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Genomic epidemiology of healthcare-associated respiratory virus infections in Pittsburgh, Pennsylvania, 2018-2020. 2018-2020年宾夕法尼亚州匹兹堡市医疗保健相关呼吸道病毒感染的基因组流行病学分析
IF 2.9 4区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-11-04 DOI: 10.1017/ice.2025.10328
Vatsala Rangachar Srinivasa, Marissa P Griffith, Alexander J Sundermann, Emma Mills, Nathan J Raabe, Kady D Waggle, Kathleen A Shutt, Tung Phan, Anna F Wang-Erickson, Graham M Snyder, Daria Van Tyne, Lora Lee Pless, Lee H Harrison

Background: Respiratory virus transmission in healthcare settings is not well understood. To investigate the transmission dynamics of common healthcare-associated respiratory virus infections, we performed retrospective whole genome sequencing (WGS) surveillance at three teaching hospitals.

Methods: From January 2, 2018, to January 4, 2020, nasal swab specimens positive for rhinovirus, influenza virus, human metapneumovirus (HMPV), or respiratory syncytial virus (RSV) from patients hospitalized for ≥3 days were sequenced. High-quality genomes were assessed for genetic relatedness using ≤3 single nucleotide polymorphisms (SNPs) as a cutoff, except for rhinovirus (≤10 SNPs). Patient health records were reviewed for genetically related clusters to identify epidemiological connections.

Results: We collected 436 viral specimens from 359 patients: rhinovirus (n = 291), influenza virus (n = 50), RSV (n = 48), and HMPV (n = 47). Of these, 42%% (152/359 patients) were from a pediatric hospital, and 58% were from adult hospitals. WGS was performed on 61.2% (178/291) rhinovirus, 78% (39/50) influenza virus, 90% (43/48) RSV, and all HMPV specimens. Among high-quality genomes, we identified 14 genetically related clusters involving 36 patients (range: 2-5 patients per cluster). We identified common epidemiological links for 53% (19/36) of clustered patients; 63% (12/19) of patients had same-unit stays, 26% (5/19) had overlapping hospital stays, and 11% (2/19) shared common providers. On average, genetically related clusters spanned 16 days (range: 0 - 55 days).

Conclusion: WGS offered new insights into respiratory virus transmission dynamics. These advancements could potentially improve infection prevention and control strategies, leading to enhanced patient safety and healthcare outcomes.

背景:呼吸道病毒在卫生保健机构的传播尚不清楚。为了调查常见的卫生保健相关呼吸道病毒感染的传播动态,我们在三所教学医院进行了回顾性全基因组测序(WGS)监测。方法:对2018年1月2日至2020年1月4日住院≥3天的鼻病毒、流感病毒、人中肺病毒(HMPV)或呼吸道合胞病毒(RSV)阳性患者的鼻拭子标本进行测序。除鼻病毒(≤10个snp)外,使用≤3个单核苷酸多态性(snp)作为截断点评估高质量基因组的遗传相关性。审查了患者健康记录,以确定遗传相关群集,以确定流行病学联系。结果:从359例患者中采集到436份病毒标本:鼻病毒(n = 291)、流感病毒(n = 50)、RSV (n = 48)、HMPV (n = 47)。其中,42%(152/359例)来自儿科医院,58%来自成人医院。对61.2%(178/291)鼻病毒、78%(39/50)流感病毒、90% (43/48)RSV和所有HMPV标本进行WGS检测。在高质量基因组中,我们确定了涉及36例患者的14个遗传相关集群(范围:每个集群2-5例患者)。我们在53%(19/36)的聚集性患者中发现了共同的流行病学联系;63%(12/19)的患者住院时间相同,26%(5/19)的患者住院时间重叠,11%(2/19)的患者住院时间相同。平均而言,遗传相关的群集持续16天(范围:0 - 55天)。结论:WGS为呼吸道病毒传播动力学研究提供了新的思路。这些进步可能会改善感染预防和控制策略,从而提高患者安全和医疗保健结果。
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引用次数: 0
Patient harm events: hospital-onset bacteremia vs CMS-reportable events. 患者伤害事件:医院发病菌血症vs cms报告事件
IF 2.9 4区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-11-03 DOI: 10.1017/ice.2025.10327
Heather L Young, Carolyn Valdez, Brian Listy, Timothy C Jenkins

National Healthcare Safety Network developed a hospital-onset bacteremia (HOB) reporting module which may be used for Centers for Medicare and Medicaid Services (CMS)-reimbursement in the future. This retrospective study compared CMS-reported, HOB, and Overlap events. There were twice as many HOB as CMS events, but >40% of HOB were due to infections that lack defined infection prevention practices.

国家医疗安全网络开发了一个医院发病菌血症(HOB)报告模块,可用于医疗保险和医疗补助服务中心(CMS)未来的报销。本回顾性研究比较了cms报告、HOB和重叠事件。HOB是CMS事件的两倍,但约40%的HOB是由于感染缺乏明确的感染预防措施。
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引用次数: 0
Prevention of intravascular catheter-related infections-25 years later. 预防血管内导管相关感染——25年后。
IF 2.9 4区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-11-03 DOI: 10.1017/ice.2025.10300
Leonard A Mermel, Niccolò Buetti
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引用次数: 0
Preparedness for Candida auris in Canadian Nosocomial Infection Surveillance Program (CNISP) hospitals, 2024. 加拿大医院感染监测计划(CNISP)医院的耳念珠菌准备,2024。
IF 2.9 4区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-10-30 DOI: 10.1017/ice.2025.10228
Charlie Tan, Amrita Bharat, Erin McGill, Robyn Mitchell, Olivia Varsaneux, Kristine Cannon, Marthe K Charles, Jeannette L Comeau, Ian Davis, Johan Delport, Tanis C Dingle, Philippe J Dufresne, Chelsey Ellis, Jennifer Ellison, Amna Faheem, Charles Frenette, Linda Hoang, Susy Hota, Kevin Katz, Pamela Kibsey, Julianne Kus, Bonita Lee, Xena Li, Yves Longtin, Kathy Malejczyk, Shazia Masud, Dominik Mertz, Sonja Musto, Kishori Naik, Senthuri Paramalingam, Susan M Poutanen, Dale Purych, Stephanie W Smith, Jocelyn A Srigley, Reena Titoria, Jen Tomlinson, Xuetao Wang, Titus Wong, Deborah Yamamura, Allison McGeer

Objective: To assess preparedness for Candida auris in Canadian hospitals.

Design: Cross-sectional survey.

Setting: Canadian Nosocomial Infection Surveillance Program (CNISP) hospitals.

Methods: In June 2024, surveys were e-mailed to the infection prevention and control departments of 109 CNISP hospitals and their 33 microbiology laboratories. The surveys assessed policies for patient screening/management and laboratory processes supporting C. auris transmission prevention. Results were compared to a similar 2018 survey.

Results: All 109 hospitals and 32/33 laboratories responded. Most hospitals had policies for admission screening (80%, 87/109) and policies/defined plans for post-exposure screening (95%, 104/109). Policy presence increased from 18% to 73% in 56 hospitals completing both 2018 and 2024 surveys (P < 0.001). Among hospitals with admission screening policies, 69% (60/87) screened for recent out-of-country hospitalization. All but one hospital implemented transmission-based precautions for cases; 70% (76/109) continued precautions indefinitely. Overall, 94% (99/105; excluding hospitals with exclusively private rooms) and 55% (60/109) of hospitals screened roommates and wardmates, respectively. Frequency and timing of screening and policies regarding precautions for exposed patients varied. All hospitals used axilla and groin swabs, at minimum, for screening. Most (81%, 26/32) laboratories identified all clinically significant Candida isolates to species level, increasing from 48% to 85% (P < 0.001) in the 27 laboratories completing both 2018 and 2024 surveys. Twenty-four laboratories (75%) had standard operating procedures for processing screening specimens; 96% (23/24) used direct plating onto chromogenic agar.

Conclusions: Despite progress in C. auris preparedness, areas for improvement remain. Variability in practice may be related to evidence gaps and resource constraints.

目的:评估加拿大医院对耳念珠菌的准备情况。设计:横断面调查。环境:加拿大医院感染监测项目(CNISP)医院。方法:于2024年6月,通过电子邮件对109所中医院感染防控部门及所属33个微生物实验室进行调查。调查评估了患者筛查/管理政策和支持耳球菌传播预防的实验室流程。结果与2018年的一项类似调查进行了比较。结果:109家医院和32/33家实验室均有响应。大多数医院有入院筛查政策(80%,87/109)和暴露后筛查政策/确定计划(95%,104/109)。在完成2018年和2024年调查的56家医院中,政策参与率从18%增加到73% (P < 0.001)。在有住院筛查政策的医院中,69%(60/87)对最近的境外住院进行了筛查。除一家医院外,所有医院都对病例采取了基于传播的预防措施;70%(76/109)无限期地继续采取预防措施。总体而言,94%(99/105;不包括完全私人病房的医院)和55%(60/109)的医院分别筛选室友和病房伙伴。筛查的频率和时间以及针对暴露患者的预防政策各不相同。所有医院都至少使用腋窝和腹股沟拭子进行筛查。大多数实验室(81%,26/32)鉴定出所有具有临床意义的念珠菌分离株至物种水平,在完成2018年和2024年调查的27个实验室中,从48%增加到85% (P < 0.001)。24个实验室(75%)具有处理筛选标本的标准操作程序;96%(23/24)直接镀在显色琼脂上。结论:尽管在金黄色葡萄球菌的防范方面取得了进展,但仍有需要改进的地方。实践中的可变性可能与证据差距和资源限制有关。
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引用次数: 0
Impact of a molecular syndromic panel on Clostridioides difficile detection and clinical interpretation. 分子综合征小组对艰难梭菌检测和临床解释的影响。
IF 2.9 4区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-10-29 DOI: 10.1017/ice.2025.10313
Nancy Matic, Shayan Shakeraneh, Jennifer Bilawka, Leah Gowland, Willson Jang, Colin Lee, Victor Leung, Michael Payne, Aleksandra Stefanovic, Christopher F Lowe, Marc G Romney

After implementation of a molecular syndromic panel for infectious diarrhea, a significantly greater proportion of C. difficile results were classified as colonization rather than infection compared to the pre-implementation period. Routine C. difficile reporting from multiplex panels should be re-evaluated to minimize diagnostic uncertainty in some patients.

在实施感染性腹泻分子综合征小组后,与实施前相比,艰难梭菌结果被归类为定植而不是感染的比例显著增加。应重新评估多重检查组的常规艰难梭菌报告,以尽量减少某些患者的诊断不确定性。
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引用次数: 0
Legionella on tap: nosocomial pneumonia cluster linked to a hospital cold water dispenser in hematology patients. 军团菌水龙头:血液学患者与医院冷水机相关的医院性肺炎群集。
IF 2.9 4区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-10-28 DOI: 10.1017/ice.2025.10333
Oren Biham, Hovav Azulay, Ronit Nativ, Vered Ischa Abar, Abraham Borer, Lior Nesher, Galia Karp

We describe an outbreak of hospital-acquired Legionella pneumonia in a hematology ward; a cold drinking water dispenser was identified as the source. Regular surveillance and provision of appropriate water quality to high-risk patients are critical, and hospitals should be aware of the risks associated with the use of these devices.

我们描述了在血液科病房爆发医院获得性军团菌肺炎;一个冷饮饮水机被确定为源头。定期监测并向高风险患者提供适当水质至关重要,医院应意识到与使用这些设备相关的风险。
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引用次数: 0
Validation of an electronic algorithm to identify appropriate antibiotic use for community-acquired pneumonia in hospitalized children. 确认住院儿童社区获得性肺炎适当抗生素使用的电子算法的验证。
IF 2.9 4区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-10-28 DOI: 10.1017/ice.2025.10314
Kathleen Chiotos, Lauren Dutcher, Robert Grundmeier, Didien Meyahnwi, Ebbing Lautenbach, Melinda Neuhauser, Lauri Hicks, Keith Hamilton, Julia E Szymczak, Brandi Muller, Leigh Cressman, Anne Jaskowiak-Barr, Jeffrey Gerber

Background: Algorithms using electronic health record data to identify children with community-acquired pneumonia (CAP) and to evaluate the appropriateness of antibiotic use may facilitate antibiotic stewardship efforts, but validated measures of antibiotic choice and duration are unavailable.

Methods: We performed a cross-sectional study within a single hospital system, including hospitalized children ages 6 months to 17 years who were admitted between 1/1/2019 and 10/31/2022. CAP was defined electronically as an ICD-10 code for pneumonia, a chest x-ray or chest CT within 48 hours of admission, and at least two days of antibiotics starting within 48 hours of admission. Hospital transfers and those who died within 48 hours or had chronic conditions, intensive care unit stays ≥48 hours, or concurrent infections were excluded. We validated electronic measures of appropriate antibiotic choice and duration using a reference standard of manual chart review. Sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) were calculated for each metric.

Results: The electronic algorithm identified 1058 CAP encounters, and 100 were randomly selected for validation. Inappropriate antibiotic choice and duration occurred in one and 75 encounters of the 100 encounters, respectively, based on manual chart review. The electronic algorithm had a sensitivity of 100%, specificity of 93%, PPV of 14%, and NPV of 100% for inappropriate antibiotic choice and a sensitivity of 97%, specificity of 88%, PPV of 96%, and NPV of 92% for inappropriate antibiotic duration.

Conclusion: Metrics of inappropriate antibiotic choice and duration had acceptable performance characteristics and may facilitate syndrome-based stewardship efforts.

背景:使用电子健康记录数据识别社区获得性肺炎(CAP)儿童和评估抗生素使用的适宜性的算法可能有助于抗生素管理工作,但没有抗生素选择和持续时间的有效措施。方法:我们在单一医院系统中进行了一项横断面研究,包括在2019年1月1日至2022年10月31日期间入院的6个月至17岁的住院儿童。CAP的电子定义为肺炎的ICD-10代码,入院48小时内的胸部x光片或胸部CT,以及入院48小时内开始的至少两天抗生素。医院转院和48小时内死亡或患有慢性疾病、重症监护病房住院≥48小时或并发感染的患者被排除在外。我们使用人工图表审查的参考标准验证了适当抗生素选择和持续时间的电子测量。计算每个指标的敏感性、特异性、阳性预测值(PPV)和阴性预测值(NPV)。结果:电子算法识别出1058个CAP相遇,随机抽取100个进行验证。根据人工图表审查,在100次就诊中,分别有1次和75次就诊发生了不适当的抗生素选择和持续时间。电子算法对抗生素选择不当的敏感性为100%,特异性为93%,PPV为14%,NPV为100%;对抗生素使用时间不当的敏感性为97%,特异性为88%,PPV为96%,NPV为92%。结论:不适当抗生素选择和持续时间的指标具有可接受的性能特征,并可能促进基于综合征的管理工作。
{"title":"Validation of an electronic algorithm to identify appropriate antibiotic use for community-acquired pneumonia in hospitalized children.","authors":"Kathleen Chiotos, Lauren Dutcher, Robert Grundmeier, Didien Meyahnwi, Ebbing Lautenbach, Melinda Neuhauser, Lauri Hicks, Keith Hamilton, Julia E Szymczak, Brandi Muller, Leigh Cressman, Anne Jaskowiak-Barr, Jeffrey Gerber","doi":"10.1017/ice.2025.10314","DOIUrl":"https://doi.org/10.1017/ice.2025.10314","url":null,"abstract":"<p><strong>Background: </strong>Algorithms using electronic health record data to identify children with community-acquired pneumonia (CAP) and to evaluate the appropriateness of antibiotic use may facilitate antibiotic stewardship efforts, but validated measures of antibiotic choice and duration are unavailable.</p><p><strong>Methods: </strong>We performed a cross-sectional study within a single hospital system, including hospitalized children ages 6 months to 17 years who were admitted between 1/1/2019 and 10/31/2022. CAP was defined electronically as an ICD-10 code for pneumonia, a chest x-ray or chest CT within 48 hours of admission, and at least two days of antibiotics starting within 48 hours of admission. Hospital transfers and those who died within 48 hours or had chronic conditions, intensive care unit stays ≥48 hours, or concurrent infections were excluded. We validated electronic measures of appropriate antibiotic choice and duration using a reference standard of manual chart review. Sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) were calculated for each metric.</p><p><strong>Results: </strong>The electronic algorithm identified 1058 CAP encounters, and 100 were randomly selected for validation. Inappropriate antibiotic choice and duration occurred in one and 75 encounters of the 100 encounters, respectively, based on manual chart review. The electronic algorithm had a sensitivity of 100%, specificity of 93%, PPV of 14%, and NPV of 100% for inappropriate antibiotic choice and a sensitivity of 97%, specificity of 88%, PPV of 96%, and NPV of 92% for inappropriate antibiotic duration.</p><p><strong>Conclusion: </strong>Metrics of inappropriate antibiotic choice and duration had acceptable performance characteristics and may facilitate syndrome-based stewardship efforts.</p>","PeriodicalId":13663,"journal":{"name":"Infection Control and Hospital Epidemiology","volume":" ","pages":"1-7"},"PeriodicalIF":2.9,"publicationDate":"2025-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145376754","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multisociety guidance for infection prevention and control in nursing homes. 养老院感染防控的多社会指导。
IF 2.9 4区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-10-28 DOI: 10.1017/ice.2025.10252
Lona Mody, Sonali D Advani, Muhammad Salman Ashraf, Allison H Bartlett, Suzanne F Bradley, Deborah P Burdsall, Jennifer A Hanrahan, Susan S Huang, Robin L P Jump, Lindsay Nicolle, Mary-Claire Roghmann, Patricia Stone, Rekha K Murthy

This multisociety guidance was endorsed by SHEA, APIC, IDSA, PALTmed, and AGS. It provides recommendations for infection prevention and control (IPC) in the context of the increasing complexity of nursing home care in the United States: increased medical acuity of residents, the spread of multidrug-resistant organisms, and the threat of emerging pathogens. Recommendations and implementation suggestions address IPC leadership, staffing, and resources, healthcare personnel and residents' adherence to precautions and effective hand hygiene, outbreak preparedness, training, occupational health, cleaning and disinfection in the care environment, and the involvement of IPC in the facility. The guidance also addresses the challenges of maintaining a home-like care space while sustaining necessary IPC measures. The guidance covers the role of regulatory bodies like the Centers for Medicare and Medicaid Services (CMS) and recommendations from the Centers for Disease Control and Prevention (CDC). It should serve as a resource for IPC program leaders in nursing homes who are aiming to enhance infection prevention efforts.

这一多社会指南得到了SHEA、APIC、IDSA、PALTmed和AGS的认可。在美国养老院护理日益复杂的背景下,它为感染预防和控制(IPC)提供了建议:居民的医疗敏锐度提高,耐多药生物的传播以及新出现的病原体的威胁。建议和实施建议涉及感染预防和控制的领导、人员配备和资源、卫生保健人员和居民遵守预防措施和有效的手部卫生、疫情准备、培训、职业卫生、护理环境中的清洁和消毒以及感染预防和控制在设施中的参与。该指南还解决了在维持必要的IPC措施的同时维持类似家庭的护理空间的挑战。该指南涵盖了医疗保险和医疗补助服务中心(CMS)等监管机构的作用,以及疾病控制和预防中心(CDC)的建议。它应该作为旨在加强感染预防工作的疗养院IPC项目负责人的资源。
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引用次数: 0
Results of a local modified Delphi consensus on use of plasma metagenomic next-generation sequencing. 血浆宏基因组新一代测序的局部修正Delphi共识结果。
IF 2.9 4区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-10-28 DOI: 10.1017/ice.2025.10334
Caitlin Naureckas Li, Ravi Jhaveri, Sara Huston

Molecular tests without well-defined test performance characteristics are increasingly available for diagnosis of infectious diseases. These tests present a diagnostic stewardship challenge for institutions. We share the results of a local modified Delphi consensus undertaken to define appropriate scenarios for use of plasma metagenomic next-generation sequencing.

没有明确的测试性能特征的分子测试越来越多地用于传染病的诊断。这些测试对机构的诊断管理提出了挑战。我们分享了当地修改的德尔菲共识的结果,该共识旨在确定使用等离子宏基因组新一代测序的适当方案。
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引用次数: 0
Implementation of a pilot program of interprofessional education in infection prevention. 实施预防感染的跨专业教育试点方案。
IF 2.9 4区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-10-27 DOI: 10.1017/ice.2025.10331
Sabra Custer, Jasper Lim, Majdi Al-Hasan, Caroline Derrick, Sangita Dash, Shanetta Williams, Pamela Bailey
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引用次数: 0
期刊
Infection Control and Hospital Epidemiology
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