Integrative zoology最新文献

The family Erinaceidae encompasses 27 extant species in two subfamilies: Erinaceinae, which includes spiny hedgehogs, and Galericinae, which comprises silky-furred gymnures and moonrats. Although they are commonly recognized by the general public, their phylogenetic history remains incompletely understood, and several species have never been included in any molecular analyses. Additionally, previous research suggested that the species diversity of Erinaceidae might be underestimated. In this study, we sequenced the mitochondrial genomes of 29 individuals representing 18 erinaceid species using 18 freshly collected tissue and 11 historical museum specimens. We also integrated previously published data for a concatenated analysis. We aimed to elucidate the evolutionary relationships within Erinaceidae, estimate divergence times, and uncover potential underestimated species diversity. Our data finely resolved intergeneric and interspecific relationships and presented the first molecular evidence for the phylogenetic position of Mesechinus wangi, Paraechinus micropus, and P. nudiventris. Our results revealed a sister relationship between Neotetracus and Neohylomys gymnures, as well as a sister relationship between Hemiechinus and Mesechinus, supporting previous hypotheses. Additionally, our findings provided a novel phylogenetic position for Paraechinus aethiopicus, placing it in a basal position within the genus. Furthermore, our study uncovered cryptic species diversity within Hylomys suillus as well as in Neotetracus sinensis, Atelerix albiventris, P. aethiopicus, and Hemiechinus auratus, most of which have been previously overlooked.

Urbanization is a global phenomenon that involves the transformation of natural areas into urban spaces, thereby subjecting organisms to new selective pressures including a wide variety of pollutants and changes in intra- and interspecific interactions. Considering that projections indicate that by the year 2050, 65% of the human population will live in urban areas and that urbanization is a phenomenon with an upward pattern, identifying these phenotypic traits is vital to implementing conservation and management plans for urban fauna. The urban environment may exert different selective pressures on sexually selected traits than more pristine environments, a phenomenon which has been well studied in birds but is less understood in other vertebrates such as lizards, although they are common inhabitants of urban environments. Here, we compare sexual coloration, parasite load, and immune response in Sceloporus torquatus lizards in urban and non-urban environments of Central Mexico. Our study shows that sexual coloration is more saturated (bluer) in male lizards from urban environments, while UV chroma was higher in non-urban lizards. The average parasite load is lower in urban lizards than in non-urban lizards, and we found a negative relationship between hemoparasite count and sexual coloration in male lizards from non-urban environments but not in male lizards from urban environments. Additionally, non-urban lizards exhibited a higher immune response. In female lizards, sexual coloration differed significantly between urban and non-urban environments, but parasite load and immune response did not differ. These results may be useful to improve herpetofauna conservation plans in urbanized environments.

Facial expressions in nonhuman primates are complex processes involving psychological, emotional, and physiological factors, and may use subtle signals to communicate significant information. However, uncertainty surrounds the functional significance of subtle facial expressions in animals. Using artificial intelligence (AI), this study found that nonhuman primates exhibit subtle facial expressions that are undetectable by human observers. We focused on the golden snub-nosed monkeys (Rhinopithecus roxellana), a primate species with a multilevel society. We collected 3427 front-facing images of monkeys from 275 video clips captured in both wild and laboratory settings. Three deep learning models, EfficientNet, RepMLP, and Tokens-To-Token ViT, were utilized for AI recognition. To compare the accuracy of human performance, two groups were recruited: one with prior animal observation experience and one without any such experience. The results showed human observers to correctly detect facial expressions (32.1% for inexperienced humans and 45.0% for experienced humans on average with a chance level of 33%). In contrast, the AI deep learning models achieved significantly higher accuracy rates. The best-performing model achieved an accuracy of 94.5%. Our results provide evidence that golden snub-nosed monkeys exhibit subtle facial expressions. The results further our understanding of animal facial expressions and also how such modes of communication may contribute to the origin of complex primate social systems.

The Yarlung Tsangpo River on the Tibetan Plateau provides a unique natural environment for studying fish evolution and ecology. However, the genomes and genetic diversity of plateau fish species have been rarely reported. Schizopygopsis younghusbandi, a highly specialized Schizothoracine species and economically important fish inhabiting the Yarlung Tsangpo River, is threatened by overfishing and biological invasion. Herein, we generated a chromosome-level genome of S. younghusbandi and whole-genome resequencing data for 59 individuals from six locations of the river. The results showed that the divergence time between S. younghusbandi and other primitive Schizothoracine species was ∼4.2 Mya, coinciding with the major phase of the Neogene Tibetan uplift. The expanded gene families enriched in DNA integration and replication, ion binding and transport, energy storage, and metabolism likely contribute to the adaption of this species. The S. younghusbandi may have diverged from other highly specialized Schizothoracine species in the Zanda basin during the Pliocene epoch, which underwent major population reduction possibly due to the drastic climate change during the last glacial period. Population analysis indicated that the ancient population might have originated upstream before gradually adapting to evolve into the populations inhabiting the mid-stream and downstream regions of the Yarlung Tsangpo River. In conclusion, the chromosome-level genome and population diversity of S. younghusbandi provide valuable genetic resources for the evolution, ecology, and conservation studies of endemic fishes on the Tibetan Plateau.

Many bird species in montane regions display altitudinal migration, but so far, the underlying ecological driving mechanisms are not clear. We studied the altitudinal migration behavior patterns and factors influencing altitudinal migration in the Xiling Snow Mountains, which are part of the Hengduan mountain range in southwest China. We recorded the local bird diversity, the seasonal change of: the average temperature (AT), the average humidity (AH), the average invertebrate biomass (AIB), and the amount of plant food sources (PFS) at two study sites (∼1300 and ∼2100 m a.s.l.) during two migration seasons from September 2022 to May 2023. During our surveys, we recorded 96 bird species in total. Among these, 15 altitudinal migrants were identified. The most common family among altitudinal migrants was Leiothrichidae. AT, AIB, and PFS had a significant positive correlation with the monthly number of individuals (MNI) several bird species, implying that increasing temperatures and an increasing abundance of invertebrates and PFS possibly induced upward migration of altitudinal migrants and vice versa. AH possibly only played a minor role in influencing altitudinal migration, since it exhibited no significant correlation with the MNI. Furthermore, we found that the upward migration temperature range of altitudinal migrants ranged between 9.8°C and 13.9°C during spring and the downward migration temperature range ranged between 12.2°C and 7.9°C during autumn. In conclusion, our study and several other studies revealed that the same environmental factors influenced the altitudinal migration patterns of birds in the Hengduan Mountains.

Animals may experience early negative (mechanical pain: being retrieved using an incisor by parents or attacked) or positive stimulation (being licked and groomed) that may affect emotional and social behaviors in adulthood. Whether positive tactile stimulation can reverse adverse consequences on emotional and social behaviors in adulthood resulting from chronic mechanical pain and underlying mechanisms remain unclear. This study used a tail-pinching model during development to simulate mechanical pain experienced by pups in high-social mandarin voles (Microtus mandarinus). Subsequently, brush-like positive tactile stimuli were applied to the backs of the mandarin voles. Various behavioral tests were used to measure levels of anxiety, depression, and sociability. The results showed that early tail-pinching delayed the eye opening of pups, increased levels of anxiety, reduced levels of sociality in male mandarin voles, and impaired social cognition in females during adulthood. Brushing on the back reversed some of these effects. While mandarin voles that were exposed to tail-pinching during development were exposed to sub-threshold variable stress as adults, they were more likely to show a stress-induced increase of anxiety-like behavior, reduction of sociability, and impairment of social cognition, displaying heightened susceptibility to stress, particularly in males. However, back-brushing reversed some of these effects, implying that these adults display enhanced stress resilience. In addition, tail-pinching reduced levels of serum oxytocin and increased corticosterone levels in serum, but back-brushing reversed these effects. Overall, it was found that positive tactile stimulation reversed increases in anxiety and impairments of social behavior induced by negative stimulation in male mandarin voles via alteration of oxytocin and corticosterone levels.

Urban environments often present environmental conditions that facilitate the introduction and establishment of nonnative and invasive species. These can expand their range into areas with unfavorable climates by taking advantage of the ecological and climatic homogenization of cities, bypassing the ecological barriers presented by the surrounding environment. One way to monitor the expansion of these species is using potential distribution models. We used as a model species the Argentine ant, Linepithema humile (Hymenoptera: Formicidae) whose invasion has caused serious consequences for biodiversity and economic losses worldwide. We used the average result of six different algorithms and used climatic variables and population density as a proxy for the urbanization level in the Western Palearctic to build the predictive model. The model indicates this ant prefers to inhabit areas with Mediterranean and Temperate Oceanic climates and that its suitability depends on two main factors: the continentality (temperature annual range) and the degree of urbanization. The species is predicted to be absent in areas with large temperature contrasts throughout the year, particularly in rural and peri-urban areas (i.e. adjacent to urban areas) of inland regions. Conversely, the species has a predilection for coastal and urban areas where environmental conditions are attenuated by the influence of the sea or the "urban heat island" effect in the case of inland cities. In this sense, cities act as "bioclimatic islands" facilitating the establishment of the Argentine ant as a reservoir, enlarging its distribution into climatically nonoptimal areas, and promoting its future expansion in a scenario of global warming and socioeconomic change.

Rodents are important seed dispersers of plants because they move seeds far away from the parent trees and hoard seeds in the soil, benefiting seed dispersal and regeneration. Traits of plant seeds and animals are associated with rodent-mediated seed dispersal, but animal personality, the consistent individual behavioral differences in time and environments, has not been fully considered. Here, we first measured the personality of 26 Niviventer confucianus in the laboratory, and 10 individuals in the field of one population, and then tested their behavior of seed consumption and hoarding both in semi-natural enclosures and the field. We tested the hypothesis that individuals with different personalities have different preferences for seed consumption and hoarding, which has different implications for seed dispersal and regeneration. Under the enclosure conditions, all parameters of personality are repeatable; bold individuals harvested fewer seeds but scatter-hoarded more seeds and dispersed farther than timid ones, whereas active individuals consumed more seeds, but left fewer seeds on the ground surface than inactive ones. In the field, boldness, activity, and exploration of the animals are repeatable; bold individuals scatter-hoarded more seeds to farther distances than timid ones, whereas active individuals harvested and consumed more seeds than inactive ones. These results suggest that bold rats tended to scatter hoard seeds and disperse them to a longer distance, implying they are more effective in seed dispersal. In the future, animal personality (e.g. boldness and activity) should be considered in seed dispersal studies and ecological-based manipulation in seed dispersal and regeneration of forests.