Pub Date : 2024-10-21eCollection Date: 2024-01-01DOI: 10.1093/iob/obae038
T Reinecke, K D Angielczyk
Trabecular bone, and its ability to rapidly modify its structure in response to strain exerted on skeletal elements, has garnered increased attention from researchers with the advancement of CT technology that allows for the analysis of its complex lattice-like framework. Much of this research has focused on adults of select taxa, but analysis into trabecular development across ontogeny remains limited. In this paper, we explore the shift in several trabecular characteristics in the articular head of the humerus and femur in Procyon lotor across the entirely of the species' lifespan. Our results show that while body mass plays a role in determining trabecular structure, other elements such as bone growth, increased activity, and puberty result in trends not observed in the interspecific analysis of adults. Furthermore, differences in the trabeculae of the humerus and femur suggest combining distinct boney elements in meta-analysis may obfuscate the variety in the structures. Finally, rates at which fore and hindlimb trabeculae orient themselves early in life differ enough to warrant further exploration to identify the currently unknown causes for their variation.
{"title":"Raccoons Reveal Hidden Diversity in Trabecular Bone Development.","authors":"T Reinecke, K D Angielczyk","doi":"10.1093/iob/obae038","DOIUrl":"https://doi.org/10.1093/iob/obae038","url":null,"abstract":"<p><p>Trabecular bone, and its ability to rapidly modify its structure in response to strain exerted on skeletal elements, has garnered increased attention from researchers with the advancement of CT technology that allows for the analysis of its complex lattice-like framework. Much of this research has focused on adults of select taxa, but analysis into trabecular development across ontogeny remains limited. In this paper, we explore the shift in several trabecular characteristics in the articular head of the humerus and femur in <i>Procyon lotor</i> across the entirely of the species' lifespan. Our results show that while body mass plays a role in determining trabecular structure, other elements such as bone growth, increased activity, and puberty result in trends not observed in the interspecific analysis of adults. Furthermore, differences in the trabeculae of the humerus and femur suggest combining distinct boney elements in meta-analysis may obfuscate the variety in the structures. Finally, rates at which fore and hindlimb trabeculae orient themselves early in life differ enough to warrant further exploration to identify the currently unknown causes for their variation.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11495488/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142499765","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-26eCollection Date: 2024-01-01DOI: 10.1093/iob/obae037
C Frazão Santos, T Agardy, L B Crowder, J C Day, A Himes-Cornell, M L Pinsky, J M Reimer, E Gissi
Over recent years, recognition of the need to develop climate-smart marine spatial planning (MSP) has gained momentum globally. In this roundtable discussion, we use a question-and-answer format to leverage diverse perspectives and voices involved in the study of sustainable MSP and marine conservation under global environmental and social change. We intend this dialogue to serve as a stepping stone toward developing ocean planning initiatives that are sustainable, equitable, and climate-resilient around the globe.
{"title":"Ocean Planning and Conservation in the Age of Climate Change: A Roundtable Discussion.","authors":"C Frazão Santos, T Agardy, L B Crowder, J C Day, A Himes-Cornell, M L Pinsky, J M Reimer, E Gissi","doi":"10.1093/iob/obae037","DOIUrl":"https://doi.org/10.1093/iob/obae037","url":null,"abstract":"<p><p>Over recent years, recognition of the need to develop climate-smart marine spatial planning (MSP) has gained momentum globally. In this roundtable discussion, we use a question-and-answer format to leverage diverse perspectives and voices involved in the study of sustainable MSP and marine conservation under global environmental and social change. We intend this dialogue to serve as a stepping stone toward developing ocean planning initiatives that are sustainable, equitable, and climate-resilient around the globe.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11495413/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142499764","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-13eCollection Date: 2024-01-01DOI: 10.1093/iob/obae034
M A Wright, T J Cavanaugh, S E Pierce
Size has an impact on various aspects of an animal's biology, including physiology, biomechanics, and ecology. Accurately and precisely estimating size, in particular body mass, is therefore a core objective of paleobiologists. Two approaches for estimating body mass are common: whole-body volumetric models and individual element-scaling (e.g., bones, teeth). The latter has been argued to be more accurate, while the former more precise. Here, we use minimum convex hulls (MCHs) to generate a predictive volumetric model for estimating body mass across a broad taxonomic and size range (127 g - 2735 kg). We compare our MCH model to stylopodial-scaling, incorporating data from the literature, and find that MCH body mass estimation is both more accurate and more precise than stylopodial estimation. An explanation for the difference between methods is that reptile and mammal stylopod circumference and length dimensions scale differentially (slope 1.179 ± 0.102 vs. 1.038 ± 0.031, respectively), such that reptiles have more robust bones for a given size. Consequently, a mammalian-weighted stylopodial-scaling sample overestimates the body mass of larger reptiles, and this error increases with size. We apply both estimation equations to a sample of 12 Permo-Triassic tetrapods and find that stylopodial-scaling consistently estimates a higher body mass than MCH estimation, due to even more robust bones in extinct species (slope = 1.319 ± 0.213). Finally, we take advantage of our MCH models to explore constraints regarding the position of the center of mass (CoM) and find that relative body proportions (i.e., skull:tail ratio) influence CoM position differently in mammals, crocodylians, and Permo-Triassic tetrapods. Further, we find that clade-specific body segment expansion factors do not affect group comparisons but may be important for individual specimens with rather disproportionate bodies (e.g., the small-headed and large-tailed Edaphosaurus). Our findings suggest that the whole-body volumetric approach is better suited for estimating body mass than element-scaling when anatomies are beyond the scope of the sample used to generate the scaling equations and provides added benefits such as the ability to measure inertial properties.
{"title":"Volumetric versus Element-scaling Mass Estimation and Its Application to Permo-Triassic Tetrapods.","authors":"M A Wright, T J Cavanaugh, S E Pierce","doi":"10.1093/iob/obae034","DOIUrl":"https://doi.org/10.1093/iob/obae034","url":null,"abstract":"<p><p>Size has an impact on various aspects of an animal's biology, including physiology, biomechanics, and ecology. Accurately and precisely estimating size, in particular body mass, is therefore a core objective of paleobiologists. Two approaches for estimating body mass are common: whole-body volumetric models and individual element-scaling (e.g., bones, teeth). The latter has been argued to be more accurate, while the former more precise. Here, we use minimum convex hulls (MCHs) to generate a predictive volumetric model for estimating body mass across a broad taxonomic and size range (127 g - 2735 kg). We compare our MCH model to stylopodial-scaling, incorporating data from the literature, and find that MCH body mass estimation is both more accurate and more precise than stylopodial estimation. An explanation for the difference between methods is that reptile and mammal stylopod circumference and length dimensions scale differentially (slope 1.179 ± 0.102 vs. 1.038 ± 0.031, respectively), such that reptiles have more robust bones for a given size. Consequently, a mammalian-weighted stylopodial-scaling sample overestimates the body mass of larger reptiles, and this error increases with size. We apply both estimation equations to a sample of 12 Permo-Triassic tetrapods and find that stylopodial-scaling consistently estimates a higher body mass than MCH estimation, due to even more robust bones in extinct species (slope = 1.319 ± 0.213). Finally, we take advantage of our MCH models to explore constraints regarding the position of the center of mass (CoM) and find that relative body proportions (i.e., skull:tail ratio) influence CoM position differently in mammals, crocodylians, and Permo-Triassic tetrapods. Further, we find that clade-specific body segment expansion factors do not affect group comparisons but may be important for individual specimens with rather disproportionate bodies (e.g., the small-headed and large-tailed <i>Edaphosaurus</i>). Our findings suggest that the whole-body volumetric approach is better suited for estimating body mass than element-scaling when anatomies are beyond the scope of the sample used to generate the scaling equations and provides added benefits such as the ability to measure inertial properties.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11438236/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142346016","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-10eCollection Date: 2024-01-01DOI: 10.1093/iob/obae035
K G Ross, S Alvarez Zepeda, M A Auwal, A K Garces, S Roman, R M Zayas
Planarians are an excellent model for investigating molecular mechanisms necessary for regenerating a functional nervous system. Numerous studies have led to the generation of extensive genomic resources, especially whole-animal single-cell RNA-seq resources. These have facilitated in silico predictions of neuronal subtypes, many of which have been anatomically mapped by in situ hybridization. However, our knowledge of the function of dozens of neuronal subtypes remains poorly understood. Previous investigations identified that polycystic kidney disease (pkd)-like genes in planarians are strongly expressed in sensory neurons and have roles in mechanosensation. Here, we examine the expression and function of all the pkd genes found in the Schmidtea mediterranea genome and map their expression in the asexual and hermaphroditic strains. Using custom behavioral assays, we test the function of pkd genes in response to mechanical stimulation and in food detection. Our work provides insight into the physiological function of sensory neuron populations and protocols for creating inexpensive automated setups for acquiring and analyzing mechanosensory stimulation in planarians.
{"title":"The Role of <i>Polycystic Kidney Disease-Like</i> Homologs in Planarian Nervous System Regeneration and Function.","authors":"K G Ross, S Alvarez Zepeda, M A Auwal, A K Garces, S Roman, R M Zayas","doi":"10.1093/iob/obae035","DOIUrl":"10.1093/iob/obae035","url":null,"abstract":"<p><p>Planarians are an excellent model for investigating molecular mechanisms necessary for regenerating a functional nervous system. Numerous studies have led to the generation of extensive genomic resources, especially whole-animal single-cell RNA-seq resources. These have facilitated <i>in silico</i> predictions of neuronal subtypes, many of which have been anatomically mapped by <i>in situ</i> hybridization. However, our knowledge of the function of dozens of neuronal subtypes remains poorly understood. Previous investigations identified that <i>polycystic kidney disease (pkd)-like</i> genes in planarians are strongly expressed in sensory neurons and have roles in mechanosensation. Here, we examine the expression and function of all the <i>pkd</i> genes found in the <i>Schmidtea mediterranea</i> genome and map their expression in the asexual and hermaphroditic strains. Using custom behavioral assays, we test the function of <i>pkd</i> genes in response to mechanical stimulation and in food detection. Our work provides insight into the physiological function of sensory neuron populations and protocols for creating inexpensive automated setups for acquiring and analyzing mechanosensory stimulation in planarians.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11448475/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142371759","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-02eCollection Date: 2024-01-01DOI: 10.1093/iob/obae033
M J Wagner, P A Moore
Many prey organisms respond to the nonconsumptive effects of predators by altering their physiology, morphology, and behavior. These inducible defenses can create refuges for prey by decreasing the likelihood of consumption by predators. Some prey, as in marine mollusks, have been shown to alter their morphology in response to the presence of size-limited predation. To extend this work, we exposed pointed campeloma snails (Campeloma decisum) to chemical cues from a natural predator, the rusty crayfish (Faxonius rusticus), to better understand how snail morphology changes under the threat of predation. The total force needed to crush shells, total shell length, aperture width, and total weight, along with changes to these 3 body measurements, were recorded for each individual and used to quantify morphological changes as a function of risk. Snails exposed to crayfish chemical cues had shells that required significantly more force to crush their shells than controls (P = 0.023). Total shell length was greater in crayfish-exposed snails than in control snails (P = 0.012), and snails in the crayfish treatment also showed significantly more change in shell length than control snails (P = 0.007). Similarly, aperture width was significantly greater in exposed snails (P = 0.011). However, exposed snails exhibited significantly less change in aperture width than controls (P = 0.03). Finally, we found that snails exposed to crayfish weighed significantly more than snails in the control (P = 0.008). Thus, the results of this study show that morphology of gastropods is altered in the presence of predators, and this may be an antipredator tactic directly related to predation risk.
{"title":"Risky Business: Predator Chemical Cues Mediate Morphological Changes in Freshwater Snails.","authors":"M J Wagner, P A Moore","doi":"10.1093/iob/obae033","DOIUrl":"https://doi.org/10.1093/iob/obae033","url":null,"abstract":"<p><p>Many prey organisms respond to the nonconsumptive effects of predators by altering their physiology, morphology, and behavior. These inducible defenses can create refuges for prey by decreasing the likelihood of consumption by predators. Some prey, as in marine mollusks, have been shown to alter their morphology in response to the presence of size-limited predation. To extend this work, we exposed pointed campeloma snails (<i>Campeloma decisum</i>) to chemical cues from a natural predator, the rusty crayfish (<i>Faxonius rusticus</i>), to better understand how snail morphology changes under the threat of predation. The total force needed to crush shells, total shell length, aperture width, and total weight, along with changes to these 3 body measurements, were recorded for each individual and used to quantify morphological changes as a function of risk. Snails exposed to crayfish chemical cues had shells that required significantly more force to crush their shells than controls (<i>P</i> = 0.023). Total shell length was greater in crayfish-exposed snails than in control snails (<i>P</i> = 0.012), and snails in the crayfish treatment also showed significantly more change in shell length than control snails (<i>P</i> = 0.007). Similarly, aperture width was significantly greater in exposed snails (<i>P</i> = 0.011). However, exposed snails exhibited significantly less change in aperture width than controls (<i>P</i> = 0.03). Finally, we found that snails exposed to crayfish weighed significantly more than snails in the control (<i>P</i> = 0.008). Thus, the results of this study show that morphology of gastropods is altered in the presence of predators, and this may be an antipredator tactic directly related to predation risk.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11404504/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142286287","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-29eCollection Date: 2024-01-01DOI: 10.1093/iob/obae029
A A Smith, J S Harrison
Springtails are among the most abundant arthropods on earth and they exhibit unique latch-mediated spring-actuated jumping behaviors and anatomical systems. Despite this, springtail jumps have not been well described, especially for those with a globular body plan. Here, we provide a complete description and visualization of jumping in the globular springtail Dicyrtomina minuta. A furca-powered jump results in an average take-off velocity of 1 ms-1 in 1.7 ms, with a fastest acceleration to liftoff of 1938 ms-2. All jumps involve rapid backwards body rotation throughout, rotating on average at 282.2 Hz with a peak rate of 368.7 Hz. Despite body lengths of 1-2 mm, jumping resulted in a backwards trajectory traveling up to 102 mm in horizontal distance and 62 mm in vertical. Escape jumps in response to posterior stimulation did not elicit forward-facing jumps, suggesting that D. minuta is incapable of directing a jump off a flat surface within the 90° heading directly in front of them. Finally, two landing strategies were observed: collophore-anchoring, which allows for an immediate arrest and recovery, and uncontrolled landings where the springtail chaotically tumbles. In comparison to other fast jumping arthropods, linear performance measures globular springtail jumps place them between other systems like fleas and froghoppers. However, in angular body rotation, globular springtails like D. minuta surpass all other animal systems. Given the extraordinary performance measures, unique behavioral responses, and understudied nature of these species, globular springtails present promising opportunities for further description and comparison.
{"title":"Jumping Performance and Behavior of the Globular Springtail <i>Dicyrtomina minuta</i>.","authors":"A A Smith, J S Harrison","doi":"10.1093/iob/obae029","DOIUrl":"https://doi.org/10.1093/iob/obae029","url":null,"abstract":"<p><p>Springtails are among the most abundant arthropods on earth and they exhibit unique latch-mediated spring-actuated jumping behaviors and anatomical systems. Despite this, springtail jumps have not been well described, especially for those with a globular body plan. Here, we provide a complete description and visualization of jumping in the globular springtail <i>Dicyrtomina minuta</i>. A furca-powered jump results in an average take-off velocity of 1 ms<sup>-1</sup> in 1.7 ms, with a fastest acceleration to liftoff of 1938 ms<sup>-2</sup>. All jumps involve rapid backwards body rotation throughout, rotating on average at 282.2 Hz with a peak rate of 368.7 Hz. Despite body lengths of 1-2 mm, jumping resulted in a backwards trajectory traveling up to 102 mm in horizontal distance and 62 mm in vertical. Escape jumps in response to posterior stimulation did not elicit forward-facing jumps, suggesting that <i>D. minuta</i> is incapable of directing a jump off a flat surface within the 90° heading directly in front of them. Finally, two landing strategies were observed: collophore-anchoring, which allows for an immediate arrest and recovery, and uncontrolled landings where the springtail chaotically tumbles. In comparison to other fast jumping arthropods, linear performance measures globular springtail jumps place them between other systems like fleas and froghoppers. However, in angular body rotation, globular springtails like <i>D. minuta</i> surpass all other animal systems. Given the extraordinary performance measures, unique behavioral responses, and understudied nature of these species, globular springtails present promising opportunities for further description and comparison.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11360184/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142116923","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-21eCollection Date: 2024-01-01DOI: 10.1093/iob/obae031
A Smith, J Erber, A Watson, C Johnson, W E Gato, S B George
Salt marsh ecosystems are heavily reliant on ribbed mussel (Geukensia demissa) populations to aid in rapid recovery from droughts. The focus of this study was thus to document the effects of rising temperatures on ribbed mussel populations in a Georgia salt marsh. Seven lab and eight field experiments were used to assess the effects of current air temperatures on mussels at two high marsh (HM) sites with short and sparse cordgrass and one mid marsh (MM) site with tall and dense cordgrass. Field results in 2018 and 2019 indicate that ribbed mussels were experiencing extremely high temperatures for prolonged periods of time at the landlocked high marsh (LHM) site. In 2018, the highest temperature (54°C) and longest high temperature events, HTEs (58 days), that is, consecutive days with temperatures ≥40°C, were recorded at this site. When laboratory temperatures were increased from 20 to 36°C, mean heart rates increased by an average of 19 bpm for mussels from both high and MM sites respectively. When field temperatures rose from 20°C in April to 40°C in September 2019, mean heart rates increased by an average of 10 bpm for HM mussels and by 26.3 bpm for MM mussels. Under identical laboratory and field conditions, mean heart rates for mussels from the LHM site with the highest temperatures, increased by <1 bpm and 3.7 bpm respectively. Evidence of the potential role of shade on mussel aggregates was provided by examining whether mussels from the edge of mussel aggregates with little to no cordgrass for shade were more stressed than those living at the center of mussel aggregates. In the absence of shade, mean body temperatures for mussels at the edge of mussel aggregates were up to 8°C higher than for those living in the center underneath a dense tuft of cordgrass. Despite high body temperatures, mean heart rates and Hsp70 gene expression were lower for mussels living at the edges. This agrees with the strategy that during prolong exposure to high temperatures, mussels may reduce their heart rate to conserve energy and enhance survival. Alternatively, heat-stressed mussels at the edges of aggregates may not have the resources to express high levels of Hsp70. Increase in the frequency, intensity, and duration of HTEs may stress the physiological and biochemical function of mussel populations to the limit, dictate mussel aggregate size, and threaten the functionality of SE salt marshes.
{"title":"The Physiological and Biochemical Response of Ribbed Mussels to Rising Temperatures: Benefits of Salt Marsh Cordgrass.","authors":"A Smith, J Erber, A Watson, C Johnson, W E Gato, S B George","doi":"10.1093/iob/obae031","DOIUrl":"https://doi.org/10.1093/iob/obae031","url":null,"abstract":"<p><p>Salt marsh ecosystems are heavily reliant on ribbed mussel (<i>Geukensia demissa</i>) populations to aid in rapid recovery from droughts. The focus of this study was thus to document the effects of rising temperatures on ribbed mussel populations in a Georgia salt marsh. Seven lab and eight field experiments were used to assess the effects of current air temperatures on mussels at two high marsh (HM) sites with short and sparse cordgrass and one mid marsh (MM) site with tall and dense cordgrass. Field results in 2018 and 2019 indicate that ribbed mussels were experiencing extremely high temperatures for prolonged periods of time at the landlocked high marsh (LHM) site. In 2018, the highest temperature (54°C) and longest high temperature events, HTEs (58 days), that is, consecutive days with temperatures ≥40°C, were recorded at this site. When laboratory temperatures were increased from 20 to 36°C, mean heart rates increased by an average of 19 bpm for mussels from both high and MM sites respectively. When field temperatures rose from 20°C in April to 40°C in September 2019, mean heart rates increased by an average of 10 bpm for HM mussels and by 26.3 bpm for MM mussels. Under identical laboratory and field conditions, mean heart rates for mussels from the LHM site with the highest temperatures, increased by <1 bpm and 3.7 bpm respectively. Evidence of the potential role of shade on mussel aggregates was provided by examining whether mussels from the edge of mussel aggregates with little to no cordgrass for shade were more stressed than those living at the center of mussel aggregates. In the absence of shade, mean body temperatures for mussels at the edge of mussel aggregates were up to 8°C higher than for those living in the center underneath a dense tuft of cordgrass. Despite high body temperatures, mean heart rates and Hsp70 gene expression were lower for mussels living at the edges. This agrees with the strategy that during prolong exposure to high temperatures, mussels may reduce their heart rate to conserve energy and enhance survival. Alternatively, heat-stressed mussels at the edges of aggregates may not have the resources to express high levels of Hsp70. Increase in the frequency, intensity, and duration of HTEs may stress the physiological and biochemical function of mussel populations to the limit, dictate mussel aggregate size, and threaten the functionality of SE salt marshes.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11398905/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142286288","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-21eCollection Date: 2024-01-01DOI: 10.1093/iob/obae032
E Aaron, J H Long
For an integrated understanding of how evolutionary dynamics operate in parallel on multiple levels, computational models can enable investigations that would be otherwise infeasible or impossible. We present one modeling framework, Embodied Computational Evolution (ECE), and employ it to investigate how two types of randomness-genetic and developmental-drive the evolution of morphological complexity. With these two types of randomness implemented as germline mutation and transcription error, with rates varied in an [Formula: see text] factorial experimental design, we tested two related hypotheses: ( H1 ) Randomness in the gene transcription process alters the direct impact of selection on populations; and ( H2 ) Selection on locomotor performance targets morphological complexity. The experiment consisted of 121 conditions; in each condition, nine starting phenotypic populations developed from different randomly generated genomic populations of 60 individuals. Each of the resulting 1089 phenotypic populations evolved over 100 generations, with the autonomous, self-propelled individuals under directional selection for enhanced locomotor performance. As encoded by their genome, individuals had heritable morphological traits, including the numbers of segments, sensors, neurons, and connections between sensors and motorized joints that they activated. An individual's morphological complexity was measured by three different metrics derived from counts of the body parts. In support of H1 , variations in the rate of randomness in the gene transcription process varied the dynamics of selection. In support of H2 , the morphological complexity of populations evolved adaptively.
{"title":"Embodied Computational Evolution: A Model for Investigating Randomness and the Evolution of Morphological Complexity.","authors":"E Aaron, J H Long","doi":"10.1093/iob/obae032","DOIUrl":"10.1093/iob/obae032","url":null,"abstract":"<p><p>For an integrated understanding of how evolutionary dynamics operate in parallel on multiple levels, computational models can enable investigations that would be otherwise infeasible or impossible. We present one modeling framework, <i>Embodied Computational Evolution</i> (<i>ECE</i>), and employ it to investigate how two types of randomness-genetic and developmental-drive the evolution of morphological complexity. With these two types of randomness implemented as germline mutation and transcription error, with rates varied in an [Formula: see text] factorial experimental design, we tested two related hypotheses: ( <i><b>H<sub>1</sub></b> </i> ) Randomness in the gene transcription process alters the direct impact of selection on populations; and ( <i><b>H<sub>2</sub></b> </i> ) Selection on locomotor performance targets morphological complexity. The experiment consisted of 121 conditions; in each condition, nine starting phenotypic populations developed from different randomly generated genomic populations of 60 individuals. Each of the resulting 1089 phenotypic populations evolved over 100 generations, with the autonomous, self-propelled individuals under directional selection for enhanced locomotor performance. As encoded by their genome, individuals had heritable morphological traits, including the numbers of segments, sensors, neurons, and connections between sensors and motorized joints that they activated. An individual's morphological complexity was measured by three different metrics derived from counts of the body parts. In support of <i><b>H<sub>1</sub></b> </i> , variations in the rate of randomness in the gene transcription process varied the dynamics of selection. In support of <i><b>H<sub>2</sub></b> </i> , the morphological complexity of populations evolved adaptively.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11413536/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142286286","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-14eCollection Date: 2024-01-01DOI: 10.1093/iob/obae030
N Holtz, R C Albertson
Astyanax mexicanus is a freshwater fish species with blind cave morphs and sighted surface morphs. Like other troglodytic species, independently evolved cave-dwelling A. mexicanus populations share several stereotypic phenotypes, including the expansion of certain sensory systems, as well as the loss of eyes and pigmentation. Here, we assess the extent to which there is also parallelism in craniofacial development across cave populations. Since multiple forces may be acting upon variation in the A. mexicanus system, including phylogenetic history, selection, and developmental constraint, several outcomes are possible. For example, eye regression may have triggered a conserved series of compensatory developmental events, in which case we would expect to observe highly similar craniofacial phenotypes across cave populations. Selection for cave-specific foraging may also lead to the evolution of a conserved craniofacial phenotype, especially in regions of the head directly associated with feeding. Alternatively, in the absence of a common axis of selection or strong developmental constraints, craniofacial shape may evolve under neutral processes such as gene flow, drift, and bottlenecking, in which case patterns of variation should reflect the evolutionary history of A. mexicanus. Our results found that cave-adapted populations do share certain anatomical features; however, they generally did not support the hypothesis of a conserved craniofacial phenotype across caves, as nearly every pairwise comparison was statistically significant, with greater effect sizes noted between more distantly related cave populations with little gene flow. A similar pattern was observed for developmental trajectories. We also found that morphological disparity was lower among all three cave populations versus surface fish, suggesting eye loss is not associated with increased variation, which would be consistent with a release of developmental constraint. Instead, this pattern reflects the relatively low genetic diversity within cave populations. Finally, magnitudes of craniofacial integration were found to be similar among all groups, meaning that coordinated development among anatomical units is robust to eye loss in A. mexicanus. We conclude that, in contrast to many conserved phenotypes across cave populations, global craniofacial shape is more variable, and patterns of shape variation are more in line with population structure than developmental architecture or selection.
{"title":"Variable Craniofacial Shape and Development among Multiple Cave-Adapted Populations of <i>Astyanax mexicanus</i>.","authors":"N Holtz, R C Albertson","doi":"10.1093/iob/obae030","DOIUrl":"10.1093/iob/obae030","url":null,"abstract":"<p><p><i>Astyanax mexicanus</i> is a freshwater fish species with blind cave morphs and sighted surface morphs. Like other troglodytic species, independently evolved cave-dwelling <i>A. mexicanus</i> populations share several stereotypic phenotypes, including the expansion of certain sensory systems, as well as the loss of eyes and pigmentation. Here, we assess the extent to which there is also parallelism in craniofacial development across cave populations. Since multiple forces may be acting upon variation in the <i>A. mexicanus</i> system, including phylogenetic history, selection, and developmental constraint, several outcomes are possible. For example, eye regression may have triggered a conserved series of compensatory developmental events, in which case we would expect to observe highly similar craniofacial phenotypes across cave populations. Selection for cave-specific foraging may also lead to the evolution of a conserved craniofacial phenotype, especially in regions of the head directly associated with feeding. Alternatively, in the absence of a common axis of selection or strong developmental constraints, craniofacial shape may evolve under neutral processes such as gene flow, drift, and bottlenecking, in which case patterns of variation should reflect the evolutionary history of <i>A. mexicanus</i>. Our results found that cave-adapted populations do share certain anatomical features; however, they generally did not support the hypothesis of a conserved craniofacial phenotype across caves, as nearly every pairwise comparison was statistically significant, with greater effect sizes noted between more distantly related cave populations with little gene flow. A similar pattern was observed for developmental trajectories. We also found that morphological disparity was lower among all three cave populations versus surface fish, suggesting eye loss is not associated with increased variation, which would be consistent with a release of developmental constraint. Instead, this pattern reflects the relatively low genetic diversity within cave populations. Finally, magnitudes of craniofacial integration were found to be similar among all groups, meaning that coordinated development among anatomical units is robust to eye loss in <i>A. mexicanus</i>. We conclude that, in contrast to many conserved phenotypes across cave populations, global craniofacial shape is more variable, and patterns of shape variation are more in line with population structure than developmental architecture or selection.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-08-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11372417/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142132634","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-29eCollection Date: 2024-01-01DOI: 10.1093/iob/obae028
S Sil, F Visconti, G Chaverri, S E Santana
Piper is a mega-diverse genus of pioneer plants that contributes to the maintenance and regeneration of tropical forests. In the Neotropics, Carollia bats use olfaction to forage for Piper fruit and are a main disperser of Piper seeds via consumption and subsequent defecation during flight. In return, Piper fruits provide essential nutrients for Carollia year-round. There is evidence that the types and diversity of Piper frugivores are influenced by the primary habitat type of different Piper species (forest and gap), with forest Piper depending more on bats for seed dispersal; however, this pattern has not been tested broadly. We aimed to characterize and compare the interactions between Carollia and Piper across forested and gap habitats, and further investigate whether differences in fruit traits relevant to bat foraging (i.e., scent) could underlie differences in Carollia-Piper interactions. We collected nightly acoustic ultrasonic recordings and 24 h camera trap data in La Selva, Costa Rica across 12 species of Piper (six forest, six gap) and integrated this information with data on Carollia diet and Piper fruit scent. Merging biomonitoring modalities allowed us to characterize ecological interactions in a hierarchical manner: from general activity and presence of bats, to visitations and inspections of plants, to acquisition and consumption of fruits. We found significant differences in Carollia-Piper interactions between forested and gap habitats; however, the type of biomonitoring modality (camera trap, acoustics, diet) influenced our ability to detect these differences. Forest Piper were exclusively visited by bats, whereas gap Piper had a more diverse suite of frugivores; the annual diet of Carollia, however, is dominated by gap Piper since these plants produce fruit year-round. We found evidence that fruit scent composition significantly differs between forest and gap Piper, which highlights the possibility that bats could be using chemical cues to differentially forage for gap vs. forest Piper. By integrating studies of Piper fruit scent, plant visitation patterns, and Carollia diet composition, we paint a clearer picture of the ecological interactions between Piper and Carollia, and plant-animal mutualisms more generally.
{"title":"Effects of Habitat and Fruit Scent on the Interactions between Short-tailed Fruit Bats and <i>Piper</i> Plants.","authors":"S Sil, F Visconti, G Chaverri, S E Santana","doi":"10.1093/iob/obae028","DOIUrl":"10.1093/iob/obae028","url":null,"abstract":"<p><p><i>Piper</i> is a mega-diverse genus of pioneer plants that contributes to the maintenance and regeneration of tropical forests. In the Neotropics, <i>Carollia</i> bats use olfaction to forage for <i>Piper</i> fruit and are a main disperser of <i>Piper</i> seeds via consumption and subsequent defecation during flight. In return, <i>Piper</i> fruits provide essential nutrients for <i>Carollia</i> year-round. There is evidence that the types and diversity of <i>Piper</i> frugivores are influenced by the primary habitat type of different <i>Piper</i> species (forest and gap), with forest <i>Piper</i> depending more on bats for seed dispersal; however, this pattern has not been tested broadly. We aimed to characterize and compare the interactions between <i>Carollia</i> and <i>Piper</i> across forested and gap habitats, and further investigate whether differences in fruit traits relevant to bat foraging (i.e., scent) could underlie differences in <i>Carollia-Piper</i> interactions. We collected nightly acoustic ultrasonic recordings and 24 h camera trap data in La Selva, Costa Rica across 12 species of <i>Piper</i> (six forest, six gap) and integrated this information with data on <i>Carollia</i> diet and <i>Piper</i> fruit scent. Merging biomonitoring modalities allowed us to characterize ecological interactions in a hierarchical manner: from general activity and presence of bats, to visitations and inspections of plants, to acquisition and consumption of fruits. We found significant differences in <i>Carollia-Piper</i> interactions between forested and gap habitats; however, the type of biomonitoring modality (camera trap, acoustics, diet) influenced our ability to detect these differences. Forest <i>Piper</i> were exclusively visited by bats, whereas gap <i>Piper</i> had a more diverse suite of frugivores; the annual diet of <i>Carollia</i>, however, is dominated by gap <i>Piper</i> since these plants produce fruit year-round. We found evidence that fruit scent composition significantly differs between forest and gap <i>Piper</i>, which highlights the possibility that bats could be using chemical cues to differentially forage for gap vs. forest <i>Piper</i>. By integrating studies of <i>Piper</i> fruit scent, plant visitation patterns, and <i>Carollia</i> diet composition, we paint a clearer picture of the ecological interactions between <i>Piper</i> and <i>Carollia</i>, and plant-animal mutualisms more generally.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11316396/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141916613","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}