The innate immune response is under selection pressures from changing environments and pathogens. While sequence evolution can be studied by comparing rates of amino acid mutations within and between species, how a gene's birth and death contribute to the evolution of immunity is less known. Short open reading frames, once regarded as untranslated or transcriptional noise, can often produce micropeptides of <100 amino acids with a wide array of biological functions. Some micropeptide sequences are well conserved, whereas others have no evolutionary conservation, potentially representing new functional compounds that arise from species-specific adaptations. To date, few reports have described the discovery of novel micropeptides of the innate immune system. The diversity of immune-related micropeptides is a blind spot for gene and functional annotation. Immune-related micropeptides represent a potential reservoir of untapped compounds for understanding and treating disease. This review consolidates what is currently known about the evolution and function of innate immune-related micropeptides to facilitate their investigation.
{"title":"Microscopic marvels: Decoding the role of micropeptides in innate immunity","authors":"Praveena Naidu, Mandë Holford","doi":"10.1111/imm.13850","DOIUrl":"10.1111/imm.13850","url":null,"abstract":"<p>The innate immune response is under selection pressures from changing environments and pathogens. While sequence evolution can be studied by comparing rates of amino acid mutations within and between species, how a gene's birth and death contribute to the evolution of immunity is less known. Short open reading frames, once regarded as untranslated or transcriptional noise, can often produce micropeptides of <100 amino acids with a wide array of biological functions. Some micropeptide sequences are well conserved, whereas others have no evolutionary conservation, potentially representing new functional compounds that arise from species-specific adaptations. To date, few reports have described the discovery of novel micropeptides of the innate immune system. The diversity of immune-related micropeptides is a blind spot for gene and functional annotation. Immune-related micropeptides represent a potential reservoir of untapped compounds for understanding and treating disease. This review consolidates what is currently known about the evolution and function of innate immune-related micropeptides to facilitate their investigation.</p>","PeriodicalId":13508,"journal":{"name":"Immunology","volume":"173 4","pages":"605-621"},"PeriodicalIF":4.9,"publicationDate":"2024-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/imm.13850","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142072704","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Personalized neoantigen therapy has shown long-term and stable efficacy in specific patient populations. However, not all patients have sufficient levels of neoantigens for treatment. Although somatic mutations are commonly found in tumours, a significant portion of these mutations do not trigger an immune response. Patients with low mutation burdens continue to exhibit unresponsiveness to this treatment. We propose a design paradigm for neoantigen vaccines by utilizing the highly immunogenic unnatural amino acid p-nitrophenylalanine (pNO2Phe) for sequence alteration of somatic mutations that failed to generate neoepitopes. This enhances the immunogenicity of the mutations and transforms it into a suitable candidate for immunotherapy. The nitrated altered epitope vaccines designed according to this paradigm is capable of activating circulating CD8+ T cells and inducing immune cross-reactivity against autologous mutated epitopes in different MHC backgrounds (H-2Kb, H-2Kd, and human HLA-A02:01), leading to the elimination of tumour cells carrying the mutation. After immunization with the altered epitopes, tumour growth was significantly inhibited. It is noteworthy that nitrated epitopes induce tumour-infiltrating macrophages to differentiate into the M1 phenotype, surprisingly enhancing the MHC II molecule presenting pathway of macrophages. Nitrated epitope-treated macrophages have the potential to cross-activate CD4+ and CD8+ T cells, which may explain why pNO2Phe can enhance the immunogenicity of epitopes. Meanwhile, the immunosuppressive microenvironment of the tumour is altered due to the activation of macrophages. The nitrated neoantigen vaccine strategy enables the design of vaccines targeting non-immunogenic tumour mutations, expanding the pool of potential peptides for personalized and shared novel antigen therapy. This approach provides treatment opportunities for patients previously ineligible for new antigen vaccine therapy.
个性化新抗原疗法已在特定患者群体中显示出长期稳定的疗效。然而,并非所有患者都有足够水平的新抗原进行治疗。虽然肿瘤中普遍存在体细胞突变,但其中很大一部分突变不会引发免疫反应。突变负荷低的患者对这种治疗仍然没有反应。我们提出了一种新抗原疫苗的设计范式,即利用免疫原性高的非天然氨基酸对硝基苯丙氨酸(pNO2Phe)来改变未能产生新表位的体细胞突变的序列。这增强了突变的免疫原性,使其成为免疫疗法的合适候选药物。根据这一范例设计的硝化改变表位疫苗能够激活循环 CD8+ T 细胞,诱导对不同 MHC 背景(H-2Kb、H-2Kd 和人类 HLA-A02:01)的自体突变表位的免疫交叉反应,从而消除携带突变的肿瘤细胞。用改变后的表位免疫后,肿瘤生长明显受到抑制。值得注意的是,硝化表位诱导肿瘤浸润巨噬细胞分化成 M1 表型,令人惊讶地增强了巨噬细胞的 MHC II 分子呈现途径。硝化表位处理过的巨噬细胞有可能交叉激活 CD4+ 和 CD8+ T 细胞,这可能解释了为什么 pNO2Phe 可以增强表位的免疫原性。同时,由于巨噬细胞的活化,肿瘤的免疫抑制微环境也发生了改变。硝化新抗原疫苗策略能够设计出针对非免疫原性肿瘤突变的疫苗,扩大了个性化和共享新型抗原疗法的潜在多肽库。这种方法为以前不符合新抗原疫苗治疗条件的患者提供了治疗机会。
{"title":"Altered epitopes enhance macrophage-mediated anti-tumour immunity to low-immunogenic tumour mutations","authors":"Qiumin Yu, Tingran Zhang, Tiandi He, Yifan Yang, Wanli Zhang, Yanliang Kang, Zijie Wu, Wenbin Xie, Jiaxue Zheng, Qianqian Qian, Guozhi Li, Di Zhang, Qiuli Mao, Zheng Gao, Xiaoning Wang, Xupeiyao Shi, Shitong Huang, Hanlin Guo, Haoyu Zhang, Lingxiao Chen, Ximing Li, Danni Deng, Li Zhang, Yue Tong, Wenbing Yao, Xiangdong Gao, Hong Tian","doi":"10.1111/imm.13854","DOIUrl":"10.1111/imm.13854","url":null,"abstract":"<p>Personalized neoantigen therapy has shown long-term and stable efficacy in specific patient populations. However, not all patients have sufficient levels of neoantigens for treatment. Although somatic mutations are commonly found in tumours, a significant portion of these mutations do not trigger an immune response. Patients with low mutation burdens continue to exhibit unresponsiveness to this treatment. We propose a design paradigm for neoantigen vaccines by utilizing the highly immunogenic unnatural amino acid p-nitrophenylalanine (pNO<sub>2</sub>Phe) for sequence alteration of somatic mutations that failed to generate neoepitopes. This enhances the immunogenicity of the mutations and transforms it into a suitable candidate for immunotherapy. The nitrated altered epitope vaccines designed according to this paradigm is capable of activating circulating CD8<sup>+</sup> T cells and inducing immune cross-reactivity against autologous mutated epitopes in different MHC backgrounds (H-2K<sup>b</sup>, H-2K<sup>d</sup>, and human HLA-A02:01), leading to the elimination of tumour cells carrying the mutation. After immunization with the altered epitopes, tumour growth was significantly inhibited. It is noteworthy that nitrated epitopes induce tumour-infiltrating macrophages to differentiate into the M1 phenotype, surprisingly enhancing the MHC II molecule presenting pathway of macrophages. Nitrated epitope-treated macrophages have the potential to cross-activate CD4<sup>+</sup> and CD8<sup>+</sup> T cells, which may explain why pNO<sub>2</sub>Phe can enhance the immunogenicity of epitopes. Meanwhile, the immunosuppressive microenvironment of the tumour is altered due to the activation of macrophages. The nitrated neoantigen vaccine strategy enables the design of vaccines targeting non-immunogenic tumour mutations, expanding the pool of potential peptides for personalized and shared novel antigen therapy. This approach provides treatment opportunities for patients previously ineligible for new antigen vaccine therapy.</p>","PeriodicalId":13508,"journal":{"name":"Immunology","volume":"173 4","pages":"654-671"},"PeriodicalIF":4.9,"publicationDate":"2024-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142035754","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tays Troncoso-Bravo, Mario A. Ramírez, Ricardo A. Loaiza, Carolina Román-Cárdenas, Georgios Papazisis, Daniel Garrido, Pablo A. González, Susan M. Bueno, Alexis M. Kalergis
Acute respiratory infections are the leading cause of death and illness in children under 5 years old and represent a significant burden in older adults. Primarily caused by viruses infecting the lower respiratory tract, symptoms include cough, congestion, and low-grade fever, potentially leading to bronchiolitis and pneumonia. Messenger ribonucleic acid (mRNA)-based vaccines are biopharmaceutical formulations that employ mRNA molecules to induce specific immune responses, facilitating the expression of viral or bacterial antigens and promoting immunization against infectious diseases. Notably, this technology had significant relevance during the COVID-19 pandemic, as these formulations helped to limit SARS-CoV-2 virus infections, hospitalizations, and deaths. Importantly, mRNA vaccines promise to be implemented as new alternatives for fighting other respiratory viruses, such as influenza, human respiratory syncytial virus, and human metapneumovirus. This review article analyzes mRNA-based vaccines' main contributions, perspectives, challenges, and implications against respiratory viruses.
{"title":"Advancement in the development of mRNA-based vaccines for respiratory viruses","authors":"Tays Troncoso-Bravo, Mario A. Ramírez, Ricardo A. Loaiza, Carolina Román-Cárdenas, Georgios Papazisis, Daniel Garrido, Pablo A. González, Susan M. Bueno, Alexis M. Kalergis","doi":"10.1111/imm.13844","DOIUrl":"10.1111/imm.13844","url":null,"abstract":"<p>Acute respiratory infections are the leading cause of death and illness in children under 5 years old and represent a significant burden in older adults. Primarily caused by viruses infecting the lower respiratory tract, symptoms include cough, congestion, and low-grade fever, potentially leading to bronchiolitis and pneumonia. Messenger ribonucleic acid (mRNA)-based vaccines are biopharmaceutical formulations that employ mRNA molecules to induce specific immune responses, facilitating the expression of viral or bacterial antigens and promoting immunization against infectious diseases. Notably, this technology had significant relevance during the COVID-19 pandemic, as these formulations helped to limit SARS-CoV-2 virus infections, hospitalizations, and deaths. Importantly, mRNA vaccines promise to be implemented as new alternatives for fighting other respiratory viruses, such as influenza, human respiratory syncytial virus, and human metapneumovirus. This review article analyzes mRNA-based vaccines' main contributions, perspectives, challenges, and implications against respiratory viruses.</p>","PeriodicalId":13508,"journal":{"name":"Immunology","volume":"173 3","pages":"481-496"},"PeriodicalIF":4.9,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/imm.13844","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142004164","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cover illustration: The cover image is based on the article Immunotherapy and the ovarian cancer microenvironment: Exploring potential strategies for enhanced treatment efficacy by Zhi-Bin Wang et al., https://doi.org/10.1111/imm.13793.