Integrative zoology最新文献

The acoustic ecology of a previously unexamined dolphin population in the Mediterranean was assessed by investigating how sound emissions and acoustic features are influenced by concurrent conditions. Whistles and click-trains emission rates were compared among different environmental, social and behavioural conditions. Structural variability of 3928 good/high-quality vocalizations was analysed in relation to contexts through a two-stage approach. First, two multivariate MANOVA-models were fitted considering the entire set of acoustic parameters extracted from whistles and click trains, to investigate the effect of concomitant factors on the overall acoustic structure of each vocalization. Subsequently, GLMM models were applied to each acoustic feature individually to explore its response to different contextual factors. Emission rates increased significantly with calves and in larger groups, with also a positive effect of socialization on whistles and of muddy/sandy seabed and depth on impulsive sounds. The multivariate approach showed that all contextual factors influenced sounds' structure, with whistles being strongly affected by behaviour and calves' presence. The GLMM models highlighted that each acoustic parameter varied differently in response to specific factors, with (1) increasing trends in whistles' duration and inflection points during interaction with fishery and decreasing ones during socializing, and (2) decreasing inter-click-intervals and increasing click-repetition-rates in larger groups and during interactions with fishery. These results provide new findings on the acoustic plasticity of bottlenose dolphins and a more comprehensive view of the magnitude of the social, environmental and behavioural influence, highlighting how the complexity of the species' acoustic repertoire has yet to be unravelled at the local level.

It is commonly admitted that the continuous development of human infrastructure (HI), resulting in natural habitat fragmentation, affects farmland birds by misleading their strategies of nest site selection. Here, we examined how HI in agricultural landscape (AL) could be affecting nest habitat selection of Barbary partridge (BP; Alectoris barbara). A total of 160 BP nests were monitored during 4 years (2017, 2018, 2021, and 2022) in eight Moroccan agricultural zones. We used the generalized linear mixed models and variation partitioning methods to quantify the effects of AL and HI on BP nest occurrence. This occurrence increased with track density (within 300 m of sampled nests) and decreased with built-up area cover (50 m). Nest occurrence was also associated with the cover of agricultural areas (300 m), distances to the nearest agricultural area, the nearest human settlement, and the nearest track. However, the effect of these covariates depended on distance to the nearest paved road, being close to roads located far away from agricultural areas and tracks and near human settlements and tracks. Overall, our results highlighted a trend to nest close to HI when agricultural areas were relatively remote or less represented. For the effective conservation and management of the Moroccan BP populations, it is critical to keep human infrastructures at a level that allows for maintaining the relative dominance of the agricultural landscape. Further fragmentation of this landscape will impact the ability of this farmland species to select its nesting sites flexibly.

The red-eared slider (Trachemys scripta elegans) can adapt to brackish water, which can endanger its biodiversity. Spermatogonial stem cells (SSCs) are essential for establishing and maintaining spermatogenesis and are regulated by the gut-brain-gonad axis. However, the effect of salinity on SSCs is unclear. We investigated the influence of salinity stress on the composition of the gut microbiota in T. s. elegans to determine whether it regulates SSC self-renewal and differentiation via the gut-brain-gonad axis. Three salinity groups (0‰, 5‰, and 10‰) were used in this study, and samples were obtained after 6 months of feeding. The mRNA expression of self-renewing genes (GFRα-1, RAS, and ERK) and meiotic initiation genes (RARα, NRG3, and ERBB4) in SSCs decreased with increasing salinity, indicating that salinity affects renewal and differentiation. In addition, harmful bacteria such as Enterococcus and Clostridium were increased in the S10 group, and lower levels of g_norank_f_Eubacteriaceae were negatively associated with γ-aminobutyric acid (GABA), whereas higher Turicibacter levels were positively associated with GABA levels, resulting in increased GABA content in the S5 group. The results show that salinity affects the secretion of neurotransmitters in the brain and negatively regulates the synthesis of reproductive hormones by changing the composition of intestinal microorganisms and metabolites, which affect SSC function. In conclusion, salinity influences the reproductive ability of T. s. elegans through the gut-brain-gonad axis. This study provides a new perspective for understanding the adaptation of T. s. elegans to brackish water.

Birds exhibit remarkable variations in body size, making them an ideal group for the study of adaptive evolution. However, the genetic mechanisms underlying body size evolution in avian species remain inadequately understood. This study investigates the evolutionary patterns of avian body size by analyzing 15 body-size-related genes, including GHSR, IGF2BP1, and IGFBP7 from the growth hormone/insulin-like growth factor axis, EIF2AK3, GALNS, NCAPG, PLOD1, and PLAG1 associated with tall stature, and ACAN, OBSL1, and GRB10 associated with short stature, four genes previously reported in avian species: ATP11A, PLXDC2, TNS3, and TUBGCP3. The results indicate significant adaptive evolution of body size-related genes across different avian lineages. Notably, in the IGF2BP1 gene, a significant positive correlation was observed between the evolutionary rate and body size, suggesting that larger bird species exhibit higher evolutionary rates of the IGF2BP1 gene. Furthermore, the IGFBP7 and PLXDC2 genes demonstrated accelerated evolution in large- and medium-sized birds, respectively, indicating distinct evolutionary patterns for these genes among birds of different sizes. The branch-site model analysis identified numerous positively selected sites, primarily concentrated near functional domains, thereby reinforcing the critical role of these genes in body size evolution. Interestingly, extensive convergent evolution was detected in lineages with larger body sizes. This study elucidates the genetic basis of avian body size evolution for the first time, identifying adaptive evolutionary patterns of body size-related genes across birds of varying sizes and documenting patterns of convergent evolution. These findings provide essential genetic data and novel insights into the adaptive evolution of body size in birds.

Examining closely related species evolving in similar environments offers valuable insights into the mechanisms driving phylogenetic conservatism and evolutionary lability. This can elucidate the intricate relationship between inheritance and environmental factors. Nonetheless, the precise genomic dynamics and molecular underpinnings of this process remain enigmatic. This study explores the evolutionary conservatism and adaptation exhibited by two closely related high-altitude frog species: Nanorana parkeri and N. pleskei. We assembled a high-quality genome for Tibetan N. pleskei and compared it to the genomes of N. parkeri and their lowland relatives. Our findings reveal that these two Tibetan frog species diverged approximately 16.6 million years ago, pointing to a possible ancestral colonization of high-elevation habitats. Following this colonization, significant adaptive evolution occurred in both coding and non-coding regions of the ancestral lineage. This evolution led to notable phenotypic alterations, as evidenced by the reduced body size. Also, due to purifying selection, most ancestral adaptive features persisted in descendant species, indicating a strong element of evolutionary conservatism. However, descendant species evolved novel adaptations to exacerbated environmental challenges in the Tibet Plateau, mainly related to hypoxia response. Furthermore, our analysis underscores the critical role of regulatory variations in descendant adaptive evolution. Notably, hub genes in networks, such as EGLN3, accumulated more variations in regulatory regions as they were transmitted from ancestors to descendants. In sum, our study sheds light on the profound and lasting impact of genetic heritage on species' adaptive evolution.

Male frogs emit stereotypical advertisement calls to attract mates and deter conspecific rivals. The evolution of these calls is thought to be linked to anatomical constraints and the acoustic characteristics of their surroundings. The acoustic adaptation hypothesis (AAH) posits that species evolve calls that maximize propagation distance and reduce signal degradation in the environment where they are emitted. We applied phylogenetic comparative analyses to study the association of body size, vegetation density, type of aquatic ecosystem, and calling site on the evolution of acoustic traits in Cophomantini, a large radiation of Neotropical treefrogs (Hylidae). We obtained and analyzed body size, acoustic, and habitat data from a total of 112 species (58% of Cophomantini), using the most inclusive available phylogeny. We found a significant negative correlation between peak frequency, body size, and calling site, but contrary to the predictions of the AAH, we did not find support for associations among call traits and environmental characteristics. Although spectral allometry is explained by an anatomical constraint, it could also be maintained by female choice. We recommend that future studies strive to incorporate factors such as female mate preferences, eavesdropping by predators or parasites, and genetic drift.

In mammals, temporal and spatial variation in appendage sizes within and among species may be driven by variations in ambient temperature and allometric scaling. Here, we use two decades of morphological data on three rodent species distributed across vast latitudinal gradients in China to estimate temporal and spatial trends of tail, hind-foot, and ear lengths. Further, we test 14 climate variables to identify the critical drivers of these trends and use structural equation modeling (SEM) to analyze whether the effects of climate variables on the appendage lengths are direct or indirect, via effects on body length. Relative to body length, and in contradiction to Allen's rule, all appendage lengths remained unchanged over time and across space. By contrast, absolute appendage lengths increased in one species (Apodemus agrarius) over time and in two species (A. agrarius and Rattus norvegicus) across space; and most of the appendage lengths in the two species were associated with annual mean minimum temperature in the year preceding capture (PreAnnMinTemp). The SEM results suggest that PreAnnMinTemp affected absolute appendage lengths indirectly through body length. In addition, except for tail length in two species and both hind-foot and ear length in one species, absolute appendage lengths scaled allometrically with body length. These results suggest that the distinct temperature-appendage-length patterns among and within species arise from species-specific temperature sensitivities and appendage-specific ontogenetic rates and functions.

Desmans belong to the subfamily Desmaninae, which are members of the family Talpidae. Desmans and moles show limited sexual dimorphism, making unclear sex discrimination by phenotypic assessment. The Iberian desman (Galemys pyrenaicus) is an endangered species with a severe population decline. Knowledge of sex and sex ratio is essential for conservation and management. Based on these arguments and although previous conventional PCR studies amplifying DBX/DBY genes were relatively successful in sexing the desman, high-resolution sex-specific PCR has been requested. All these reasons encouraged us to develop new species-specific RT-qPCR assays by TaqMan probes to determine the sex in desman, especially with genetic material from non-invasive samples. Accordingly, efficiency, limit of detection (LOD), specificity, and DNA analysis from faeces were verified. The target genes DBX and DBY were amplified with gDNA from both sexes, with Y-chromosome consistently absent in the female. Despite the modest efficiency, regression analysis (R² > 0.999) indicated a linear range of the DBX and DBY assays extending from 20 to 0.2 ng/µL DNA. LOD analyses estimated that twice as much gDNA was needed in males as in females for DBX detection. Paradoxically, the Y-chromosome required three times as much gDNA as the X-chromosome using a male sample. Therefore, an unexpected dosage imbalance in the genome in favour of the X chromosome was discussed in light of an apparent multicopy nature of the DBX gene and with a sexing success rate of 49.9% of the non-invasive samples, supporting Fisher's principle for the mammalian XX/XY sex system, as expected.

Many animal species show considerable intraspecific phenotypic variation. For species with broad distributions, this variation may result from heterogeneity in the strength and agents of selection across environments and could contribute to reproductive isolation among populations. Here, we examined interpopulation variation in a morphological trait related to chemical communication, femoral pore number (FP), using 3437 individuals from 55 Pyrenean populations of the common wall lizard (Podarcis muralis). Specifically, we tested the relative roles of genetic relatedness and gene flow, and adaptation to local conditions in generating this variation, with particular interest in the influence of climate and the socio-sexual environment (i.e., the intensity of sexual selection, estimated using sexual size dimorphism [SSD] and adult sex ratio as proxy measures). We found significant interpopulation variation and sexual dimorphism in FP, as well as high genomic differentiation among populations driven by both geographic and environmental distances. Specifically, FP differences across populations were best predicted by a combination of positive allometry and the local intensity of sexual selection, as determined by SSD, or local climatic conditions. Higher FP in more male-competitive environments, or with higher temperature and vegetation complexity, is consistent with adaptation to maintaining signaling efficacy of territorial scent marks. These results suggest that adaptation to local conditions contributes to interpopulation divergence in FP and thus environmental changes can potentially impact the fine-tuning of chemical communication mediating social and sexual behavior.

Factors such as elevation, season, and micro-environment may introduce bias and should be evaluated to minimize potential errors. Our findings revealed the significant impacts of altitude and season on the number of cameras and monitoring duration required in camera trap surveys. The optimal strategy for monitoring mammals is to increase the number of cameras and decrease the sampling period at lower elevations, to add more cameras and extend the sampling time during the dry season due to seasonal differences in capture ratio and species richness. Additionally, camera trap sites should be selected based on factors such as human disturbance, available resources, and concealment.