物资源匮乏的不利季节,它是存活下来的阶段。卵是食性天敌的目标,也会受到非生物压力的影响。为了应对这些不同的压力,昆虫开发了各种保护卵的策略。许多昆虫的雌虫将卵产于簇中,然后利用自身的身体资源覆盖卵,以保护卵免受恶劣环境和生物攻击。这种卵保护策略使一些食草昆虫在新环境中茁壮成长,并成为严重的入侵害虫。许多昆虫的雌性以其他方式保护卵(例如在隐蔽处产卵、直接的亲代照料),而其他昆虫则完全不提供保护。在此,我们回顾了昆虫的各种卵保护策略。我们的重点是适应性生态机制和时间变化,以及卵覆盖的益处和代价。我们重点介绍了几个案例研究,说明这些卵保护性如何可能阻碍对全球重要农业和森林害虫的生物防治,并提出了一个将卵保护性纳入生物防治计划的框架,尤其是针对入侵性害虫的生物防治计划。
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引用次数: 0
Mate assessment based on physical characteristics: a review and reflection. 基于生理特征的配偶评估:回顾与反思。
IF 11 1区 生物学 Q1 BIOLOGY Pub Date : 2024-08-22 DOI: 10.1111/brv.13131
Christopher D Watkins

Mate choice, and sex differences in romantic behaviours, represented one of the first major applications of evolutionary biology to human behaviour. This paper reviews Darwinian approaches to heterosexual mate assessment based on physical characteristics, placing the literature in its historical context (1871-1979), before turning (predominantly) to psychological research on attractiveness judgements based on physical characteristics. Attractiveness is consistently inferred across multiple modalities, with biological theories explaining why we differentiate certain individuals, on average, from others. Simultaneously, it is a judgement that varies systematically in light of our own traits, environment, and experiences. Over 30 years of research has generated robust effects alongside reasons to be humble in our lack of understanding of the precise physiological mechanisms involved in mate assessment. This review concludes with three questions to focus attention in further research, and proposes that our romantic preferences still provide a critical window into the evolution of human sexuality.

配偶选择和恋爱行为中的性别差异是进化生物学在人类行为中的首次重大应用。本文回顾了达尔文基于生理特征对异性配偶进行评估的方法,将相关文献置于其历史背景下(1871-1979 年),然后(主要)转向基于生理特征的吸引力判断的心理学研究。吸引力是通过多种方式一致推断出来的,生物学理论解释了为什么我们会平均地将某些人与其他人区分开来。同时,这种判断也会根据我们自身的特征、环境和经历而发生系统性的变化。经过 30 多年的研究,我们对配偶评估所涉及的精确生理机制缺乏了解,但同时我们也有理由保持谦虚,因为这些研究产生了强有力的效果。这篇综述最后提出了三个问题,供进一步研究时重点关注,并提出我们的浪漫偏好仍然是人类性进化的一个重要窗口。
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引用次数: 0
A meta-analysis on alternative mating tactics: when the main and the alternative yield similar reproductive success. 关于替代交配策略的荟萃分析:当主要交配策略和替代交配策略产生相似的繁殖成功率时。
IF 11 1区 生物学 Q1 BIOLOGY Pub Date : 2024-08-22 DOI: 10.1111/brv.13129
Amanda V Da Silva, João Gabriel L De Almeida, Stefânia P R Ventura, Reisla Oliveira, Paulo Enrique C Peixoto
<p><p>In many species, individuals of the same sex exhibit different mating behaviours, a phenomenon known as alternative mating tactics (AMTs). These AMTs may occur in species in which morphology prevents individuals from adopting different tactics (fixed expression of AMTs) as well as in species in which individuals can alternate between them (flexible expression of AMTs). Regardless of the way different mating tactics are expressed, a key point to understanding the selective forces driving AMT evolution relies on identifying differences in the reproductive success between tactics. Empirical studies often indicate that individuals adopting the main tactic (generally the more aggressive) have higher mating success than those adopting the secondary tactic. However, while this is expected for species showing flexible expression of AMTs, the same should not hold for species showing fixed expression of AMTs. In species with fixed expression of AMTs, individuals adopting each tactic have morphological specialisations in acquiring mates that may be responsible for eliminating differences in reproductive success between tactics. Despite such expectations, a comprehensive investigation across species regarding differences in the reproductive success of AMTs is lacking. Using a meta-analytical approach, we investigated if there is a difference in the reproductive success between tactics and whether this difference is related to how these tactics are expressed (fixed or flexible). We focused on males since information on reproductive success for females with AMTs is still scarce. We hypothesised that (i) males adopting the main tactic have higher reproductive success than males adopting the secondary tactic, and (ii) the difference in reproductive success between tactics will be higher in species with flexible rather than fixed expression of AMTs. When all species were pooled, we found that males adopting the main tactic had a similar reproductive success to males adopting the secondary mating tactic. However, this trend changed between species with fixed and flexible expression of AMTs. In species with flexible expression of AMTs, males exhibiting the main tactic have higher mating success than those adopting secondary tactics, while in species with fixed expression of AMTs, males adopting distinct tactics have similar reproductive success. Thus, the widespread assumption that males adopting the main tactic have higher reproductive success than males adopting the secondary tactic may be restricted to species in which individuals can alternate between tactics during their lifespan. However, we found that most data on the reproductive success of males adopting AMTs is restricted to short reproductive windows and may not reflect differences in lifetime reproductive success between tactics. Therefore, we highlight the importance of examining the selective pressures associated with fixed and flexible expression of AMTs on lifetime reproductive success to atta
在许多物种中,同性个体会表现出不同的交配行为,这种现象被称为替代交配策略(AMTs)。这些交配策略可能出现在形态上阻止个体采取不同交配策略的物种中(交配策略的固定表现形式),也可能出现在个体可以交替采取不同交配策略的物种中(交配策略的灵活表现形式)。无论不同交配策略的表达方式如何,要理解驱动AMT进化的选择性力量,关键在于识别不同策略在繁殖成功率上的差异。经验性研究通常表明,采用主要策略(通常更具攻击性)的个体比采用次要策略的个体具有更高的交配成功率。然而,虽然这对灵活表达 AMTs 的物种来说是意料之中的,但对固定表达 AMTs 的物种来说却不应该如此。在AMTs有固定表达的物种中,采用每种策略的个体在获得配偶时都有形态特异性,这可能是消除不同策略之间繁殖成功率差异的原因。尽管有这样的预期,但目前还缺乏对不同物种中AMT生殖成功率差异的全面调查。我们采用荟萃分析方法,研究了不同策略之间的繁殖成功率是否存在差异,以及这种差异是否与这些策略的表达方式(固定或灵活)有关。我们的研究重点是雄性动物,因为有关雌性AMT繁殖成功率的信息仍然很少。我们的假设是:(i) 采用主要策略的雄性的繁殖成功率要高于采用次要策略的雄性;(ii) 不同策略之间的繁殖成功率差异在AMT表达方式灵活而非固定的物种中会更大。将所有物种汇总后,我们发现采用主要交配策略的雄性的繁殖成功率与采用次要交配策略的雄性相似。然而,这一趋势在AMTs表达固定和灵活的物种之间发生了变化。在AMTs表达灵活的物种中,采取主要策略的雄性的交配成功率高于采取次要策略的雄性,而在AMTs表达固定的物种中,采取不同策略的雄性的繁殖成功率相似。因此,普遍认为采用主要策略的雄性个体比采用次要策略的雄性个体具有更高的繁殖成功率的观点可能仅限于个体在其生命周期中可以交替采用不同策略的物种。然而,我们发现大多数关于雄性采用AMT的繁殖成功率的数据仅限于短时间的繁殖窗口,可能并不能反映不同策略之间终生繁殖成功率的差异。因此,我们强调了研究固定和灵活表达AMT对终生生殖成功率的选择性压力对深入了解AMT进化的重要性。
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引用次数: 0
Treating gaps and biases in biodiversity data as a missing data problem. 将生物多样性数据中的差距和偏差视为缺失数据问题。
IF 11 1区 生物学 Q1 BIOLOGY Pub Date : 2024-08-08 DOI: 10.1111/brv.13127
Diana E Bowler, Robin J Boyd, Corey T Callaghan, Robert A Robinson, Nick J B Isaac, Michael J O Pocock

Big biodiversity data sets have great potential for monitoring and research because of their large taxonomic, geographic and temporal scope. Such data sets have become especially important for assessing temporal changes in species' populations and distributions. Gaps in the available data, especially spatial and temporal gaps, often mean that the data are not representative of the target population. This hinders drawing large-scale inferences, such as about species' trends, and may lead to misplaced conservation action. Here, we conceptualise gaps in biodiversity monitoring data as a missing data problem, which provides a unifying framework for the challenges and potential solutions across different types of biodiversity data sets. We characterise the typical types of data gaps as different classes of missing data and then use missing data theory to explore the implications for questions about species' trends and factors affecting occurrences/abundances. By using this framework, we show that bias due to data gaps can arise when the factors affecting sampling and/or data availability overlap with those affecting species. But a data set per se is not biased. The outcome depends on the ecological question and statistical approach, which determine choices around which sources of variation are taken into account. We argue that typical approaches to long-term species trend modelling using monitoring data are especially susceptible to data gaps since such models do not tend to account for the factors driving missingness. To identify general solutions to this problem, we review empirical studies and use simulation studies to compare some of the most frequently employed approaches to deal with data gaps, including subsampling, weighting and imputation. All these methods have the potential to reduce bias but may come at the cost of increased uncertainty of parameter estimates. Weighting techniques are arguably the least used so far in ecology and have the potential to reduce both the bias and variance of parameter estimates. Regardless of the method, the ability to reduce bias critically depends on knowledge of, and the availability of data on, the factors creating data gaps. We use this review to outline the necessary considerations when dealing with data gaps at different stages of the data collection and analysis workflow.

生物多样性大数据集因其庞大的分类、地理和时间范围,在监测和研究方面具有巨大潜力。这些数据集对于评估物种种群和分布的时间变化尤为重要。可用数据的缺口,尤其是空间和时间缺口,往往意味着数据不能代表目标种群。这妨碍了大规模推断,如物种的发展趋势,并可能导致错误的保护行动。在此,我们将生物多样性监测数据的缺口概念化为数据缺失问题,为不同类型的生物多样性数据集所面临的挑战和潜在解决方案提供了一个统一的框架。我们将数据缺口的典型类型描述为不同类别的缺失数据,然后利用缺失数据理论来探讨有关物种趋势和影响出现/丰度因素的问题的影响。通过使用这一框架,我们表明,当影响采样和/或数据可用性的因素与影响物种的因素重叠时,就会出现数据缺失导致的偏差。但数据集本身并不存在偏差。结果取决于生态问题和统计方法,它们决定了对哪些变异来源进行考虑。我们认为,利用监测数据建立长期物种趋势模型的典型方法特别容易受到数据缺口的影响,因为这类模型往往不会考虑导致数据缺失的因素。为了找出这一问题的一般解决方案,我们回顾了实证研究,并利用模拟研究比较了一些最常用的处理数据缺口的方法,包括子采样、加权和估算。所有这些方法都有可能减少偏差,但可能会以增加参数估计的不确定性为代价。加权技术可以说是迄今为止生态学中使用最少的方法,但却有可能减少参数估计的偏差和方差。无论采用哪种方法,减少偏差的能力关键取决于对造成数据缺口的因素的了解和相关数据的可用性。我们通过这篇综述概述了在数据收集和分析工作流程的不同阶段处理数据缺口时的必要考虑因素。
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引用次数: 0
Behavioural differences and similarities between dog breeds: proposing an ecologically valid approach for canine behavioural research. 犬种之间的行为差异和相似性:为犬类行为研究提出一种生态学上有效的方法。
IF 11 1区 生物学 Q1 BIOLOGY Pub Date : 2024-08-05 DOI: 10.1111/brv.13128
Péter Pongrácz, Petra Dobos

The behaviour of dogs holds great relevance for not only scientists from fundamental and applied research areas, but also due to the widespread roles of dogs in our societies as companions and working animals; their behaviour is also an important factor in animal and human welfare. A large proportion of dogs currently under human supervision belong to one of roughly 400 recognised breeds. Dog breeds can be characterised by distinctive, predictable and reproducible features, including some of their behavioural traits. To the scientist, the comparative analysis of the behaviour of dog breeds provides an opportunity for investigating an array of intriguing phenomena within an easily accessible model organism created from natural and human-driven evolutionary processes. There are many ways to design and conduct breed-related behavioural investigations, but such endeavours should always be based around biologically relevant research questions and lead to ecologically valid conclusions. In this review, we surveyed recent research efforts that included dog behaviour-related comparisons and applied a critical evaluation according to their methods of breed choice and the subsequent research design. Our aim was to assess whether these two fundamentally important components of experimental design provide a solid basis to reach valid conclusions. Based on 97 publications that fulfilled our selection criteria, we identified three primary methods used by researchers to select breeds for their investigations: (i) convenience sampling; (ii) hypothesis-driven, ancestry-based sampling; and (iii) hypothesis-driven, functional sampling. By using the SWOT (Strengths, Weaknesses, Opportunities, Threats) evaluation system, we highlight each of these techniques' merits and shortcomings. We identify when particular methods may be inherently unable to produce biologically meaningful results due to a mismatch between breed choice and the initial research goals. We hope that our evaluation will help researchers adopt best practices in experimental design regarding future dog breed comparisons.

狗的行为不仅与基础研究和应用研究领域的科学家息息相关,而且由于狗在我们的社会中广泛扮演着伴侣和工作动物的角色;它们的行为也是动物和人类福利的一个重要因素。目前在人类监管下的大部分狗都属于大约 400 个公认的品种之一。狗的品种可以通过独特、可预测和可复制的特征来描述,包括它们的一些行为特征。对于科学家来说,对狗品种的行为进行比较分析为研究一系列有趣的现象提供了机会,而这些现象又是在自然和人类驱动的进化过程中创造出来的、易于获得的模型生物体。设计和进行与犬种相关的行为调查的方法有很多,但这些工作应始终围绕与生物学相关的研究问题进行,并得出生态学上有效的结论。在这篇综述中,我们调查了最近开展的与狗的行为有关的比较研究,并根据其品种选择方法和随后的研究设计进行了批判性评估。我们的目的是评估实验设计的这两个基本重要组成部分是否为得出有效结论提供了坚实的基础。根据符合我们选择标准的 97 篇出版物,我们确定了研究人员用于选择研究品种的三种主要方法:(i) 方便抽样;(ii) 假设驱动、基于祖先的抽样;以及 (iii) 假设驱动、功能性抽样。通过使用 SWOT(优势、劣势、机会、威胁)评估系统,我们强调了每种技术的优点和缺点。我们确定了特定方法何时会因品种选择与最初研究目标不匹配而无法产生具有生物学意义的结果。我们希望我们的评估能够帮助研究人员在未来的犬种比较中采用最佳的实验设计方法。
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